New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4973886 =	54 (0.920)	3 (0.050)	3/240	NT	6.0%	coding (1718/2043 nt)	flgK	flagellar hook‑associated protein FlgK
	?	NC_002947	4973962 =	44 (0.800)					coding (1642/2043 nt)	flgK	flagellar hook‑associated protein FlgK

ACAACAAGTTGTCCATCGCCGTGCCGATGCTGGATGCGGCCGGCGACCCGATTCTGGATGGTAGCGGTAACCCGCGTACCTTTGCCGTCGAGACCACAATCGGTGGCAGCCCTGCGGCCAATGACAGCTTTACCCTGTCGTTCAATGCCGACGGCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4974042‑4973886 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgacggcaaAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCGCCGGCCGCATCCAGCATCGGCACGGCGATGGACAACTTGTTGTCCTGCCCAGGCACCACGCTGCCGGTACCAATCTGGGTACCCTTGGCGTCGAACAGCTTGTAGCCCT  >  NC_002947/4973962‑4974108                                                                                                                                                                                                                                                                                                                  ACAACAAGTTGTCCATCGCCGTGCCGATGCTGGATGCGGCCGGCGACCCGATTCTGGATGGTAGCGGTAACCCGCGTACCTTTGCCGTCGAGACCACAATCGGTGGCAGCCCTGCGGCCAATGACAGCTTTACCCTGTCGTTCAATGCC                                                                                                                                                             >  1:326238/1‑149   AACAAGTTGTCCATCGCCGTGCCGATGCTGGATGCGGCCGGCGACCCGATTCTGGATGGTAGCGGTAACCCGCGTACCTTTGCCGTCGAGACCACAATCGGTGGCAGCCCTGCGGCCAATGACAGCTTTACCCTGTCGTTCAATGCCGA                                                                                                                                                           >  5:107120/1‑149    ACAAGTTGTCCATCGCCGTGCCGATGCTGGATGCGGCCGGCGACCCGATTCTGGATGGTAGCGGTAACCCGCGTACCTTTGCCGTCGAGACCACAATCGGTGGCAGCCCTGCGGCCAATGACAGCTTTACCCTGTCGTTCAATGCCGAC                                                                                                                                                          <  4:346880/149‑1                                                                              ACCTTTGCCGTCGAGACCACAATCGGTGGCAGCCCTGCGGCCAATGACAGCTTTACCCTGTCGTTCAATGCCGACGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCGCCGGCCGCATCCAGCATCGGCACGGCGATG                                                                                 >  7:311809/1‑148                                                                                 TTTGCCGTCGAGACCACAATCGGTGGCAGCCCTGCGGCCAATGACAGCTTTACCCTGTCGATCAATGCCGACGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCGCCGGCCGCATCCAGCATCGGCACGGCGATGGAC                                                                              >  2:104178/1‑148                                                                                                                   CGGCCAATGACAGCTTTACCCTGTCGTTCAATGCCGACGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCGCCGGCCGCATCCAGCATCGGCACGGCGATGGACAACTTGTTGTCCTGCCCAGGCACCACGCTGCCGGT                                           <  8:311809/149‑1                                                                                                                                                      GACGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCGCCGGCCGCATCCAGCATCGGCACGGCGATGGACAACTTGTTGTCCTGCCCAGGCACCACGCTGCCGGTACCAATCTGGGTACC                            <  7:17549/129‑1                                                                                                                                                      GACGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCGCCGGCCGCATCCAGCATCGGCACCGCGATGGACAACTTGTTGTCCTGCCCAGGCACCACGCAGCCCGTACCAATCTGGCTACC                            >  8:17549/1‑129                                                                                                                                                           CAAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCGCCGGCCGCATCCAGCATCGGCACGGCGATGGACAACTTGTTGTCCTGCCCAGGCACCACGCTGCCGGTACCAATCTGGGTACCCTTGGCGTCGAACAGCTTGTAGCCC   >  3:276939/1‑149                                                                                                                                                            AAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCGCCGGCCGCATCCAGCATCGGCACGGCGATGGACAACTTGTTGTCCTGCCCAGGCACCACGCTGCCGGTACCAATCTGGGTACCCTTGGCGTCGAACAGCTTGTAGCCCT  >  1:266232/1‑149                                                                                                                                                            AAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCGCCGGCCGCATCCAGCATCGGCACGGCGATGGACAACTTGTTGTCCTGCCCAGGCACCACGCTGCCGGTACCAATCTGGGTACCCTTGGCGTCGAACAGCTTGTAGCCCT  >  6:272232/1‑149                                                                                                                                                            AAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCGCCGGCCGCATCCAGCATCGGCACGGCGATGGACAACTTGTTGTCCTGCCCAGGCACCACGCTGCCGGTACCAATCTGGGTACCCTTGGCGTCGAACAGCTTGTAGCCCT  >  6:278640/1‑149                                                                                                                                                            AAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCGCCGGCCGCATCCAGCATCGGCACGGCGATGGACAACTTGTTGTCCTGCCCAGGCACCACGCTGCCGGTACCAATCTGGGTACCCTTGGCGTCGAACAGCTTGTAGCCCT  >  8:114198/1‑149                                                                                                                                                                                                                                                                                                                  ACAACAAGTTGTCCATCGCCGTGCCGATGCTGGATGCGGCCGGCGACCCGATTCTGGATGGTAGCGGTAACCCGCGTACCTTTGCCGTCGAGACCACAATCGGTGGCAGCCCTGCGGCCAATGACAGCTTTACCCTGTCGTTCAATGCCGACGGCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4974042‑4973886 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgacggcaaAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCGCCGGCCGCATCCAGCATCGGCACGGCGATGGACAACTTGTTGTCCTGCCCAGGCACCACGCTGCCGGTACCAATCTGGGTACCCTTGGCGTCGAACAGCTTGTAGCCCT  >  NC_002947/4973962‑4974108

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.