| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4923643 | 15 (0.250) | 5 (0.090) | 5/242 | NT | 23.8% | coding (553/897 nt) | PP_4333 | CheW domain‑containing protein |
| ? | NC_002947 | = 4923663 | 18 (0.330) | coding (533/897 nt) | PP_4333 | CheW domain‑containing protein | |||||
ATTCATAGCCCTGCACCGAAATCACGTATTGCAGGCCCTGGCGAAAATCATCGCGGTAGCGGTCGGGCATTACCCAACGCGCAGTGTCCAGCACCTTCAGGTTGCCGGCCTGGCAGGTCAGGATGCCGAGGAACCAGTCGGGCTGGCCGAACAGTGGCGTCAGCTCCTGGCCAGCCAGGGTGTAGATCGAGCCCAGGCACACCAACGGCACCGCCAGGGTCAGGCCGGCAACGTCGAACAGCAGGCATTCGAACGGCTCGGCCGCCCACACCGGACGACCATCGACAGTGGCCGGG > NC_002947/4923496‑4923791 | aTTCATAGCCCTGCACCGAAATCACGTATTGCAGGCCCTGGCGAAAATCATCGCGGTAGCGGTCGGGCATTACCCAACGCGCAGTGTCCAGCACCTTCAGGTTGCCGGCCTGGCAGGTCAGGATGCCGAGGAACCAGTCGGGCTGGCCg < 3:111573/149‑1 (MQ=255) aTAGCCCTGCACCGAAATCACGTATTGCAGGCCCTGGCGAAAATCATCGCGGTAGCGGTCGGGCATTACCCAACGCGCAGTGTCCAGCACCTTCAGGTTGCCGGCCTGGCAGGTCAGGATGCCGAGGAACCAGTCGGGCTGGCCGAACa > 8:294195/1‑149 (MQ=255) gCCCTGCACCGAAATCACGTATTGCAGGCCCTGGCGAAAATCATCGCGGTAGCGGTCGGGCATTACCCAACGCGCAGTGTCCAGCACCTTCAGGTTGCCGGCCTGGCAGGTCAGGATGCCGAGGAACCAGTCGGGCTGGCCGAACAGTg < 5:144857/149‑1 (MQ=255) cGAAATCACGTATTGCAGGCCCTGGCGAAAATCATCGCGGTAGCGGTCGGGCATTACCCAACGCACAGTGTCCAGCACCTTCAGGTTGCCGGCCTGGCAGGTCAGGATGCCGAGGAACCAGTCGGGCTGGCCGAACAGTGGCGTCAGCt > 1:367546/1‑149 (MQ=255) gTATTGCAGGCCCTGGCGAAAATCATCGCGGTAGCGGTCGGGCATTACCCAACGCGCAGTGTCCAGCACCTTCAGGTTGCCGGCCTGGCAGGTCAGGATGCCGAGGAACCAGTCGGGCTGGCCaggagctgacgccactgttcggccag < 1:85604‑M1/149‑27 (MQ=255) gTATTGCAGGCCCTGGCGAAAATCATCGCGGTAGCGGTCGGGCATTACCCAACGCGCAGTGTCCAGCACCTTCAGGTTGCCGGCCTGGCAGGTCAGGATGCCGAGGAACCAGTCGGGCTGGCCGAACAGTGGCGTCAGCTCCTggccag > 1:42911‑M2/1‑143 (MQ=255) gTATTGCAGGCCCTGGCGAAAATCATCGCGGTAGCGGTCGGGCATTACCCAACGCGCAGTGTCCAGCACCTTCAGGTTGCCGGCCTGGCAGGTCAGGATGCCGAGGAACCAGTCGGGCTGGCCGAACAGTGGCGTCAGCTCCTggccag < 4:320261‑M2/149‑7 (MQ=255) cccTGGCGAAAATCATCGCGGTAGCGGTCGGGCATTACCCAACGCGCAGTGTCCAGCACCTTCAGGTTGCCGGCCTGGCAGGTCAGGATGCCGAGGAACCAGTCGGGCTGGCCGAACAGTGGCGTCAGCTCCTggctg > 7:58275‑M2/1‑133 (MQ=255) cccTGGCGAAAATCATCGCGGTAGCGGTCGGGCATTACCCAACGCGCAGTGTCCAGCACCTTCAGGTTGCCGGCCTGGCAGGTCAGGATGCCGAGGAACCAGTCGGGCTGGCCGAACAGTGGCGTCAGCTCCTggctg < 8:58275‑M2/138‑6 (MQ=255) tGGCGAAAATCATCGCGGTAGCGGTCGGGCATTACCCAACGCGCAGTGTCCAGCACCTTCAGGTTGCCGGCCTGGCAGGTCAGGATGCCGAGGAACCAGTCGGGCTGGCCGAACAGTGGCGTCAGCTCCTGGCCAGCCAGGgtg > 1:12311/1‑144 (MQ=255) ggCGAAAATCATCGCGGTAGCGGTCGGGCATTACCCAACGCGCAGTGTCCAGCACCTTCAGGTTGCCGGCCTGGCAGGTCAGGATGCCGAGGAACCAGTCGGGCTGGCCGAACAGTGGCGTCAGCTCCTggcca < 6:86598‑M2/134‑6 (MQ=255) ggCGAAAATCATCGCGGTAGCGGTCGGGCATTACCCAACGCGCAGTGTCCAGCACCTTCAGGTTGCCGGCCTGGCAGGTCAGGATGCCGAGGAACCAGTCGGGCTGGCCGAACAGTGGCGTCAGCTCCTggcca > 5:86598‑M2/1‑129 (MQ=255) gAAAATCATCGCGGTAGCGGTCGGGCATTACCCAACGCGCAGTGTCCAGCACCTTCAGGTTGCCGGCCTGGCAGGTCAGGATGCCGAGCAACCAGTCGGGCTGGCCGAACACTGGCGTCAGCTACTGGCCAGCCAGGGTGTAGATCTAg > 6:365594/1‑149 (MQ=255) tcatcGCGGTAGCGGTCGGGCATTACCCAACGCGCAGTGTCCAGCACCTTCAGGTTGCCGGCCTGGCAGGTCAGGATGCCGAGGAACCAGTCGGGCTGGCCGAACAGTGGCGTCAGCTCCTGGCCAGCCAGGGTGTAGATCGAGCCCAg < 7:294195/149‑1 (MQ=255) tcGCGGTAGCGGTCGGGCATTACCCAACGCGCAGTGTCCAGCACCTTCAGGTTGCCGGCCTGGCAGGTCAGGATGCCGAGGAACCAGTCGGGCTGGCCGAACAGTGGCGTCAGCTCCTGGCCAGCCAGGGTGTAGATCGAGCCCAGGca > 3:343141/1‑149 (MQ=255) gCGGTCGGGCATTACCCTACGCGCTGTGTCCAGCACCTTCAGTTTGTGTGCCTGGCAGGTCAGGATGCTGATTAACGAGTCGGGCTGGCCTAACAGTGGCGTCAGCTCCTGGCCAGCCAGGGTGTAGATCGAGCCCAGGCACACCAAc < 4:343141/148‑1 (MQ=255) tCGGGCATTACCCAACGCGCAGTGTCCAGCACCTTCAGGTTGCCGGCCTGGCAGGTCAGGATGCCGATGAACCAGTCGGGCTGGCCGAACAGTg < 1:173976/94‑1 (MQ=255) tCGGGCATTACCCAACGCGCAGTGTCCAGCACCTTCAGGTTGCCGGCCTGGCAGGTCAGGATGCCGAGGAACCAGTCGGGCTGGCCGAACAGTg > 2:173976/1‑94 (MQ=255) gggCATTACCCAACGCGCAGTGTCCAGCACCTTCAGGTTGCCGGCCTGGCAGGTCAGGATGCCGAGGAACCAGTCGGGCTGGCCaggagctgacgccactgttcggccagc < 2:356163‑M1/111‑28 (MQ=255) gggCATTACCCAACGCGCAGTGTCCAGCACCTTCAGGTTGCCGGCCTGGCAGGTCAGGATGCCGAGGAACCAGTCGGGCTGGCCaggagctgacgccactgttcggccagc > 1:356163‑M1/1‑84 (MQ=255) gCATTACCCAACGCGCAGTGTCCAGCACCTTCATGTTGACTTCATGGCAGGTCATGATGCCTATGAAACAGTCGGGCTGGCCGAACAGTGGCGTCAGCTCCTGGCCAGCCAGGGTGTAGATCGAGCCCAGGCACACCAACGGCACCg < 4:188065/147‑1 (MQ=255) cAACGCGCAGTGTCCAGCACCTTCAGGTTGCCGGCCTGGCAGGTCAGGATGCCGAGGAACCAGTCGGGCTGGCCGAACAGTGGCGTCAGCTCCTGGCCAGCCAGGGTGTa < 8:107694/110‑1 (MQ=255) cAACGCGCAGTGTCCAGCACCTTCAGGTTGCCGGCCTGGCAGGTCAGGATGCCGAGGAACCAGTCGGGCTGGCCGAACAGTGGCGTCAGCTCCTGGCCAGCCAGGGTGTa > 7:107694/1‑110 (MQ=255) gcgcAGTGTCCAGCACCTTCAGGTTGCCGGCCTGGCAGGTCAGGATGCCGAGGAACCAGTCGGGCTGGCCGAACAGTGGCGTCAGCTCCTGGCCAGCCAGGGTGTAGATCGAGCCCAGGCACACCAACGGCACCGCCCGGGTCAGGCCg > 7:346229/1‑149 (MQ=255) cAGCACCTTCAGGTTGCCGGCCTGGCAGGTCAGGATGCCGAGGAACCAGTCGGGCTGGCCaggagctgacgccactgttcggccagcc > 1:212702‑M1/1‑60 (MQ=255) cAGCACCTTCAGGTTGCCGGCCTGGCAGGTCAGGATGCCGAGGAACCAGTCGGGCTGGCCaggagctgacgccactgttcggccagcc < 2:212702‑M1/88‑29 (MQ=255) aTGCCGAGGAACCAGTCGGGCTGGCCGAACAGTGGCGTCAGCTCCTGGCCAGCCAGGGTGTAGATCGAGCCCAGGCACACCAACGGCACCGCCAGGGTCAGGCCGGCAACGTCGAACAGCAGGCATTCGAACGGCTCGGCCGCCCacac < 2:367546/149‑1 (MQ=255) aGGAACCAGTCGGGCTGGCCGAACAGTGGCGTCAGCTCCTGGCCAGCCAGGGTGTAGATCGAGCCCAGGCACACCAACGGCACCGCCAGGGTCAGGCCGGCAACGTCGAACAGCAGGCATTCGAACGGCTCGGCCGCCCACACCGgacg > 7:209790/1‑149 (MQ=255) ggCTGGCCGAACAGTGGCGTCAGCTCCTggccagcccgactggttcctcggcatcctgacctgccaggccggcaacctgaaggtgctg < 2:212702‑M2/88‑61 (MQ=255) ggCTGGCCGAACAGTGGCGTCAGCTCCTggccagcccgactggttcctcggcatcctgacctgccaggccggcaacctgaaggtgctg > 1:212702‑M2/1‑28 (MQ=255) gCTGGCCGAACAGTGGCGTCAGCTCCTggccagcccgactggttcctcggcatcctgacctgccaggccggcaacctgaaggtgctggacactgcgcgttgggtaatgccc < 2:356163‑M2/111‑85 (MQ=255) gCTGGCCGAACAGTGGCGTCAGCTCCTggccagcccgactggttcctcggcatcctgacctgccaggccggcaacctgaaggtgctggacactgcgcgttgggtaatgccc > 1:356163‑M2/1‑27 (MQ=255) cTGGCCaggagctgacgccactgttcggccagcccgactggttcctcggcatcctgacctgccaggccggcaacctgaaggtgctggacactgcgcgttgggtaatgcccgaccgctaccgcgatgattttcgccagggcctgcaatac > 1:42911‑M1/1‑6 (MQ=255) cTGGCCaggagctgacgccactgttcggccagcccgactggttcctcggcatcctgacctgccaggccggcaacctgaaggtgctggacactgcgcgttgggtaatgcccgaccgctaccgcgatgattttcgccagggcctgcaatac < 4:320261‑M1/149‑144 (MQ=255) cTGGCCGAACAGTGGCGTCAGCTCCTggccagcccgactggttcctcggcatcctgacctgccaggccggcaacctgaaggtgctggacactgcgcgttgggtaatgcccgaccgctaccgcgatgattttcgccagggcctgcaatac < 1:85604‑M2/149‑124 (MQ=255) tGGCCaggagctgacgccactgttcggccagcccgactggttcctcggcatcctgacctgccaggccggcaacctgaaggtgctggacactgcgcgttgggtaatgcccgaccgctaccgcgatgattttcgcc < 6:86598‑M1/134‑130 (MQ=255) tGGCCaggagctgacgccactgttcggccagcccgactggttcctcggcatcctgacctgccaggccggcaacctgaaggtgctggacactgcgcgttgggtaatgcccgaccgctaccgcgatgattttcgcc > 5:86598‑M1/1‑5 (MQ=255) cagccaggagctgacgccactgttcggccagcccgactggttcctcggcatcctgacctgccaggccggcaacctgaaggtgctggacactgcgcgttgggtaatgcccgaccgctaccgcgatgattttcgccaggg > 7:58275‑M1/3‑5 (MQ=255) cagccaggagctgacgccactgttcggccagcccgactggttcctcggcatcctgacctgccaggccggcaacctgaaggtgctggacactgcgcgttgggtaatgcccgaccgctaccgcgatgattttcgccaggg < 8:58275‑M1/136‑134 (MQ=255) cGAACAGTGGCGTCAGCTCCTGGCCAGCCAGGGTGTAGATCTCGCAAATCCCCAAAACATTAAAAAAAAAAATAAGGCAGGCAACGTCGAACAGCAGGCATTCGAACGGCTCGGCCGCCCACACAGGACGCCCATCGACAGTGTCCggg > 4:90959/1‑149 (MQ=255) | ATTCATAGCCCTGCACCGAAATCACGTATTGCAGGCCCTGGCGAAAATCATCGCGGTAGCGGTCGGGCATTACCCAACGCGCAGTGTCCAGCACCTTCAGGTTGCCGGCCTGGCAGGTCAGGATGCCGAGGAACCAGTCGGGCTGGCCGAACAGTGGCGTCAGCTCCTGGCCAGCCAGGGTGTAGATCGAGCCCAGGCACACCAACGGCACCGCCAGGGTCAGGCCGGCAACGTCGAACAGCAGGCATTCGAACGGCTCGGCCGCCCACACCGGACGACCATCGACAGTGGCCGGG > NC_002947/4923496‑4923791 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |