| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4923643 | 15 (0.250) | 5 (0.090) | 5/242 | NT | 23.8% | coding (553/897 nt) | PP_4333 | CheW domain‑containing protein |
| ? | NC_002947 | = 4923663 | 18 (0.330) | coding (533/897 nt) | PP_4333 | CheW domain‑containing protein | |||||
GTATTGCAGGCCCTGGCGAAAATCATCGCGGTAGCGGTCGGGCATTACCCAACGCGCAGTGTCCAGCACCTTCAGGTTGCCGGCCTGGCAGGTCAGGATGCCGAGGAACCAGTCGGGCTGGCCGAACAGTGGCGTCAGCTCCTGGCCAGCCAGGGTGTAGATCGAGCCCAGGCACACCAACGGCACCGCCAGGGTCAGGCCGGCAACGTCGAACAGCAGGCATTCGAACGGCTCGGCCGCCCACACCGGACGACCATCGACAGTGGCCGGGGGTACGGGCAGGTTGGGTGC > NC_002947/4923521‑4923811 | gTATTGCAGGCCCTGGCGAAAATCATCGCGGTAGCGGTCGGGCATTACCCAACGCGCAGTGTCCAGCACCTTCAGGTTGCCGGCCTGGCAGGTCAGGATGCCGAGGAACCAGTCGGGCTGGCCGAACAGTGGCGTCAGCTCCTggccag > 1:42911‑M2/1‑143 (MQ=255)gTATTGCAGGCCCTGGCGAAAATCATCGCGGTAGCGGTCGGGCATTACCCAACGCGCAGTGTCCAGCACCTTCAGGTTGCCGGCCTGGCAGGTCAGGATGCCGAGGAACCAGTCGGGCTGGCCGAACAGTGGCGTCAGCTCCTggccag < 4:320261‑M2/149‑7 (MQ=255) cccTGGCGAAAATCATCGCGGTAGCGGTCGGGCATTACCCAACGCGCAGTGTCCAGCACCTTCAGGTTGCCGGCCTGGCAGGTCAGGATGCCGAGGAACCAGTCGGGCTGGCCGAACAGTGGCGTCAGCTCCTggctg < 8:58275‑M2/138‑6 (MQ=255) cccTGGCGAAAATCATCGCGGTAGCGGTCGGGCATTACCCAACGCGCAGTGTCCAGCACCTTCAGGTTGCCGGCCTGGCAGGTCAGGATGCCGAGGAACCAGTCGGGCTGGCCGAACAGTGGCGTCAGCTCCTggctg > 7:58275‑M2/1‑133 (MQ=255) tGGCGAAAATCATCGCGGTAGCGGTCGGGCATTACCCAACGCGCAGTGTCCAGCACCTTCAGGTTGCCGGCCTGGCAGGTCAGGATGCCGAGGAACCAGTCGGGCTGGCCGAACAGTGGCGTCAGCTCCTGGCCAGCCAGGgtg > 1:12311/1‑144 (MQ=255) ggCGAAAATCATCGCGGTAGCGGTCGGGCATTACCCAACGCGCAGTGTCCAGCACCTTCAGGTTGCCGGCCTGGCAGGTCAGGATGCCGAGGAACCAGTCGGGCTGGCCGAACAGTGGCGTCAGCTCCTggcca < 6:86598‑M2/134‑6 (MQ=255) ggCGAAAATCATCGCGGTAGCGGTCGGGCATTACCCAACGCGCAGTGTCCAGCACCTTCAGGTTGCCGGCCTGGCAGGTCAGGATGCCGAGGAACCAGTCGGGCTGGCCGAACAGTGGCGTCAGCTCCTggcca > 5:86598‑M2/1‑129 (MQ=255) gAAAATCATCGCGGTAGCGGTCGGGCATTACCCAACGCGCAGTGTCCAGCACCTTCAGGTTGCCGGCCTGGCAGGTCAGGATGCCGAGCAACCAGTCGGGCTGGCCGAACACTGGCGTCAGCTACTGGCCAGCCAGGGTGTAGATCTAg > 6:365594/1‑149 (MQ=255) tcatcGCGGTAGCGGTCGGGCATTACCCAACGCGCAGTGTCCAGCACCTTCAGGTTGCCGGCCTGGCAGGTCAGGATGCCGAGGAACCAGTCGGGCTGGCCGAACAGTGGCGTCAGCTCCTGGCCAGCCAGGGTGTAGATCGAGCCCAg < 7:294195/149‑1 (MQ=255) tcGCGGTAGCGGTCGGGCATTACCCAACGCGCAGTGTCCAGCACCTTCAGGTTGCCGGCCTGGCAGGTCAGGATGCCGAGGAACCAGTCGGGCTGGCCGAACAGTGGCGTCAGCTCCTGGCCAGCCAGGGTGTAGATCGAGCCCAGGca > 3:343141/1‑149 (MQ=255) gCGGTCGGGCATTACCCTACGCGCTGTGTCCAGCACCTTCAGTTTGTGTGCCTGGCAGGTCAGGATGCTGATTAACGAGTCGGGCTGGCCTAACAGTGGCGTCAGCTCCTGGCCAGCCAGGGTGTAGATCGAGCCCAGGCACACCAAc < 4:343141/148‑1 (MQ=255) gCATTACCCAACGCGCAGTGTCCAGCACCTTCATGTTGACTTCATGGCAGGTCATGATGCCTATGAAACAGTCGGGCTGGCCGAACAGTGGCGTCAGCTCCTGGCCAGCCAGGGTGTAGATCGAGCCCAGGCACACCAACGGCACCg < 4:188065/147‑1 (MQ=255) cAACGCGCAGTGTCCAGCACCTTCAGGTTGCCGGCCTGGCAGGTCAGGATGCCGAGGAACCAGTCGGGCTGGCCGAACAGTGGCGTCAGCTCCTGGCCAGCCAGGGTGTa < 8:107694/110‑1 (MQ=255) cAACGCGCAGTGTCCAGCACCTTCAGGTTGCCGGCCTGGCAGGTCAGGATGCCGAGGAACCAGTCGGGCTGGCCGAACAGTGGCGTCAGCTCCTGGCCAGCCAGGGTGTa > 7:107694/1‑110 (MQ=255) gcgcAGTGTCCAGCACCTTCAGGTTGCCGGCCTGGCAGGTCAGGATGCCGAGGAACCAGTCGGGCTGGCCGAACAGTGGCGTCAGCTCCTGGCCAGCCAGGGTGTAGATCGAGCCCAGGCACACCAACGGCACCGCCCGGGTCAGGCCg > 7:346229/1‑149 (MQ=255) aTGCCGAGGAACCAGTCGGGCTGGCCGAACAGTGGCGTCAGCTCCTGGCCAGCCAGGGTGTAGATCGAGCCCAGGCACACCAACGGCACCGCCAGGGTCAGGCCGGCAACGTCGAACAGCAGGCATTCGAACGGCTCGGCCGCCCacac < 2:367546/149‑1 (MQ=255) aGGAACCAGTCGGGCTGGCCGAACAGTGGCGTCAGCTCCTGGCCAGCCAGGGTGTAGATCGAGCCCAGGCACACCAACGGCACCGCCAGGGTCAGGCCGGCAACGTCGAACAGCAGGCATTCGAACGGCTCGGCCGCCCACACCGgacg > 7:209790/1‑149 (MQ=255) ggCTGGCCGAACAGTGGCGTCAGCTCCTggccagcccgactggttcctcggcatcctgacctgccaggccggcaacctgaaggtgctg > 1:212702‑M2/1‑28 (MQ=255) ggCTGGCCGAACAGTGGCGTCAGCTCCTggccagcccgactggttcctcggcatcctgacctgccaggccggcaacctgaaggtgctg < 2:212702‑M2/88‑61 (MQ=255) gCTGGCCGAACAGTGGCGTCAGCTCCTggccagcccgactggttcctcggcatcctgacctgccaggccggcaacctgaaggtgctggacactgcgcgttgggtaatgccc < 2:356163‑M2/111‑85 (MQ=255) gCTGGCCGAACAGTGGCGTCAGCTCCTggccagcccgactggttcctcggcatcctgacctgccaggccggcaacctgaaggtgctggacactgcgcgttgggtaatgccc > 1:356163‑M2/1‑27 (MQ=255) cTGGCCGAACAGTGGCGTCAGCTCCTggccagcccgactggttcctcggcatcctgacctgccaggccggcaacctgaaggtgctggacactgcgcgttgggtaatgcccgaccgctaccgcgatgattttcgccagggcctgcaatac < 1:85604‑M2/149‑124 (MQ=255) cGAACAGTGGCGTCAGCTCCTGGCCAGCCAGGGTGTAGATCTCGCAAATCCCCAAAACATTAAAAAAAAAAATAAGGCAGGCAACGTCGAACAGCAGGCATTCGAACGGCTCGGCCGCCCACACAGGACGCCCATCGACAGTGTCCggg > 4:90959/1‑149 (MQ=255) aCAGTGGCGTCAGCTCCTGGCCAGCCAGGGTGTAGATCGAGCCCAGGCACACCAACGGCACCGCCAGGGTCAGGCCGGCAACGTCGAACAGCAGGCATTCGAACGGCTCGGCCGCCCACACCGGACGACCATCGACAGTGGCCGGGGGt < 2:12311/149‑1 (MQ=255) tGGCGTCAGCTCCTGGCCAGCCAGGGTGTAGATCGAGCCCAGGCACACCAACGGCACCGCCAGGGTCAGGCCGGCAACGTCgca > 5:342448/1‑82 (MQ=255) tGGCGTCAGCTCCTGGCCAGCCAGGGTGTAGATCGAGCCCAGGCACACCAACGGCACAGCCAGGGTCAGGCCGGCAACGTCGaa < 6:342448/84‑1 (MQ=255) gCGTCAGCTCCTGGCCAGCCAGGGTGTAGATCGAGCCCAGGCACACCAACGGCACCGCCAGGGTCAGGCCGGCAACGGCGAACAGCAGGCATTCGAACGGCTCGGCCGCCCACACCGGACGACCATCGACAGTGGCCGGGGGTACGGGc < 3:90959/149‑1 (MQ=255) cGTCAGCTCCTGGCCAGCCAGGGTGTAGATCGAGCCCAGGCACACCAACGGCACCGCCAGGGTCAGGCCGGCAACGTCGAACAGCAGGCATTCGAACGGCTCGGCCGCCCACACCGgacga < 2:354908/121‑1 (MQ=255) cGTCAGCTCCTGGCCAGCCAGGGTGTAGATCGAGCCCAGGCACACCAACGGCACCGCCAGGGTCAGGCCGGCAACGTCGAACAGCAGGCATTCGAACGGCTCGGCCGCCCACACCGgacga > 1:354908/1‑121 (MQ=255) tctacacccTGGCTGGCCAGGGTGTAGATCGAGCCCAGGCACACCAACGGCACCGCCAGGGTCAGGCCGGCAACGTCGAACAGCAGGCATTCGAACGGCTCGGCCGCCCACACCGGACGACCATCGACAGTGGCCGGGGGTACGGGCAg > 7:248550/8‑149 (MQ=255) acacccTGGCTGGCCAGGGTGTAGATCGAGCCCAGGCTCACCAACGGCACCGCCAGGGTCAGGCCGGCAACGTCGAACAGCAGGCATTCGAACGGCTCGGCCGCCCACACCGGACGACCATCGACAGTGGCCGGGGGTACGGGCAGGtt > 6:236295/5‑149 (MQ=255) tCCTGGCCAGCCAGGGTGTAGATCGAGCCCAGGCACACCAACGGCACCGCCAGGGTCAGGCCGGCAACGTCGAACAGCAGGCATTCGAAc < 4:15478/90‑1 (MQ=255) tCCTGGCCAGCCAGGGTGTAGATCGAGCCCAGGCACACCAACGGCACCGCCAGGGTCAGGCCGGCAACGTCGAACAGCAGGCATTCGAAc > 3:15478/1‑90 (MQ=255) tGGCCAGCCAGGGTGTAGATCGAGCCCAGGCACACCAACGGCACCGCCAGGGTCAGGCCGGCAACGTCGAACAGCAGGCATTCGAACGGCTCGGCCGCCCACACCGGACGACCATCGACAGTGGCCGGGGGTACGGGCAGGTTGGGTGc < 8:209790/149‑1 (MQ=255) | GTATTGCAGGCCCTGGCGAAAATCATCGCGGTAGCGGTCGGGCATTACCCAACGCGCAGTGTCCAGCACCTTCAGGTTGCCGGCCTGGCAGGTCAGGATGCCGAGGAACCAGTCGGGCTGGCCGAACAGTGGCGTCAGCTCCTGGCCAGCCAGGGTGTAGATCGAGCCCAGGCACACCAACGGCACCGCCAGGGTCAGGCCGGCAACGTCGAACAGCAGGCATTCGAACGGCTCGGCCGCCCACACCGGACGACCATCGACAGTGGCCGGGGGTACGGGCAGGTTGGGTGC > NC_002947/4923521‑4923811 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |