New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4973886 =	54 (0.920)	3 (0.050)	3/240	NT	6.0%	coding (1718/2043 nt)	flgK	flagellar hook‑associated protein FlgK
	?	NC_002947	4973962 =	44 (0.800)					coding (1642/2043 nt)	flgK	flagellar hook‑associated protein FlgK

TGCCGGAATTGGTGCCCACGGTCGACTTGGTCTGCAGGTCCAGCAGCGCGTTGGCATTGCGGTTGTCCGCCTTGCCGTCGGCATTGAACGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCGCCGGCCGCATCCAGCATCGGCACGGCGATGGACAACTTGTTGTCCTGCCCAGGCACCACGCTGCCGGTACCAATCTGGGTACCCTTGGCGTCGAACAGCTTGTAGCCCT  >  NC_002947/4973815‑4974108                                                                                                                                                    |                                                                                                                                                   tGCCGGAATTGGTGCCCACGGTCGACTTGGTCTGCAGGTCCAGCAGCGCTTTGGCATTGCGGTTGTCCGCCTTGCCGTCGGCATTGAACGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAg                                                                                                                                                   <  2:98342/149‑1 (MQ=255) gtccatcgccgtgccgatgctggatgcggccggcgacccgattctggatggtagcggtaacccgcgtacctTTGCCGTCGGCATTGATCGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCaaa                                                                                                                                                    >  2:104178‑M1/72‑148 (MQ=255)    catcgccgtgccgatgctggatgcggccggcgacccgattctggatggtagcggtaacccgcgtacctTTGCCGTCGGCATTGAACGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGt                                                                                                                                                 >  7:311809‑M1/69‑148 (MQ=255)         ttGGTGCCCACGGTCGACTTGGTCTGCAGGTCCAGCAGCGCGTTGGCATTGCGGTTGTCCGCCCTGCCGTCGGCATTGAACGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCgg                                                                                                                                           <  7:178549/149‑1 (MQ=255)            gTGCCCACGGTCGACTTGGTCTGCAGGTCCAGCAGCGCGTTGGCATTGCGGTTGTCCGCCTTGCCGTCGGCATTGAACGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGt                                                                                                                                         <  7:319454/148‑1 (MQ=255)              gCCCACGGTCGACTTGGTCTGCAGGTCCAGCAGCGCGTTGGCATTGCGGTTGTCCGCCTTGCCGTCGGCATTGAACGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTAc                                                                                                                                      <  2:31145/149‑1 (MQ=255)              gCCCACGGTCGACTTGGTCTGCAGGTCCAGCAGCGCGTTGGCATTGCGGTTGTCCGCCTTGCCGTCGGCATTGAACGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTAc                                                                                                                                      >  4:302404/1‑149 (MQ=255)                ccACGGTCGACTTGGTCTGCAGGTCCAGCAGCGCGTTGGCATTGCGGTTGTCCGCCTTGCCGTCGGCATTGAACGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTACCg                                                                                                                                    >  3:261773/1‑149 (MQ=255)                 cACGGGAGACTTCGTCTGCAGGTCCATCAGCGCGTTGGCATTGCGGTTGTACGCGTTTCAGTCGGCATTCAACGACAGGGTAAAGCTGTCATTGGCCGCTGGGCTGCCACCGATTTTGGTCTCGACGGCAAAGGTACGCGGGTTAcctc                                                                                                                                   <  8:73578/149‑3 (MQ=255)                  aCGGTCGACTTGGTCTGCAGGTCCAGCAGCGCGTTGGCATTGCGGTTGTCCGCCTTGCCGTCGGCATTGAACGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCCCCGAGTGTGGTGTCGACGGCAAAGGTACGCGGGGTACCGCt                                                                                                                                  >  2:326238/1‑149 (MQ=255)                        gACTTGGTCTGCAGGTCCAGCAGCGCGTTGGCATTGCGGTTGTCCGCCTTGCCGTCGGCATTGAACGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGCACGCGGGTTACCGCTACCATc                                                                                                                            >  2:298593/1‑149 (MQ=255)                         aCTTGGTCTGCAGGTCCAGCAGCGCGTTGGCATTGCGGTTGTCCGCCTTGCCGTCGGCATTGAACGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTACCGCTACCATcc                                                                                                                           <  4:261773/149‑1 (MQ=255)                         aCTTGGTCTGCAGGTCCAGCAGCGCGTTGGCATTGCGGTTGTCCGCCTTGCCGTCGGCATTGAACGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTACCGCTACCATcc                                                                                                                           <  3:302404/149‑1 (MQ=255)                                  gCAGGTCCAGCAGCGCGTTGGCATTGCGGTTGTCCGCCTTGCCGTCGGCATTGAACGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCggg                                                                                                                  >  1:372549/1‑149 (MQ=255)                                   cAGGTCCAGCAGCGCGTTGGCATTGCGGTTGTCCGCCTTGCCGTCGGCATTGAACGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTCACCGCTACCATCCAGAATCgg                                                                                                                   <  6:335811/147‑1 (MQ=255)                                      gTCCAGCAGCGCGTTGGCATTGCGGTTGTCCGCCTTGCCGTCGGCATTGAACGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAg                                                                                                                                                   <  5:265137/112‑1 (MQ=255)                                      gTCCAGCAGCGCGTTGGCATTGCGGTTGTCCGCCTTGCCGTCGGCATTGAACGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAg                                                                                                                                                   >  6:265137/1‑112 (MQ=255)                                       tCCAGCAGCGCGTTGGCATTGCGGTTGTCCGCCTTGCCGTCGGCATTGAACGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCgcc                                                                                                             >  8:10744/1‑149 (MQ=255)                                         cagcagCGCGTTGGCATTGCGGTTGTCCGCCTTGCCGTCGGCATTGAACGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAg                                                                                                                                                   <  1:246266/109‑1 (MQ=255)                                         cagcagCGCGTTGGCATTGCGGTTGTCCGCCTTGCCGTCGGCATTGAACGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAg                                                                                                                                                   >  2:246266/1‑109 (MQ=255)                                           gcagcGCGTTGGCATTGCGGTTGTCCGCCTTGCCGTCGGCATTGAACGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCgccggcc                                                                                                         >  2:347531/1‑149 (MQ=255)                                             agcGCGTTGGCATTGCGGTTGTCCGCCTTGCCGTCGGCATTGAACGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCGCCGGCCGc                                                                                                       <  2:203043/149‑1 (MQ=255)                                                  gTTGGCATTGCGGTTGTCCGCCTTGCCGTCGGCATTGAACGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTc                                                                                                                >  1:224644/1‑135 (MQ=255)                                                  gTTGGCATTGCGGTTGTCCGCCTTGCCGTCGGCATTGAACGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTc                                                                                                                <  2:224644/135‑1 (MQ=255)                                                      gCATTGCGGTTGTCCGCCTTGCCGTCGGCATTGAACGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCGCCGGCCGCATCCAGCAt                                                                                              <  2:372549/149‑1 (MQ=255)                                                      gCATTGCGGTTGTCCGCCTTGCCGTCGGCATTGAACGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCGCCGGCCGCATCCAGCAt                                                                                              >  6:107120/1‑149 (MQ=255)                                                        aTTGCGGTTGTCCGCCTTGCCGTCGGCATTGAACGACAGGGTAATGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCgg                                                                                                                   >  3:115134/1‑126 (MQ=255)                                                        aTTGCGGTTGTCCGCCTTGCCGTCGGCATTGAACGACAGGGTAATGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCgg                                                                                                                   <  4:115134/126‑1 (MQ=255)                                                            cGGTTGTCCGCCTTGCCGTCGGCATTGAACGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCGCCGGCCGCATcc                                                                                                   <  7:321375/138‑1 (MQ=255)                                                            cGGTTGTCCGCCTTGCCGTCGGCATTGAACGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCGCCGGCCGCATcc                                                                                                   >  8:321375/1‑138 (MQ=255)                                                                   ccGCCTTGCCGTCGGCATTGAACGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCGCCGGCCGCATCCAGCATCGGCACGGCGATg                                                                                 >  1:33904/1‑149 (MQ=255)                                                                    cGCCTTGCCGTCGGCATTGAACGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCGCCGGCCGCATCCAGCATCGGCACGGCGATg                                                                                 <  8:231751/148‑1 (MQ=255)                                                                    acctttgccgtcgagaccacaatcggtggcagccctgcggccaatgacagctttaccctgtcgttcaatgccgacggcaaAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCGCCGGCCGCATCCAGCATCGGCACGGCGATg                                                                                 >  7:311809‑M2/81‑148 (MQ=255)                                                                       tttgccgtcgagaccacaatcggtggcagccctgcggccaatgacagctttaccctgtcgatcaatgccgacggcaaAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCGCCGGCCGCATCCAGCATCGGCACGGCGATGGAc                                                                              >  2:104178‑M2/78‑148 (MQ=255)                                                                       cTTGCCGTCGGCATTGAACGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTAc                                                                                                                                      <  7:354126/92‑1 (MQ=255)                                                                       cTTGCCGTCGGCATTGAACGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTAc                                                                                                                                      >  8:354126/1‑92 (MQ=255)                                                                             GTCGGCATTGAACGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCGCCGGCCGCATCCAGCATCGGCACGGCGATGGACAACttgt                                                                       <  4:346880‑M1/149‑1 (MQ=255)                                                                              TCGGCATTGAACGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCGCCGGCCGCATCCAGCATCGGCACGGCGATGGACAACttgtt                                                                      >  5:107120‑M1/1‑149 (MQ=255)                                                                                GGCATTGAACGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCGCCGGCCGCATCCAGCATCGGCACGGCGATGGACAACTtgttgt                                                                    >  1:326238‑M1/1‑149 (MQ=255)                                                                                 gCATTGAACGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGCACGCGGGTTACCGCTACCATCCAGAATCGGGTCGCCGGCCGCATCCAGCATCGGCACGGCGATGGACAACTTGTTGTc                                                                   <  1:298593/149‑1 (MQ=255)                                                                                   aTTGAACGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTACCGCTACCATc                                                                                                                            <  2:229435/90‑1 (MQ=255)                                                                                       aaCGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCGCCGGCCGCATCCAGCATCGGCACGGCGATGGACAACTTGTTGTCCTGcc                                                              >  6:174518/1‑148 (MQ=255)                                                                                         cGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGTAcg                                                                                                                                              <  7:10941/66‑1 (MQ=255)                                                                                         cGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGTAcg                                                                                                                                              >  8:10941/1‑66 (MQ=255)                                                                                             aGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCGCCGGCCGCATCCAGCATCGGCACGGCGATGGACAACTTGTTGTCCTGCCCAGGcac                                                       >  1:303987/1‑149 (MQ=255)                                                                                                     gCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCGCCGGCCGCATCCAGCATCGGCACGGCGATGGACAACTTGTTGTCCTGCCCAGGCACCACGCTGc                                               <  2:33904/149‑1 (MQ=255)                                                                                                      cTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGGCGCCGGCCGCATCCAGCATCGGCACGGCGATGGACAACTTGTTGTCCTGCCCAGGCACCACGCTGcc                                              <  5:193651/149‑1 (MQ=255)                                                                                                       tGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCGCCGGCCGCATCCAGCATCGGCACGGCGATGGACAACTTGTTGTCCTGCCCAGGCACCACGCTGCCg                                             >  3:158345/1‑149 (MQ=255)                                                                                                         cggccaatgacagctttaccctgtcgttcaatgccgacggcaaAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCGCCGGCCGCATCCAGCATCGGCACGGCGATGGACAACTTGTTGTCCTGCCCAGGCACCACGCTGCCGGt                                           <  8:311809‑M2/106‑1 (MQ=255)                                                                                                           aTTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCGCCGGCCGCATCCAGCATCGGCACGGCGATGGACAACTTGTTGTCCTGCCCAGGCACCACGCTGCCGGTa                                          <  3:346880/148‑1 (MQ=255)                                                                                                               gCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCGCCGGCCGCATCCAGCATCGGCACGGCGATGGACAACTTGTTGTCCTGCCCAGGCACCACGCTGCCGGTAc                                         <  7:78519/145‑1 (MQ=255)                                                                                                               gCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCGCCGGCCGCATCCAGCATCGGCACGGCGATGGACAACTTGTTGTCCTGCCCAGGCACCACGCTGCCGGTAc                                         >  8:78519/1‑145 (MQ=255)                                                                                                                   cAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCGCCGGCCGCATCCAGCATCGGCACGGCGATGGACAACTTGTTGTCCTGCCCAGGCACCACGCTGCCGGTACCAATCTgg                                 <  3:94941/149‑1 (MQ=255)                                                                                                                         tGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCGCCGGCCGCATCCAGCATCGGCACGGCGATGGACAACTTGTTGTCCTGCCCAGGcaccac                                                    >  7:228129/1‑124 (MQ=255)                                                                                                                         tGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCGCCGGCCGCATCCAGCATCGGCACGGCGATGGACAACTTGTTGTCCTGCCCAGGcaccac                                                    <  8:228129/124‑1 (MQ=255)                                                                                                                           ccACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCGCCGGCCGCATCCAGCATCGGCACGGCGATGGACAACTTGTTGTCCTGCCCAGGCACCACGCTGCCGGTACCAATCTGGGTACCCt                          <  1:347531/148‑1 (MQ=255)                                                                                                                            cACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCGCCGGCCGCATCCAGCATCGGCACGGCGATGGACAACTTGTTGTCCTGCCCAGGCACCACGCTGCCGGTACCCAGATTGGTAccggca                        <  2:303987/149‑5 (MQ=255)                                                                                                                                            gacggcaaAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCGCCGGCCGCATCCAGCATCGGCACGGCGATGGACAACTTGTTGTCCTGCCCAGGCACCACGCTGCCGGTACCAATCTGGGTAcc                            <  7:17549‑M2/121‑1 (MQ=255)                                                                                                                                            gacggcaaAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCGCCGGCCGCATCCAGCATCGGCACCGCGATGGACAACTTGTTGTCCTGCCCAGGCACCACGCAGCCCGTACCAATCTGGCTAcc                            >  8:17549‑M2/9‑129 (MQ=255)                                                                                                                                                 caaAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCGCCGGCCGCATCCAGCATCGGCACGGCGATGGACAACTTGTTGTCCTGCCCAGGCACCACGCTGCCGGTACCAATCTGGGTACCCTTGGCGTCGAACAGCTTGTAGccc   >  3:276939‑M2/4‑149 (MQ=255)                                                                                                                                                  aaAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCGCCGGCCGCATCCAGCATCGGCACGGCGATGGACAACTTGTTGTCCTGCCCAGGCACCACGCTGCCGGTACCAATCTGGGTACCCTTGGCGTCGAACAGCTTGTAGCCCt  >  1:266232‑M2/3‑149 (MQ=255)                                                                                                                                                  aaAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCGCCGGCCGCATCCAGCATCGGCACGGCGATGGACAACTTGTTGTCCTGCCCAGGCACCACGCTGCCGGTACCAATCTGGGTACCCTTGGCGTCGAACAGCTTGTAGCCCt  >  8:114198‑M2/3‑149 (MQ=255)                                                                                                                                                  aaAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCGCCGGCCGCATCCAGCATCGGCACGGCGATGGACAACTTGTTGTCCTGCCCAGGCACCACGCTGCCGGTACCAATCTGGGTACCCTTGGCGTCGAACAGCTTGTAGCCCt  >  6:278640‑M2/3‑149 (MQ=255)                                                                                                                                                  aaAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCGCCGGCCGCATCCAGCATCGGCACGGCGATGGACAACTTGTTGTCCTGCCCAGGCACCACGCTGCCGGTACCAATCTGGGTACCCTTGGCGTCGAACAGCTTGTAGCCCt  >  6:272232‑M2/3‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                   TGCCGGAATTGGTGCCCACGGTCGACTTGGTCTGCAGGTCCAGCAGCGCGTTGGCATTGCGGTTGTCCGCCTTGCCGTCGGCATTGAACGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCGCCGGCCGCATCCAGCATCGGCACGGCGATGGACAACTTGTTGTCCTGCCCAGGCACCACGCTGCCGGTACCAATCTGGGTACCCTTGGCGTCGAACAGCTTGTAGCCCT  >  NC_002947/4973815‑4974108

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.