| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4923643 | 15 (0.250) | 5 (0.090) | 5/242 | NT | 23.8% | coding (553/897 nt) | PP_4333 | CheW domain‑containing protein |
| ? | NC_002947 | = 4923663 | 18 (0.330) | coding (533/897 nt) | PP_4333 | CheW domain‑containing protein | |||||
CCCATTCATAGCCCTGCACCGAAATCACGTATTGCAGGCCCTGGCGAAAATCATCGCGGTAGCGGTCGGGCATTACCCAACGCGCAGTGTCCAGCACCTTCAGGTTGCCGGCCTGGCAGGTCAGGATGCCGAGGAACCAGTCGGGCTGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4923493‑4923643‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggctggccAGGAGCTGACGCCACTGTTCGGCCAGCCCGACTGGTTCCTCGGCATCCTGACCTGCCAGGCCGGCAACCTGAAGGTGCTGGACACTGCGCGTTGGGTAATGCCCGACCGCTACCGCGATGATTTTCGCCAGGGCCTGCAATAC < NC_002947/4923663‑4923521 CCCATTCATAGCCCTGCACCGAAATCACGTATTGCAGGCCCTGGCGAAAATCATCGCGGTAGCGGTCGGGCATTACCCAACGCGCAGTGTCCAGCACCTTCAGGTTGCCGGCCTGGCAGGTCAGGATGCCGAGGAACCAGTCGGGCTGG > 2:42911/1‑149 GTATTGCAGGCCCTGGCGAAAATCATCGCGGTAGCGGTCGGGCATTACCCAACGCGCAGTGTCCAGCACCTTCAGGTTGCCGGCCTGGCAGGTCAGGATGCCGAGGAACCAGTCGGGCTGGCCAGGAGCTGACGCCACTGTTCGGCCAG < 1:85604/149‑1 GGGCATTACCCAACGCGCAGTGTCCAGCACCTTCAGGTTGCCGGCCTGGCAGGTCAGGATGCCGAGGAACCAGTCGGGCTGGCCAGGAGCTGACGCCACTGTTCGGCCAGC > 1:356163/1‑111 GGGCATTACCCAACGCGCAGTGTCCAGCACCTTCAGGTTGCCGGCCTGGCAGGTCAGGATGCCGAGGAACCAGTCGGGCTGGCCAGGAGCTGACGCCACTGTTCGGCCAGC < 2:356163/111‑1 CAGCACCTTCAGGTTGCCGGCCTGGCAGGTCAGGATGCCGAGGAACCAGTCGGGCTGGCCAGGAGCTGACGCCACTGTTCGGCCAGCC > 1:212702/1‑88 CAGCACCTTCAGGTTGCCGGCCTGGCAGGTCAGGATGCCGAGGAACCAGTCGGGCTGGCCAGGAGCTGACGCCACTGTTCGGCCAGCC < 2:212702/88‑1 CTGGCCAGGAGCTGACGCCACTGTTCGGCCAGCCCGACTGGTTCCTCGGCATCCTGACCTGCCAGGCCGGCAACCTGAAGGTGCTGGACACTGCGCGTTGGGTAATGCCCGACCGCTACCGCGATGATTTTCGCCAGGGCCTGCAATAC > 1:42911/1‑149 CTGGCCAGGAGCTGACGCCACTGTTCGGCCAGCCCGACTGGTTCCTCGGCATCCTGACCTGCCAGGCCGGCAACCTGAAGGTGCTGGACACTGCGCGTTGGGTAATGCCCGACCGCTACCGCGATGATTTTCGCCAGGGCCTGCAATAC < 4:320261/149‑1 caGCCAGGAGCTGACGCCACTGTTCGGCCAGCCCGACTGGTTCCTCGGCATCCTGACCTGCCAGGCCGGCAACCTGAAGGTGCTGGACACTGCGCGTTGGGTAATGCCCGACCGCTACCGCGATGATTTTCGCCAGGG > 7:58275/3‑138 caGCCAGGAGCTGACGCCACTGTTCGGCCAGCCCGACTGGTTCCTCGGCATCCTGACCTGCCAGGCCGGCAACCTGAAGGTGCTGGACACTGCGCGTTGGGTAATGCCCGACCGCTACCGCGATGATTTTCGCCAGGG < 8:58275/136‑1 TGGCCAGGAGCTGACGCCACTGTTCGGCCAGCCCGACTGGTTCCTCGGCATCCTGACCTGCCAGGCCGGCAACCTGAAGGTGCTGGACACTGCGCGTTGGGTAATGCCCGACCGCTACCGCGATGATTTTCGCC > 5:86598/1‑134 TGGCCAGGAGCTGACGCCACTGTTCGGCCAGCCCGACTGGTTCCTCGGCATCCTGACCTGCCAGGCCGGCAACCTGAAGGTGCTGGACACTGCGCGTTGGGTAATGCCCGACCGCTACCGCGATGATTTTCGCC < 6:86598/134‑1 CCCATTCATAGCCCTGCACCGAAATCACGTATTGCAGGCCCTGGCGAAAATCATCGCGGTAGCGGTCGGGCATTACCCAACGCGCAGTGTCCAGCACCTTCAGGTTGCCGGCCTGGCAGGTCAGGATGCCGAGGAACCAGTCGGGCTGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4923493‑4923643‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggctggccAGGAGCTGACGCCACTGTTCGGCCAGCCCGACTGGTTCCTCGGCATCCTGACCTGCCAGGCCGGCAACCTGAAGGTGCTGGACACTGCGCGTTGGGTAATGCCCGACCGCTACCGCGATGATTTTCGCCAGGGCCTGCAATAC < NC_002947/4923663‑4923521 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |