New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5256691	49 (0.830)	4 (0.070)	4/248	NT	8.0%	coding (185/342 nt)	PP_5703	type III effector protein HopJ
	?	NC_002947	= 5256717	45 (0.800)					coding (211/342 nt)	PP_5703	type III effector protein HopJ

CCAGCGGCCAACATGTATTTGCCGATACCTTGGCGTTCATTGCCGACAACTACAGCTACCAGCCGCAGGCCTTCAACAACGGCGGCGTGGAGAATGCGGCAGGGCAGAACGAAGGTTCGTGCAAAACCCTGGGCCTGGCCTTGCTTGAAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5256541‑5256691 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaaggCCAGCAGCGCTTCCTGGTCGCTCAGCCCTTCAAGCAAGGCCAGGCCCAGGGTTTTGCACGAACCTTCGTTCTGCCCTGCCGCATTCTCCACGCCGCCGTTGTTGAAGGCCTGCGGCTGGTAGCTGTAGTTGTCGGCAATGAACGCC  <  NC_002947/5256717‑5256572                                                                                                                                                                                                                                                                                                           CCAGCGGCCAACATGTATTTGCCGATACCTTGGCGTTCATTGCCGACAACTACAGCTACCAGCCGCAGGCCTTCAACAACGGCGGCGTGGAGAATGCGGCAGGGCAGAACGAAGGTTCGTGCAAAACCCTGGGCCTGGCCTTGCTTGAA                                                                                                                                                      <  8:140529/149‑1                                  CGTTCATTGCCGACAACTACAGCTACCAGCCGCAGGCCTTCAACAACGGCGGCGTGGAGAATGCGGCAGGGCAGAACGAAGGTTCGTGCAAAACCCTGGGCCTGGCCTTGCTTGAAGGCCAGCAGCGCTTCCTGGTCGCTCAGCCCTTC                                                                                                                     <  1:245137/149‑1                                   GTTCATTGCCGACAACTACAGCTACCAGCCGCAGGCCTTCAACAACGGCGGCGTGGAGAATGCGGCAGGGCAGAACGAAGGTTCGTGCAAAACCCTGGGCCTGGCCTTGCTTGAAGGCCAGCAGCGCTTCCTGGTCGCTCAGCCCTTC                                                                                                                     >  7:138660/1‑148                                    TTCATTGCCGACAACTACAGCTACCAGCCGCAGGCCTTCAACAACGGCGGCGTGGAGAATGCGGCAGGGCAGAACGAAGGTTCGTGCAAAACCCTGGGCCTGGCCTTGCTTGAAGGCCAGCAGCGCTTCCTGGTCGCTCAGCCCTTCAA                                                                                                                   <  8:138660/149‑1                                          GCCGACAACTACAGCTACCAGCCGCAGGCCTTCAACAACGGCGGCGTGGAGAATGCGGCAGGGCAGAACGAAGGTTCGTGCAAAACCCTGGGCCTGGCCTTGCTTGAAGGCCAGCAGCGCTTCCTGGTCGCTCAGCCCTTCAAGCAAG                                                                                                              <  8:22376/148‑1                                                                                                                                                     AGGCCAGCAGCGCTTCCTGGTCGCTCAGCCCTTCAAGCAAGGCCAGGCCCAGGGTTTTGCACGAACCTTCGTTCTGCCCTGCCGCATTCTCCACGCCGCCGTTGTTGAAGGCCTGCGGCTGGTAGCTGTAGTTGTCGGCAATGAACGCC  <  4:308740/149‑1                                                                                                                                                                                                                                                                                                           CCAGCGGCCAACATGTATTTGCCGATACCTTGGCGTTCATTGCCGACAACTACAGCTACCAGCCGCAGGCCTTCAACAACGGCGGCGTGGAGAATGCGGCAGGGCAGAACGAAGGTTCGTGCAAAACCCTGGGCCTGGCCTTGCTTGAAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5256541‑5256691 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaaggCCAGCAGCGCTTCCTGGTCGCTCAGCCCTTCAAGCAAGGCCAGGCCCAGGGTTTTGCACGAACCTTCGTTCTGCCCTGCCGCATTCTCCACGCCGCCGTTGTTGAAGGCCTGCGGCTGGTAGCTGTAGTTGTCGGCAATGAACGCC  <  NC_002947/5256717‑5256572

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.