New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4933522 =	58 (0.990)	4 (0.070)	3/240	NT	7.3%	coding (927/1308 nt)	flhF	flagellar biosynthesis protein FlhF
	?	NC_002947	4933601 =	48 (0.880)					coding (848/1308 nt)	flhF	flagellar biosynthesis protein FlhF

CAGCACCAGGTAGTTCTTCGCGGCAATGCCACGCCCGGCCAAGGTTTCCAGTTGCATGCGCAGTGCAGGGTCGCTGGCTTGCAGGCCGGCAGTATCGATCAGCACCACGCGCTTGCGCAGCAGTGGTTCCAGCGCTGCTGCCAGCGACTGGCCCGGGTCGACGTAAGTCACCGGCA‑CGTTGAGGATGCGGCCCAGGGTCTTGAGCTGTTCCTGAGCGCCGATACGGAAGCTGTCCATGCTCACCAGCGCCAGGTTCTGCGCGCCGTACTTGAGCACGTAGCGC  >  NC_002947/4933453‑4933735                                                                                                                                                     |                                                                                                                                        cAGCACCAGGTAGTTCTTCGCGACAATGCCACGCCCGGCCAAGGTTTCCAGTTGCATGCGCAGTGCAGGGTCGCTGGCTTGCAGGCCGGCAGTATCGATCAGCACCACGCGCTTGCGCAGCAGTGGTTCCAGCGCTGCTGCCAGCGACt                                                                                                                                         >  1:280362/1‑149 (MQ=255)  aGCACCAGGTAGTTCTTCGCGGCAATGCCACGCCCGGCCAAGGTTTCCAGTTGCATGCGCAGGGCAGGGTCGCTGGCTTGCAGGCCGGCAGTATCGATCAGCACCACGCGCTTGCGCAGCAGTGGTTCCAGCGCTGCTGCCAGCGACTg                                                                                                                                        <  8:76146/149‑1 (MQ=255)           tAGTTCTTCGCGGCAATGCCACGCCCGGCCAAGGTTTCCAGTTGCATGCGCAGTGCAGGGTCGCTGGCTTGCAGGCCGGCAGTATCGATCAGCACCACGCGCTTGCGCAGCAGTGGTTCCAGCGCTGCTGCCAGCGACTGGCCCGGGTc                                                                                                                               >  7:62595/1‑149 (MQ=255)             gTTCTTCGCGGCAATGCCACGCCCGGCCAAGGTTTCCAGTTGCATGCGCAGTGCAGGGTCGCTGGCTTGCAGGCCGGCAGTATCGATCAGCACCACGCGCTTGCGCAGCAGTGGTTCCAGCGCTGCTGCCAGCGACTGGCCCGGGTCGa                                                                                                                             >  3:228439/1‑149 (MQ=255)               tcttcGCGGCAATGCCACGCCCGGCCAAGGTTTCCAGTTGCATGCGCAGTGCAGGGTCGCTGGCTTGCAGGCCGGCAGTATCGATCAGCACCACGCGCTTGCGCAGCAGTGGTTCCAGCGCTGCTGCCAGCGACTGGCCCGGGTc                                                                                                                               >  6:359180/1‑145 (MQ=255)               tcttcGCGGCAATGCCACGCCCGGCCAAGGTTTCCAGTTGCATGCGCAGTGCAGGGTCGCTGGCTTGCAGGCCGGCAGTATCGATCAGCACCACGCGCTTGCGCAGCAGTGGTTCCAGCGCTGCTGCCAGCGACTGGCCCGGGTc                                                                                                                               <  5:359180/145‑1 (MQ=255)               tcttcGCGGCAATGCCACGCCCGGCCAAGGTTTCCAGTTGCATGCGCAGTGCAGGGTCGCTGGCTTGCAGGCCGGCAGTATCGATCAGCACCACGCGCTTGCGCAGCAGTGGTTCCAGCGCTGCTGCCAGCGACTGGCCCGGGTCGACg                                                                                                                           >  3:252681/1‑149 (MQ=255)                 ttcGCGGCAATGCCACGCCCGGCCAAGGTTTCCAGTTGCATGCGCAGTGCAGGGTCGCTGGCTTGCAGGCCGGCAGTATCGATCAGCACCACGCGCTTGCGCAGCAGTGGTTCCAGCGCTGCTGCCAGCGACTGGCCCGGGTCGACGt                                                                                                                          >  1:163463/1‑148 (MQ=255)                   cgcgGCAATGCCACGCCCGGCCAAGGTTTCCAGTTGCATGCGCAGTGCAGGGTCGCTGGCTTGCAGGCCGGCAGTATCGATCAGCACCACGCGCTTGCGCAGCAGTGGTTCCAGCGCTGCTGCCAGCGACTGGCCCGGGTCGACGTaa                                                                                                                        <  4:288542/148‑1 (MQ=255)                   cgcgGCAATGCCACGCCCGGCCAAGGTTTCCAGTTGCATGCGCAGTGCAGGGTCGCTGGCTTGCAGGCCGGCAGTATCGATCAGCACCACGCGCTTGCGCAGCAGTGGTTCCAGCGCTGCTGCCAGCGACTGGCCCGGGTCGACGTaa                                                                                                                        <  8:62595/148‑1 (MQ=255)                    gcgGCAATGCCACGCCCGGCCAAGGTTTCCAGTTGCATGCGCAGTGCAGGGTCGCTGGCTTGCAGGCCGGCAGTATCGATCAGCACCACGCGCTTGCGCAGCAGTGGTTCCAGCGCTGCTGCCAGCGACTGGCCCGGGTCGACGTaa                                                                                                                        <  5:242816/147‑1 (MQ=255)                    gcgGCAATGCCACGCCCGGCCAAGGTTTCCAGTTGCATGCGCAGTGCAGGGTCGCTGGCTTGCAGGCCGGCAGTATCGATCAGCACCACGCGCTTGCGCAGCAGTGGTTCCAGCGCTGCTGCCAGCGACTGGCCCGGGTCGACGTaa                                                                                                                        >  6:242816/1‑147 (MQ=255)                     cgGCAATGCCACGCCCGGCCAAGGTTTCCAGTTGCATGCGCAGTGCAGGGTCGCTGGCTTGCAGGCCGGCAGTATCGATCAGCACCACGCGCTTGCGCAGCAGTGGTTCCAGCGCTGCTGCCAGCGACTGGCCCGGGTCGACGTAAGTc                                                                                                                     <  2:16978/149‑1 (MQ=255)                         aaTGCCACGCCCGGCCAAGGTTTCCAGTTGCATGCGCAGTGCAGGGTCGCTGGCTTGCAGGCCGGCAGTATCGATCAGCACCACGCGCTTGCGCAGCAGTGGTTCCAGCGCTGCTGCCAGCGACTGGTCCGGGTCGACGTAAGTCACCg                                                                                                                 <  8:118170/149‑1 (MQ=255)                         aaTGCCACGCCCGGCCAAGGTTTCCAGTTGCATGCGCAGTGCAGGGTCGCTGGCTTGCAGGCCGGCAGTATCGATCAGCACCACGCGCTTGCGCAGCAGTGGTTCCAGCGCTGCTGCCAGCGACTGGCCCGGGTCGACGTAAGTCACCg                                                                                                                 >  4:236608/1‑149 (MQ=255)                             ccACGCCCGGCCAAGGTTTCCAGTTGCATGCGCAGTGCAGGGTCGCTGGCTTGCAGGCCGGCAGTATCGATCAGCACCACGCGCTTGCGCAGCAGTGGTTCCAGCGCTGCTGCCAGCGACTGGCCCGGGTCGACGTAAGTCACCGGCA‑c                                                                                                            >  6:286063/1‑149 (MQ=255)                              cACGCCCGGCCAAGGTTTCCAGTTGCATGCGCAGTGCAGGGTCGCTGGCTTGCAGGCCGGCAGTATCGATCAGCACCACGCGCTTGCGCAGCAGTGGTTCCAGCGCTGCTGCCAGCGACTGGCCCGGGTCGACGTAAGTCACCGGCA‑Cg                                                                                                           >  2:121053/1‑149 (MQ=255)                                  cccGGCCAAGGTTTCCAGTTGCATGCGCAGTGCAGGGTCGCTGGCTTGCAGGCCGGCAGTATCGATCAGCACCACGCGCTTGCGCAGCAGTGGTTCCAGCGCTGCTGCCAGCGACTGGCCCGGGTCGACGTAAGTCACCGGCA‑CGTTGa                                                                                                       <  4:290239/149‑1 (MQ=255)                                           ggTTTCCAGTTGCATGCGCAGTGCAGGGTCGCTGGCTTGCAGGCCGGCAGTATCGATCAGCACCACGCGCTTGCGCAGCAGTGGTTCCAGCGCTGCTGCCAGCGACTGGCCCGGGTCGACGTAAGTCACCGGCA‑CGTTGAGGATGCGGc                                                                                              <  5:287676/149‑1 (MQ=255)                                            gTTTCCAGTTGCATGCGCAGTGCAGGGTCGCTGGCTTGCAGGCCGGCAGTATCGATCAGCACCACGCGCTTGCGCAGCAGTGGTTCCAGCGCTGCTGCCAGCGACTGGCCCGGGTCGAc                                                                                                                            <  6:241785/119‑1 (MQ=255)                                            gTTTCCAGTTGCATGCGCAGTGCAGGGTCGCTGGCTTGCAGGCCGGCAGTATCGATCAGCACCACGCGCTTGCGCAGCAGTGGTTCCAGCGCTGCTGCCAGCGACTGGCCCGGGTCGAc                                                                                                                            >  5:241785/1‑119 (MQ=255)                                                 cAGTTGCATGCGCAGTGCAGGGTCGCTGGCTTGCAGGCCGGCAGTATCGATCAGCACCACGCGCTTGCGCAGCAGTGGTTCCAGCGCTGCTGCCAGCGACTGGCCCGGGTCGACGTAAGTCACCGGCA‑CGTTGAGGATGCGGCCCAggg                                                                                        >  2:291778/1‑149 (MQ=255)                                                       cATGCGCAGTGCAGGGTCGCTGGCTTGCAGGCCGGCAGTATCGATCAGCACCACGCGCTTGCGCAGCAGTGGTTCCAGCGCTGCTGCCAGCGACTGGCCCGGGTCGACGTAAGTCACCGGCA‑CGTTGAGGATGCGGCCCAGGGTCTTGa                                                                                  <  4:252681/149‑1 (MQ=255)                                                        aTGCGCAGTGCAGGGTCGCTGGCTTGCAGGCCGGCAGTATCGATCAGCACCACGCGCTTGCGCAGCAGTGGTTCCAGCGCTGCTGCCAGCGACTGGCCCGGGTCGACGTAAGTCACCGGCA‑CGTTGAGGATGCGGCCCAGGGTCTTGAg                                                                                 <  2:280362/149‑1 (MQ=255)                                                              aGTGCAGGGTCGCTGGCTTGCAGGCCGGCAGTATCGATCAGCACCACGCGCTTGCGCAGCAGTGGTTCCAGCGCTGCTGCCAGCGACTGGCCCGGGTCGACGTAAGTCACCGGCA‑CGTTGAGGATGCGGCCCAGGGTCTTGAGCTGTTc                                                                           <  4:228439/149‑1 (MQ=255)                                                                tGCAGGGTCGCTGGCTTGCAGGCCGGCAGTATCGATCAGCACCACGCGCTTGCGCAGCAGTGGTTCCAGCGCTGCTGCCAGCGACTGGCCCGGGTCGACGTAAGTCACCGGCA‑CGTTGAGGATGCGGCCCAGGGTCTTGAGCTGTTCCt                                                                         <  3:64052/149‑1 (MQ=255)                                                                      gtcgctggcagcagcgctggaaccactgctgcgcaagcgcgtggtgctgatcgatactgccggcctgcaagccagcgacTGGCCCGGGTCGACGTAAGTCACCGGCA‑CGTTGAGGATGCGGCCCAGGGTCTTGAGCTGTTcc                                                                          >  3:292064‑M2/80‑142 (MQ=255)                                                                      gtcgctggcagcagcgctggaaccactgctgcgcaagcgcgtggtgctgatcgatactgccggcctgcaagccagcgacTGGCCCGGGTCGACGTAAGTCACCGGCA‑CGTTGAGGATGCGGCCCAGGGTCTTGAGCTGTTcc                                                                          <  4:292064‑M2/63‑1 (MQ=255)                                                                      gtcgctggcagcagcgctggaaccactgcagcgcaagcgcgtggtgctgatcgatactgccggcctgcaagccagcgacTGGCCCGGGTCGACGTAAGTCACCGGCA‑CGTTGAGGATGCGGCCCAGGGTCTTGAGCTGTTCCTGAgcgc                                                                   >  1:211022‑M2/80‑149 (MQ=255)                                                                      GTCGCTGGCTTGCAGGCCGGCAGTATGGATCAGCACCACGCGCTTGCGCAGCAGTGGTTCCAGCGCTGCTGCCAGCGACTGGCCCGGGTCGACGTAAGTCACCGGCA‑CGTTGAGGATGCGGCCCAGGGTCTTGAGCTGTTCCTGAgcgc                                                                   >  1:166042‑M1/1‑149 (MQ=255)                                                                      GTCGCTGGCTTGCAGGCCGGCAGTATCGATCAGCACCACGCGCTTGCGCAGCAGTGGTTCCAGCGCTGCTGCCAGCGACTGGCCCGGGTCGACGTAAGTCACCGGCA‑CGTTGAGGATGCGGCCCAGGGTCTTGAGCTGTTCCTGAgcgc                                                                   >  1:121053‑M1/1‑149 (MQ=255)                                                                              CTTGCAGGCCGGCAGTATCGATCAGCACCACGCGCTTGCGCAGCAGTGGTTCCAGCGCTGCTGCCAGCGACTGGCCCGGGTCGACGTAAGTCACCGGCA‑CGTTg                                                                                                        >  3:39207‑M1/1‑104 (MQ=255)                                                                              CTTGCAGGCCGGCAGTATCGATCAGCACCACGCGCTTGCGCAGCAGTGGTTCCAGCGCTGCTGCCAGCGACTGGCCCGGGTCGACGTAAGTCACCGGCA‑CGTTg                                                                                                        <  4:39207‑M1/104‑1 (MQ=255)                                                                                 gCAGGCCGGCAGTATCGATCAGCACCACGCGCTTGCGCAGCAGTGGTTCCAGCGCTGCTGCCAGCGACTGGCCCGGGTCGACGTAAGTCACCGGCA‑CGTTGAGGATGCGGCCCAGGGTCTTGAGCTGTTCCTGAGCGCCGATACGGa                                                          <  5:338699/147‑1 (MQ=255)                                                                                 cagcgctggaaccactgctgcgcaagcgcgtggtgctgatcgatactgccggcctgcaagccagcgacTGGCCCGGGTCGACGTAAGTCACCGGCA‑CGTTGAGGATGCGGCCCAGGGTCTTGAGCTGTTCCTGAGCGCCGATACGGAAg                                                        <  2:211022‑M2/81‑1 (MQ=255)                                                                                  cAGGCCGGCAGTATCGATCAGCACCACGCGCTTGCGCAGCAGTGGTTCCAGCGCTGCTGCCAGCGACTGGCCCGGGTCGACGTAAGTCACCGGCA‑CGTTGAGGATGCGGCCCAGGGTCTTGAGCTGTTCCTGAGCGCCGATACGGAAg                                                        <  4:52443/148‑1 (MQ=255)                                                                                     gCCGGCAGTATCGATCAGCACCACGCGCTTGCGCAGCAGTGGTTCCAGCGCTGCTGCCAGCGACTGGCCCGGGTCGACGTAAGTCACCGGCA‑CGTTGAGGATGCGGCCCAGGGTCTTGAGCTGTTCCTGAGCGCCGATACGGAAGCTGt                                                    <  1:301380/149‑1 (MQ=255)                                                                                      ccGGCAGTATCGATCAGCACCACGCGCTTGCGCAGCAGTGGTTCCAGCGCTGCTGCCAGCGACTGGCCCGGGTCGACGTAAGTCACCGGCA‑CGTTGAGGATGCGGCCCAGGGTCTTGAGCTGTTCCTGAGCGCCGATACGGAAGCTGTc                                                   <  8:143610/149‑1 (MQ=255)                                                                                           aGTATCGATCAGCACCACGCGCTTGCGCAGCAGTGGTTCCAGCGCTGCTGCCAGCGACTGGCCCGGGTCGACGTAAGTCACCGGCACCGTTGAGGATGCGGCCCAGGGTCTTGAGCTGTTCCTGAGCGCCGATACGGAAGCTGTCCATg                                               <  1:291778/149‑1 (MQ=255)                                                                                                 gATCAGCACCACGCGCTTGCGCAGCAGTGGTTCCAGCGCTGCTGCCAGCGACTGGCCCGGGTCGACGTAAGTCACCGGCA‑CGTTGAGGATGCGGCCCAGGGTCTTGAGCTGTTCCTGAGCGCCGATACGGAAg                                                        <  4:158020/133‑1 (MQ=255)                                                                                                  aTCAGCACCACGCGCTTGCGCAGCAGTGGTTCCAGCGCTGCTGCCAGCGACTGGCCCGGGTCGACGTAAGTCACCGGCA‑CGTTGAGGATGCGGCCCAGGGTCTTGAGCTGTTCCTGAGCGCCGATACGGAAGCTGTCCATGCTCACCAg                                       >  4:233500/1‑149 (MQ=255)                                                                                                   tCAGCTCCACGCGATTGCGCAGCAGTGGTTCCAGCGCTGCTGCCAGCGACTGGCCCGGGTCGACGTAAGTCACCGGCA‑CGTTGAGGATGCGGCCCAGGGTCTTGAGCTGTTCCTGAGCGCCGATACGGAAGCTGTCCATGCTCACCAgc                                      <  5:89677/149‑1 (MQ=255)                                                                                                   tCAGCACCACGCGCTTGCGCAGCAGTGGTTCCAGCGCTGCTGCCAGCGACTGGCCCGGGTCGACGTAAGTCACCGGCA‑CGTTGAGGATGCGGCCCAGGGTCTTGAGCTGTTCCTGAGCGCCGATACGGAAGCTGTCCATGCTCACCAgc                                      >  7:314289/1‑149 (MQ=255)                                                                                                      gCACCACGCGCTTGCGCAGCAGTGGTTCCAGCGCTGCTGCCAGCGACTGGCCCGGGTCGACGTAAGTCACCGGCA‑CGTTGAGGATGCGGCCCAGGGTCTTGAGCTGTTCCTGAGCGCCGATACGGAAGCTGTCCATGCTCACCAgcgc                                    >  2:311728/1‑148 (MQ=255)                                                                                                      gCACCAAGCGCTTGCGCAGCAGTGGTTACAGCGCTGCTGCCAGCGACTGGCCAGGGTAGAAGTAAGTCACATTCA‑CGTTGAGGATGCGGCCCAGGGTCTTGAGCTGTTCCAGAGCGCAGATACGGAAGCTGTCCATGATCACCAgcgc                                    >  1:228095/1‑148 (MQ=255)                                                                                                        accacGCGCTTGCGCAGCAGTGGTTCCAGCGCTGCTGCCAGCGACTGGCCCGGGTCGACGTAAGTCACCGGCA‑CGTTGAGGATGCGGCCCAGGGTCTTGAGCTGTTCCTGAGCGCCGATACGGAAGCTGTCCATGCTCACCAGCGCCAg                                 >  5:270052/1‑149 (MQ=255)                                                                                                         ccacGCGCTTGCGCAGCAGTGGTTCCAGCGCTGCTGCCAGCGACTGGCCCGGGTCGACGTAAGTCACCGGCA‑CGTTGAGGATGCGGCCCAggg                                                                                        <  4:139575/93‑1 (MQ=255)                                                                                                         ccacGCGCTTGCGCAGCAGTGGTTCCAGCGCTGCTGCCAGCGACTGGCCCGGGTCGACGTAAGTCACCGGCA‑CGTTGAGGATGCGGCCCAggg                                                                                        >  3:139575/1‑93 (MQ=255)                                                                                                         ccacGCGCTTGCGCAGCAGTGGTTCCAGCGCTGCTGCCAGCGACTGGCCCGGGTCGACGTAAGTCACCGGCA‑CGTTGAGGATGCGGCCCAgg                                                                                         >  5:185502/1‑92 (MQ=255)                                                                                                         ccacGCGCTTGCGCAGCAGTGGTTCCAGCGCTGCTGCCAGCGACTGGCCCGGGTCGACGTAAGTCACCGGCA‑CGTTGAGGATGCGGCCCAgg                                                                                         <  6:185502/92‑1 (MQ=255)                                                                                                                   gcgcAGCAGTGGTTCCAGCGCTGCTGCCAGCGACTGGCCCGGGTCGACGTAAGTCACCGGCA‑CGTTGAGGATGCGGCCCAGGGTCTTGAGCTGTTCCTGAGCGCCGATACGGAAGCTGTCCATGCTCACCAGCGCCAGGTTCTgcgc                        <  1:311728/147‑1 (MQ=255)                                                                                                                     gcagcaGTGGTTCCAGCGCTGCTGCCAGCGACTGGCCCGGGTCGACGTAAGTCACCGGCA‑CGTTGAGGATGCGGCCCAGGGTCTTGAGCTGTTCCTGAGCGCCGATACGGAAGCTGTCCATGCTCACCAGCGCCAGGTTCTGCGCGCCg                    >  2:310502/1‑149 (MQ=255)                                                                                                                     gcagcaGTGGTTCCAGCGCTGCTGCCAGCGACTGGCCCGGGTCGACGTAAGTCACCGGCA‑CGTTGAGGATGCGGCCCAGGGTCTTGAGCTGTTCCTGAGCGCCGATACGGAAGCTGTCCATGCTCACCAGCGCCAGGTTCTGCGCGCCg                    >  6:198782/1‑149 (MQ=255)                                                                                                                     gcagcaGTGGTTCCAGCGCTGCTGCCAGAGACTGGCCCGGTACGACGTAAGTAACCGGCA‑CGGTGATGATGAGGACAAGGGTCTTGAGCTGTTCATGATCACCGATACGGAAGCTGTCCATGCTCAGCAGCGCCAGGTTCTGCGCGCCg                    >  6:315341/1‑149 (MQ=255)                                                                                                                       agcagTGGTTCCAGCGCTGCTGCCAGCGACTGGCCCGGGTCGACGTAAGTCACCGGCA‑CGTTGAGGATGCGGCCCAGGGTCTTGAGCTGTTCCTGAGCGCCGATACGGAAGCTGTCCATGCTCACCAGCGCCAGGTTCTGCGCGCCGt                   >  8:6596/1‑148 (MQ=255)                                                                                                                          agTGGTTCCAGCGCTGCTGCCAGCGACTGGCCCGGGTCGACGTAAGTCACCGGCA‑CGTTGAGGATGCGGCCCAGGGTCTTGAGCTGTTCCTGAGCGCCGATACGGAAGCTGTCCATGCTCACCAGCGCCAGGTTCTGCGCGCCGTACtt               <  3:236608/149‑1 (MQ=255)                                                                                                                              gTTCCAGCGCTGCTGCCAGCGACTGGCCCGGGTCGACGTAAGTCACCGGCA‑CGTTGAGGATGCGGCCCAGGGTCTTGAGCTGTTCCTGAGCGCCGATACGGAAGCTGTCCATGCTCACCAGCGCCAGGTTCTGCGCGCCGTACTTGAGc           <  1:310502/149‑1 (MQ=255)                                                                                                                                   aGCGCTGCTGCCAGCGACTGGCCCGGGTCGACGTAAGTCACCGGCA‑CGTTGAGGATGCGGCCCAGGGTCTTGAGCTGTTCCTGAGCGCCGATACGGAAGCTGTCCATGCTCACCAGCGCCAGGTTCTGCGCGCCGTACTTGAGCACGTa      <  8:314289/149‑1 (MQ=255)                                                                                                                                       ctgctgCCAGCGACTGGCCCGGGTCGACGTAAGTCACCGGCA‑CGTTGAGGATGCGGCCCAGGGTCTTGAGCTGTTCCTGAGCGCCGATACGGAAGCTGTCCATGCTCACCAGCGCCAGGTTCTGCGCGCCGTACTTGAGCACGTAgcgc  <  7:6596/149‑1 (MQ=255)                                                                                                                                                     tGGCCCGGGTCGACGTAAGTCACCGGCA‑CGTTGAGGATGCGGCCCAGGGTCTTGAGCTGTTCCTGAGCGCCGATACGGAAGCTGTCCATGCTCACCAGCGCCAGGTTCTGCGCGCCGTACTTGa             >  6:343225/1‑124 (MQ=255)                                                                                                                                                     tGGCCCGGGTCGACGTAAGTCACCGGCA‑CGTTGAGGATGCGGCCCAGGGTCTTGAGCTGTTCCTGAGCGCCGATACGGAAGCTGTCCATGCTCACCAGCGCCAGGTTCTGCGCGCCGTACTTGa             <  5:343225/124‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                        CAGCACCAGGTAGTTCTTCGCGGCAATGCCACGCCCGGCCAAGGTTTCCAGTTGCATGCGCAGTGCAGGGTCGCTGGCTTGCAGGCCGGCAGTATCGATCAGCACCACGCGCTTGCGCAGCAGTGGTTCCAGCGCTGCTGCCAGCGACTGGCCCGGGTCGACGTAAGTCACCGGCA‑CGTTGAGGATGCGGCCCAGGGTCTTGAGCTGTTCCTGAGCGCCGATACGGAAGCTGTCCATGCTCACCAGCGCCAGGTTCTGCGCGCCGTACTTGAGCACGTAGCGC  >  NC_002947/4933453‑4933735

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.