New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4973886 =	54 (0.920)	3 (0.050)	3/240	NT	6.0%	coding (1718/2043 nt)	flgK	flagellar hook‑associated protein FlgK
	?	NC_002947	4973962 =	44 (0.800)					coding (1642/2043 nt)	flgK	flagellar hook‑associated protein FlgK

TCAATGGTGGCCTGGCTGGCCTTGGCCCCTACCCGCTCGACCAGCGAGGCGTAGGCCGAGGTGAAGCTGGTACCGGTGCCGGAATTGGTGCCCACGGTCGACTTGGTCTGCAGGTCCAGCAGCGCGTTGGCATTGCGGTTGTCCGCCTTGCCGTCGGCATTGAACGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCGCCGGCCGCATCCAGCATCGGCACGGCGATG  >  NC_002947/4973739‑4974029                                                                                                                                                    |                                                                                                                                                agggctacaagctgttcgacgccaagggtacccagattggtaccggcagcgtggtgcctgggcaggacaacaagttgtccatcgccgtgccgatgctggatgcggccggcgacccgattctggatggtagcggtaacccgcgtaccttt                                                                                                                                                >  1:266232‑M1/148‑149 (MQ=255) agggctacaagctgttcgacgccaagggtacccagattggtaccggcagcgtggtgcctgggcaggacaacaagttgtccatcgccgtgccgatgctggatgcggccggcgacccgattctggatggtagcggtaacccgcgtaccttt                                                                                                                                                >  8:114198‑M1/148‑149 (MQ=255) agggctacaagctgttcgacgccaagggtacccagattggtaccggcagcgtggtgcctgggcaggacaacaagttgtccatcgccgtgccgatgctggatgcggccggcgacccgattctggatggtagcggtaacccgcgtaccttt                                                                                                                                                >  6:278640‑M1/148‑149 (MQ=255) agggctacaagctgttcgacgccaagggtacccagattggtaccggcagcgtggtgcctgggcaggacaacaagttgtccatcgccgtgccgatgctggatgcggccggcgacccgattctggatggtagcggtaacccgcgtaccttt                                                                                                                                                >  6:272232‑M1/148‑149 (MQ=255)  gggctacaagctgttcgacgccaagggtacccagattggtaccggcagcgtggtgcctgggcaggacaacaagttgtccatcgccgtgccgatgctggatgcggccggcgacccgattctggatggtagcggtaacccgcgtacctTTg                                                                                                                                               >  3:276939‑M1/147‑149 (MQ=255)  cAATGGTGGCCTGGCTGGCCTTGGCCCCTACCCGCTCGACCAGCGAGGCGTAGGCCGAGGTGAAGCTGGTACCGGTGCCGGAATTGGTGCCCACGGTCGACTTGGTCTGCAGGTCCAGCAGCGCGTTGGCATTGCGGTTGTCCGCCTTg                                                                                                                                               >  7:102455/1‑149 (MQ=255)   aaTGGTGGCCTGGCTGGCCTTGGCCCCTACCCGCTCGACCAGCGAGGCGTAGGCCGAGGTGAAGCTGGTACCGGTGCCGGAATTGGTGCCCACGGTCGACTTGGTCTGCAGGTCCAGCAGCGCGTTGGCATTGCGGTTGTCCGCCTTGc                                                                                                                                              >  4:137465/1‑149 (MQ=255)     tggtggCCTGGCTGGCCTTGGCCCCTACCCGCTCGACCAGCGAGGCGTAGGCCGAGGTGAAGCTGGTACCGGTGCCGGAATTGGTGCCCACGGTCGACTTGGTCTGCAGGTCCAGCAGCGCGTTGGCATTGCGGTTGTCCGCCTTGCCg                                                                                                                                            <  8:11917/149‑1 (MQ=255)                ctggcCTTGGCCCCTACCCGCTCGACCAGCGAGGCGTAGGCCGAGGTGAAGCTGGTACCGGTGCCGGAATTGGTGCCCACGGTCGACTTGGTCTGCAGGTCCAGCAGCGCGTTGGCATTGCGGTTGTCCGCCTTGCCGTCGGCATTGaa                                                                                                                                 <  5:212942/149‑1 (MQ=255)                     cTTGGCCCCTACCCGCTCGACCAGCGAGGCGTAGGCCGAGGTGAAGCTGGTACCGGTGCCGGAATTGGTGCCCACGGTCGACTTGGTCTGCAGGTCCAGCAGCGCGTTGGCATTGCGGTTGTCCGCCTTGCCGTCGGCATTGAACGa                                                                                                                              >  8:319454/1‑147 (MQ=255)                     cTTGGCCCCTACCCGCTCGACCAGCGAGGCGTAGGCCGAGGTGAAGCTGGTACCGGTGCCGGAATTGGTGCCCACGGTCGACTTGGTCTGCAGGTCCAGCAGCGCGTTGGCATTGCGGTTGTCCGCCTTGCCGTCGGCATTGAACGa                                                                                                                              >  6:193651/1‑147 (MQ=255)                         gCCCCTACCCGCTCGACCAGCGAGGCGTAGGCCGAGGTGAAGCTGGTACCGGTGCCGGAATTGGTGCCCACGGTCGACTTGGTCTGCAGGTCCAGCAGCGCGTTGGCATTGCGGTTGTCCGCCTTGCCGTCGGCATTGAACGACAggg                                                                                                                         <  3:137465/148‑1 (MQ=255)                           ggtagccagattggtacgggctgcgtggtgcctgggcaggacaacaagttgtccatcgcggtgccgatgctggatgcggccggcgacccgattctggatggtagcggtaacccgcgtacctTTGCCGTc                                                                                                                                          >  8:17549‑M1/122‑129 (MQ=255)                           ggtacccagattggtaccggcagcgtggtgcctgggcaggacaacaagttgtccatcgccgtgccgatgctggatgcggccggcgacccgattctggatggtagcggtaacccgcgtacctTTGCCGTc                                                                                                                                          <  7:17549‑M1/8‑1 (MQ=255)                              tACCCGCTCGACCAGCGAGGCGTAGGCCGAGGTGAAGCTGGTACCGGTGCCGGAATTGGTGCCCACGGTCGACTTGGTCTGCAGGTCCAGCAGCGCGTTGGCATTGCGGTTGTCCGCCTTGCCGTCGGCATTGAACGACAg                                                                                                                           >  3:270215/1‑141 (MQ=255)                              tACCCGCTCGACCAGCGAGGCGTAGGCCGAGGTGAAGCTGGTACCGGTGCCGGAATTGGTGCCCACGGTCGACTTGGTCTGCAGGTCCAGCAGCGCGTTGGCATTGCGGTTGTCCGCCTTGCCGTCGGCATTGAACGACAg                                                                                                                           <  4:270215/141‑1 (MQ=255)                                 ccGCTCGACCAGCGAGGCGTAGGCCGAGGTGAAGCTGGTACCGGTGCCGGAATTGGTGCCCACGGTCGACTTGGTCTGCAGGTCCAGCAGCGCGTTGGCATTGCGGTTGTCCGCCTTGCCGTCGGCATTGAACGACAGGGTAAAGCTGt                                                                                                                <  3:127301/149‑1 (MQ=255)                                 ccGCTCGACCAGCGAGGCGTAGGCCGAGGTGAAGCTGGTACCGGTGCCGGAATTGGTGCCCACGGTCGACTTGGTCTGCAGGTCCAGCAGCGCGTTGGCATTGCGGTTGTCCGCCTTGCCGTCGGCATTGAACGACAGGGTAAAGCTGt                                                                                                                >  1:14544/1‑149 (MQ=255)                                  cGCTCGACCAGCGAGGCGTAGGCCGAGGTGAAGCTGGTACCGGTGCCGGAATTGGTGCCCACGGTCGACTTGGTCTGCAGGTCCAGCAGCGCGTTGGCATTGCGGTTGTCCGCCTTGCCGt                                                                                                                                           <  4:203426/121‑1 (MQ=255)                                  cGCTCGACCAGCGAGGCGTAGGCCGAGGTGAAGCTGGTACCGGTGCCGGAATTGGTGCCCACGGTCGACTTGGTCTGCAGGTCCAGCAGCGCGTTGGCATTGCGGTTGTCCGCCTTGCCGt                                                                                                                                           >  3:203426/1‑121 (MQ=255)                                   gCTCGACCAGCGAGGCGTAGGCCGAGGTGATGCTGGTACCGGTGCCGGAATTGGTGCCCACGGTCGACTTGGTCTGCAGGTCCAGCAGCGCGTTGGCATTGCGGTTGTCCGCCTTGCCGTCGGCATTGAACGACAGGGTAAAGCTGTCa                                                                                                              >  1:31145/1‑149 (MQ=255)                                   gCTCGACCAGCGAGGCGTAGGCCGAGGTGAAGCTGGTACCGGTGCCGGAATTGGTGCCCACGGTCGACTTGGTCTGCAGGTCCAGCAGCGCGTTGGCATTGCGGTTGTCCGCCTTGCCGTCGGCATTGAACGACAGGGTAAAGCTGTCa                                                                                                              <  8:102455/149‑1 (MQ=255)                                          accggcagcgtggtgcctgggcaggacaacaagttgtccatcgccgtgccgatgctggatgcggccggcgacccgattctggatggtagcggtaacccgcgtacctTTGCCGTCGGCATTGAACGACAGGGTAAAGCTGTCATTGGCCg                                                                                                       <  8:311809‑M1/43‑1 (MQ=255)                                            gCGAGGCGTAGGCCGAGGTGAAGCTGGTACCGGTGCCGGAATTGGTGCCCACGGTCGACTTGGTCTGCAGGTCCAGCAGCGCGTTGGCATTGCGGTTGTCCGCCTTGCCGTCGGCATTGAACGACAGGGTAAAGCTGTCATTGGCCg                                                                                                       >  4:327346/1‑147 (MQ=255)                                                 gCGTAGGCCGAGGCGAAGCTGGTACCGGTGCCGGAATTGCTGCCCACGTTCGACTTGGGCTGCAGGTCCAGCAGCGCGTTGGCATTGCGGTTGTCCGCCTTGCCGTCGGCATTGAACGACAGGGTAAAGCTGTCATTGGCCGCAGGGCt                                                                                                <  8:312106/149‑1 (MQ=255)                                                      ggCCGAGGTGAAGCTGGTACCGGTGCCGGAATTGGTGCCCACGGTCGACTTGGTCTGCAGGTCCAGCAGCGCGTTGGCATTGCGGTTGTCCGCCTTGCCGTCGGCATTGAACGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCAc                                                                                           <  2:14544/149‑1 (MQ=255)                                                         cGAGGTGAAGCTGGTACCGGTGCCGGAATTGGTGCCCACGGTCGACTTGGTCTGCAGGTCCAGCAGCGCGTTGGCATTGCGGTTGTCCGCCTTGCCGTCGGCATTGAACGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGa                                                                                        >  1:203043/1‑149 (MQ=255)                                                             gTGAAGCTGGTACCGGTGCCGGAATTGGTGCCCACGGTCGACTTGGTCTGCAGGTCCAGCAGCGCGTTGGCATTGCGGTTGTCCGCCTTGCCGTCGGCATTGAACGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATtgt                                                                                    >  7:231751/1‑149 (MQ=255)                                                              tGAAGCTGGTACCGGTGCCGTAATTGGTGCCCACGGTCGACTTGGTCTGCAGGTACAGCAGCGCGTTGGCATTGCGGTTGTCCGCCTTGCCGTCGGCATTGAACGACAGGGTAAAGCTTTCATTGGCCGCAGGGCTGCCACCGATtgtg                                                                                   <  7:326214/149‑1 (MQ=255)                                                              tGAAGCTGGTACCGGTGCCGGAATTGGTGCCCACGGTCGACTTGGTCTGCAGGTCCAGCAGCGCGTTGGCATTGCGGTTGTCCGCCTTGCCGTCGGCATTGAACGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATtgtg                                                                                   <  1:311414/149‑1 (MQ=255)                                                                 aGCTGGTACCGGTGCCGGAATTGGTGCCCACGGTCGACTTGGTCTGCAGGTCCAGCAGCGCGTTGGCATTGCGGTTGTCAGCCTTGACGTCGGCATTGAACGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGtc                                                                                >  5:172681/1‑149 (MQ=255)                                                                      gTACCGGTGCCGGAATTGGTGCCCACGGTCGACTTGGTCTGCAGGTCCAGCAGCGCGTTGGCATTGCGGTTGTCCGCCTTGCCGTCGGCATTGAACGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCg                                                                             <  3:327346/147‑1 (MQ=255)                                                                             tGCCGGAATTGGTGCCCACGGTCGACTTGGTCTGCAGGTCCAGCAGCGCTTTGGCATTGCGGTTGTCCGCCTTGCCGTCGGCATTGAACGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAg                                                                    <  2:98342/149‑1 (MQ=255)                                                                             gtccatcgccgtgccgatgctggatgcggccggcgacccgattctggatggtagcggtaacccgcgtacctTTGCCGTCGGCATTGATCGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCaaa                                                                     >  2:104178‑M1/72‑148 (MQ=255)                                                                               ccGGAATTGGTGCCCACGGTCGACTTGGTCTGCAGGTCCAGCAGCGCGTTGGCATTGCGGTTGTCCGCCTTGCCGTCGGCATTGAACGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGc                                                                        <  3:175215/143‑1 (MQ=255)                                                                               ccGGAATTGGTGCCCACGGTCGACTTGGTCTGCAGGTCCAGCAGCGCGTTGGCATTGCGGTTGTCCGCCTTGCCGTCGGCATTGAACGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGc                                                                        >  4:175215/1‑143 (MQ=255)                                                                                catcgccgtgccgatgctggatgcggccggcgacccgattctggatggtagcggtaacccgcgtacctTTGCCGTCGGCATTGAACGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGt                                                                  >  7:311809‑M1/69‑148 (MQ=255)                                                                                     ttGGTGCCCACGGTCGACTTGGTCTGCAGGTCCAGCAGCGCGTTGGCATTGCGGTTGTCCGCCCTGCCGTCGGCATTGAACGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCgg                                                            <  7:178549/149‑1 (MQ=255)                                                                                        gTGCCCACGGTCGACTTGGTCTGCAGGTCCAGCAGCGCGTTGGCATTGCGGTTGTCCGCCTTGCCGTCGGCATTGAACGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGt                                                          <  7:319454/148‑1 (MQ=255)                                                                                          gCCCACGGTCGACTTGGTCTGCAGGTCCAGCAGCGCGTTGGCATTGCGGTTGTCCGCCTTGCCGTCGGCATTGAACGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTAc                                                       >  4:302404/1‑149 (MQ=255)                                                                                          gCCCACGGTCGACTTGGTCTGCAGGTCCAGCAGCGCGTTGGCATTGCGGTTGTCCGCCTTGCCGTCGGCATTGAACGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTAc                                                       <  2:31145/149‑1 (MQ=255)                                                                                            ccACGGTCGACTTGGTCTGCAGGTCCAGCAGCGCGTTGGCATTGCGGTTGTCCGCCTTGCCGTCGGCATTGAACGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTACCg                                                     >  3:261773/1‑149 (MQ=255)                                                                                             cACGGGAGACTTCGTCTGCAGGTCCATCAGCGCGTTGGCATTGCGGTTGTACGCGTTTCAGTCGGCATTCAACGACAGGGTAAAGCTGTCATTGGCCGCTGGGCTGCCACCGATTTTGGTCTCGACGGCAAAGGTACGCGGGTTAcctc                                                    <  8:73578/149‑3 (MQ=255)                                                                                              aCGGTCGACTTGGTCTGCAGGTCCAGCAGCGCGTTGGCATTGCGGTTGTCCGCCTTGCCGTCGGCATTGAACGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCCCCGAGTGTGGTGTCGACGGCAAAGGTACGCGGGGTACCGCt                                                   >  2:326238/1‑149 (MQ=255)                                                                                                  tCGACTTGGTCTGCAGGTCCAGCAGCGCGTTGGCATTGCGGTTGTCCGCCTTGCCGTCGGCATTGAACGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCAcc                                                                                          >  8:180154/1‑106 (MQ=255)                                                                                                  tCGACTTGGTCTGCAGGTCCAGCAGCGCGTTGGCATTGCGGTTGTCCGCCTTGCCGTCGGCATTGAACGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCAcc                                                                                          <  7:180154/106‑1 (MQ=255)                                                                                                    gACTTGGTCTGCAGGTCCAGCAGCGCGTTGGCATTGCGGTTGTCCGCCTTGCCGTCGGCATTGAACGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGCACGCGGGTTACCGCTACCATc                                             >  2:298593/1‑149 (MQ=255)                                                                                                     aCTTGGTCTGCAGGTCCAGCAGCGCGTTGGCATTGCGGTTGTCCGCCTTGCCGTCGGCATTGAACGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTACCGCTACCATcc                                            <  3:302404/149‑1 (MQ=255)                                                                                                     aCTTGGTCTGCAGGTCCAGCAGCGCGTTGGCATTGCGGTTGTCCGCCTTGCCGTCGGCATTGAACGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTACCGCTACCATcc                                            <  4:261773/149‑1 (MQ=255)                                                                                                              gCAGGTCCAGCAGCGCGTTGGCATTGCGGTTGTCCGCCTTGCCGTCGGCATTGAACGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCggg                                   >  1:372549/1‑149 (MQ=255)                                                                                                               cAGGTCCAGCAGCGCGTTGGCATTGCGGTTGTCCGCCTTGCCGTCGGCATTGAACGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTCACCGCTACCATCCAGAATCgg                                    <  6:335811/147‑1 (MQ=255)                                                                                                                  gTCCAGCAGCGCGTTGGCATTGCGGTTGTCCGCCTTGCCGTCGGCATTGAACGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAg                                                                    >  6:265137/1‑112 (MQ=255)                                                                                                                  gTCCAGCAGCGCGTTGGCATTGCGGTTGTCCGCCTTGCCGTCGGCATTGAACGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAg                                                                    <  5:265137/112‑1 (MQ=255)                                                                                                                   tCCAGCAGCGCGTTGGCATTGCGGTTGTCCGCCTTGCCGTCGGCATTGAACGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCgcc                              >  8:10744/1‑149 (MQ=255)                                                                                                                     cagcagCGCGTTGGCATTGCGGTTGTCCGCCTTGCCGTCGGCATTGAACGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAg                                                                    >  2:246266/1‑109 (MQ=255)                                                                                                                     cagcagCGCGTTGGCATTGCGGTTGTCCGCCTTGCCGTCGGCATTGAACGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAg                                                                    <  1:246266/109‑1 (MQ=255)                                                                                                                       gcagcGCGTTGGCATTGCGGTTGTCCGCCTTGCCGTCGGCATTGAACGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCgccggcc                          >  2:347531/1‑149 (MQ=255)                                                                                                                         agcGCGTTGGCATTGCGGTTGTCCGCCTTGCCGTCGGCATTGAACGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCGCCGGCCGc                        <  2:203043/149‑1 (MQ=255)                                                                                                                              gTTGGCATTGCGGTTGTCCGCCTTGCCGTCGGCATTGAACGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTc                                 >  1:224644/1‑135 (MQ=255)                                                                                                                              gTTGGCATTGCGGTTGTCCGCCTTGCCGTCGGCATTGAACGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTc                                 <  2:224644/135‑1 (MQ=255)                                                                                                                                  gCATTGCGGTTGTCCGCCTTGCCGTCGGCATTGAACGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCGCCGGCCGCATCCAGCAt               <  2:372549/149‑1 (MQ=255)                                                                                                                                  gCATTGCGGTTGTCCGCCTTGCCGTCGGCATTGAACGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCGCCGGCCGCATCCAGCAt               >  6:107120/1‑149 (MQ=255)                                                                                                                                    aTTGCGGTTGTCCGCCTTGCCGTCGGCATTGAACGACAGGGTAATGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCgg                                    >  3:115134/1‑126 (MQ=255)                                                                                                                                    aTTGCGGTTGTCCGCCTTGCCGTCGGCATTGAACGACAGGGTAATGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCgg                                    <  4:115134/126‑1 (MQ=255)                                                                                                                                        cGGTTGTCCGCCTTGCCGTCGGCATTGAACGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCGCCGGCCGCATcc                    <  7:321375/138‑1 (MQ=255)                                                                                                                                        cGGTTGTCCGCCTTGCCGTCGGCATTGAACGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCGCCGGCCGCATcc                    >  8:321375/1‑138 (MQ=255)                                                                                                                                               ccGCCTTGCCGTCGGCATTGAACGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCGCCGGCCGCATCCAGCATCGGCACGGCGATg  >  1:33904/1‑149 (MQ=255)                                                                                                                                                cGCCTTGCCGTCGGCATTGAACGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCGCCGGCCGCATCCAGCATCGGCACGGCGATg  <  8:231751/148‑1 (MQ=255)                                                                                                                                                   cTTGCCGTCGGCATTGAACGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTAc                                                       <  7:354126/92‑1 (MQ=255)                                                                                                                                                   cTTGCCGTCGGCATTGAACGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTAc                                                       >  8:354126/1‑92 (MQ=255)                                                                                                                                                    |                                                                                                                                                TCAATGGTGGCCTGGCTGGCCTTGGCCCCTACCCGCTCGACCAGCGAGGCGTAGGCCGAGGTGAAGCTGGTACCGGTGCCGGAATTGGTGCCCACGGTCGACTTGGTCTGCAGGTCCAGCAGCGCGTTGGCATTGCGGTTGTCCGCCTTGCCGTCGGCATTGAACGACAGGGTAAAGCTGTCATTGGCCGCAGGGCTGCCACCGATTGTGGTCTCGACGGCAAAGGTACGCGGGTTACCGCTACCATCCAGAATCGGGTCGCCGGCCGCATCCAGCATCGGCACGGCGATG  >  NC_002947/4973739‑4974029

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.