| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4933522 = | 58 (0.990) | 4 (0.070) | 3/240 | NT | 7.3% | coding (927/1308 nt) | flhF | flagellar biosynthesis protein FlhF |
| ? | NC_002947 | 4933601 = | 48 (0.880) | coding (848/1308 nt) | flhF | flagellar biosynthesis protein FlhF | |||||
GCGCTCAGGAACAGCTCAAGACCCTGGGCCGCATCCTCAACGTGCCGGTGACTTACGTCGACCCGGGCCAGTCGCTGGCAGCAGCGCTGGAACCACTGCTGCGCAAGCGCGTGGTGCTGATCGATACTGCCGGCCTGCAAGCCAGCGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4933670‑4933522‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccagcgacTGGCCCGGGTCGACGTAAGTCACCGGCACGTTGAGGATGCGGCCCAGGGTCTTGAGCTGTTCCTGAGCGCCGATACGGAAG > NC_002947/4933601‑4933681 GCGCTCAGGAACAGCTCAAGACCCTGGGCCGCATCCTCAACGTGCCGGTGACTTACGTCGACCCGGGCCAGTCGCTGGCAGCAGCGCTGGAACCACTGCTGCGCAAGCGCGTGGTGCTGATCGATACTGCCGGCCTGCAAGCCAGCGAC > 1:121053/1‑149GCGCTCAGGAACAGCTCAAGACCCTGGGCCGCATCCTCAACGTGCCGGTGACTTACGTCGACCCGGGCCAGTCGCTGGCAGCAGCGCTGGAACCACTGCTGCGCAAGCGCGTGGTGCTGATCCATACTGCCGGCCTGCAAGCCAGCGAC > 1:166042/1‑149 CAACGTGCCGGTGACTTACGTCGACCCGGGCCAGTCGCTGGCAGCAGCGCTGGAACCACTGCTGCGCAAGCGCGTGGTGCTGATCGATACTGCCGGCCTGCAAG > 3:39207/1‑104 CAACGTGCCGGTGACTTACGTCGACCCGGGCCAGTCGCTGGCAGCAGCGCTGGAACCACTGCTGCGCAAGCGCGTGGTGCTGATCGATACTGCCGGCCTGCAAG < 4:39207/104‑1 GTCGCTGGCAGCAGCGCTGGAACCACTGCTGCGCAAGCGCGTGGTGCTGATCGATACTGCCGGCCTGCAAGCCAGCGACTGGCCCGGGTCGACGTAAGTCACCGGCACGTTGAGGATGCGGCCCAGGGTCTTGAGCTGTTCC > 3:292064/1‑142 GTCGCTGGCAGCAGCGCTGGAACCACTGCTGCGCAAGCGCGTGGTGCTGATCGATACTGCCGGCCTGCAAGCCAGCGACTGGCCCGGGTCGACGTAAGTCACCGGCACGTTGAGGATGCGGCCCAGGGTCTTGAGCTGTTCC < 4:292064/142‑1 GTCGCTGGCAGCAGCGCTGGAACCACTGCAGCGCAAGCGCGTGGTGCTGATCGATACTGCCGGCCTGCAAGCCAGCGACTGGCCCGGGTCGACGTAAGTCACCGGCACGTTGAGGATGCGGCCCAGGGTCTTGAGCTGTTCCTGAGCGC > 1:211022/1‑149 CAGCGCTGGAACCACTGCTGCGCAAGCGCGTGGTGCTGATCGATACTGCCGGCCTGCAAGCCAGCGACTGGCCCGGGTCGACGTAAGTCACCGGCACGTTGAGGATGCGGCCCAGGGTCTTGAGCTGTTCCTGAGCGCCGATACGGAAG < 2:211022/149‑1 GCGCTCAGGAACAGCTCAAGACCCTGGGCCGCATCCTCAACGTGCCGGTGACTTACGTCGACCCGGGCCAGTCGCTGGCAGCAGCGCTGGAACCACTGCTGCGCAAGCGCGTGGTGCTGATCGATACTGCCGGCCTGCAAGCCAGCGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4933670‑4933522‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccagcgacTGGCCCGGGTCGACGTAAGTCACCGGCACGTTGAGGATGCGGCCCAGGGTCTTGAGCTGTTCCTGAGCGCCGATACGGAAG > NC_002947/4933601‑4933681 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |