New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5256691	49 (0.830)	4 (0.070)	4/248	NT	8.0%	coding (185/342 nt)	PP_5703	type III effector protein HopJ
	?	NC_002947	= 5256717	45 (0.800)					coding (211/342 nt)	PP_5703	type III effector protein HopJ

CTTGGCGTTCATTGCCGACAACTACAGCTACCAGCCGCAGGCCTTCAACAACGGCGGCGTGGAGAATGCGGCAGGGCAGAACGAAGGTTCGTGCAAAACCCTGGGCCTGGCCTTGCTTGAAGGGCTGAGC‑‑‑GACCAGGAAGC‑GCTGCTGGCCTTCGGCGAGCACTACCGTGATGTGTTGGCCACGCCTGAGGGTAGCGACCATGGCAACATCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAGTTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCT  >  NC_002947/5256569‑5256864                                                                                                                                                         |                                                                                                                                                    cTTGGCGTTCATTGCCGACAACTACAGCTACCAGCCGCAGGCCTTCAACAACGGCGGCGTGGAGAATGCGGCAGGGCAGAACGAAGGTTCGTGCAAAACCCTGGGCCTGGCCTTGCTTGAAGGGCTGAGC‑‑‑GACCAGGAAGC‑GCTGCTgg                                                                                                                                                     <  8:347028/149‑1 (MQ=255) cTTGGCGTTCATTGCCGACAACTACAGCTACCAGCCGCAGGCCTTCAACAACGGCGGCGTGGAGAATGCGGCAGGGCAGAACGAAGGTTCGTGCAAAACCCTGGGCCTGGCCTTGCTTGAAGGGCTGAGC‑‑‑GACCAGGAAGC‑GCTGCTgg                                                                                                                                                     >  5:79985/1‑149 (MQ=255)    ggCGTTCATTGCCGACAACTACAGCTACCAGCCGCAGGCCTTCAACAACGGCGGCGTGGAGAATGCGGCAGGGCAGAACGAAGGTTCGTGCAAAACCCTGGGCCTGGCCTTGCTTGAAGGGCTGAGC‑‑‑GACCAGGAAGC‑GCTGCTGGcct                                                                                                                                                  <  4:308740‑M2/149‑4 (MQ=255)          cATTGCCGACAACTACAGCTACCAGCCGCAGGCCTTCAACAACGGCGGCGTGGAGAATGCGGCAGGGCAGAACGAAGGTTCGTGCAAAACCCTGGGCCTGGCCTTGCTTGAAGGGCTGAGC‑‑‑GACCAGGAAGC‑GCTGCTGGCCTTCGGc                                                                                                                                             <  8:40419/148‑1 (MQ=255)           aTTGCCGACAACTACAGCTACCAGCCGCAGGCCTTCAACAACGGCGGCGTGGAGAATGCGGCAGGGCAGAACGAAGGTTCGTGCAAAACCCTGGGCCTGGCCTTGCTTGAAGGGCTGAGC‑‑‑GACCAGGAAGC‑GCTGCTGGCCTTCGGCGa                                                                                                                                           <  5:315868/149‑1 (MQ=255)           aTTGCCGACAACTACAGCTACCAGCCGCAGGCCTTCAACAACGGCGGCGTGGAGAATGCGGCAGGGCAGAACGAAGGTTCGTGCAAAACCCTGGGCCTGGCCTTGCTTGAAGGGCTGAGC‑‑‑GACCAGGAAGC‑GCTGCTGGCCTTCGGCGa                                                                                                                                           <  5:139677/149‑1 (MQ=255)              gCCGACAACTACAGCTACCAGCCGCAGGCCTTCAACAACGGCGGCGTGGAGAATGCGGCAGGGCAGAACGAAGGTTCGTGCAAAACCCTGGGCCTGGCCTTGCTTGAAGGGCTGAGC‑‑‑GACCAGGAAGC‑GCTGCTGGCCTTCGGCGAGCa                                                                                                                                        >  2:75651/1‑149 (MQ=255)                     aCTACAGCTACCAGCCGCAGGCCTTCAACAACGGCGGCGTGGAGAATGCGGCAGGGCAGAACGAAGGTTCGTGCAAAACCCTGGGCCTGGCCTTGCTTGAAGGGCTGAGC‑‑‑GACCAGGAAGC‑GCTGCTGGCCTTCGGCGAGCACTACCGt                                                                                                                                 <  6:79985/149‑1 (MQ=255)                      cTACAGCTACCAGCCGCAGGCCTTCAACAACGGCGGCGTGGAGAATGCGGCAGGGCAGAACGAAGGTTCGTGGAAAACCCTGGGCCTGGCCTTGCTTGAAGGGCTGAGC‑‑‑GACCAGGAAGC‑GCTGCTGGCCTTCGGCGAGCACTACCGt                                                                                                                                 >  6:269411/1‑148 (MQ=255)                      cTACAGCTACCAGCCGCAGGCCTTCAACAACGGCGGCGTGGAGAATGCGGCAGGGCAGAACGAAGGTTCGTGCAAAACCCTGGGCCTGGCCTTGCTTGAAGGGCTGAGC‑‑‑GACCAGGAAGC‑GCTGCTGGCCTTCGGCGAGCACTACCGTg                                                                                                                                <  3:83621/149‑1 (MQ=255)                         cAGCTACCAGCCGCAGGCCTTCAACAACGGCGGCGTGGAGAATGCGGCAGGGCAGAACGAAGGTTCGTGCAAAACCCTGGGCCTGGCCTTGCTTGAAGGGCTGAGC‑‑‑GACCAGGAAGC‑GCTGCTGGCCTTCGGCGAGCACTACCGTGAt                                                                                                                              <  2:166999/148‑1 (MQ=255)                         cAGCTACCAGCCGCAGGCCTTCAACAACGGCGGCGTGGAGAATGCGGCAGGGCAGAACGAAGGTTCGTGCAAAACCCTGGGCCTGGCCTTGCTTGAAGGGCTGAGC‑‑‑GACCAGGAAGC‑GCTGCTGGCCTTCGGCGAGCACTACCGTGAt                                                                                                                              <  4:225833/148‑1 (MQ=255)                                cAGCCGCAGGCCTTCAACAACGGCGGCGTGGAGAATGCGGCAGGGCAGAACGAAGGTTCGTGCAAAACCCTGGGCCTGGCCTTGCTTGAAGGGCTGAGC‑‑‑GACCAGGAAGC‑GCTGCTGGCCTTCGGCGAGCACTACCGTGATGTGTTGGc                                                                                                                      >  4:323436/1‑149 (MQ=255)                                       aGGCCTTCAACAACGGCGGCGTGGAGAATGCGGCAGGGCAGAACGAAGGTTCGTGCAAAACCCTGGGCCTGGCCTTGCTTGAAGGGCTGAGC‑‑‑GACCAGGAAGCTGCTGCTGGCCTTCGGCGAGCACTACCGTGATGTGTTGGCCACGcc                                                                                                                <  1:75651/149‑1 (MQ=255)                                       aGGCCTTCAACAACGGCGGCGTGGAGAATGCGGCAGGGCAGAACGAAGGTTCGTGCAAAACCCTGGGCCTGGCCTTGCTTGAAGGGCTGAGC‑‑‑GACCAGGAAGC‑GCTGCTGGCCTTCGGCGAGCACTACCGTGATGTGTTGGCCACGCCt                                                                                                               >  8:187221/1‑149 (MQ=255)                                         gCCTTCAACAACGGCGGCGTGGAGAATGCGGCAGGGCAGAACGAAGGTTCGTGCAAAACCCTGGGCCTGGCCTTGCTTGAAGGGCTGAGC‑‑‑GACCAGGAAGC‑GCTGCTGGCCTTCGGCGAGCACTACCGTGATGTGTTGGCCACGCCt                                                                                                               >  8:124734/1‑147 (MQ=255)                                         gCCTTCAACAACGGCGGCGTGGAGAATGCGGCAGGGCAGAACGAAGGTTCGTGCAAAACCCTGGGCCTGGCCTTGCTTGAAGGGCTGAGC‑‑‑GACCAGGAAGC‑GCTGCTGGCCTTCGGCGAGCACTACCGTGATGTGTTGGCCACGCCTGa                                                                                                             <  6:264128/149‑1 (MQ=255)                                          ccTTCAACAACGGCGGCGTGGAGAATGCGGCAGGGCAGAACGAAGGTTCGTGCAAAACCCTGGGCCTGGCCTTGCTTGAAGGGCTGAGC‑‑‑GACCAGGAAGC‑GCTGCTGGCCTTCGGCGAGCACTACCGTGATGTGTTGGCCACGCCTGAg                                                                                                            <  5:16562/149‑1 (MQ=255)                                          ccTTCAACAACGGCGGCGTGGAGAATGCGGCAGGGCAGAACGAAGGTTCGTGCAAAACCCTGGGCCTGGCCTTGCTTGAAGGGCTGAGC‑‑‑GACCAGGAAGC‑GCTGCTGGCCTTCGGCGAGCACTACCGTGATGTGTTGGCCACGCCTGAg                                                                                                            >  6:16562/1‑149 (MQ=255)                                               aacaacGGCGGCGTGGAGAATGCGGCAGGGCAGAACGAAGGTTCGTGCAAAACCCTGGGCCTGGCCTTGCTTGAAGGGCTGAGC‑‑‑GACCAGGAAGC‑GCTGCTGGCCTTCGGCGAGCACTACCGTGATGTGTTGGCCACGCCTGAg                                                                                                            >  8:6104/1‑144 (MQ=255)                                               aacaacGGCGGCGTGGAGAATGCGGCAGGGCAGAACGAAGGTTCGTGCAAAACCCTGGGCCTGGCCTTGCTTGAAGGGCTGAGC‑‑‑GACCAGGAAGC‑GCTGCTGGCCTTCGGCGAGCACTACCGTGATGTGTTGGCCACGCCTGAg                                                                                                            <  7:6104/144‑1 (MQ=255)                                                acaacGGCGGCGTGGAGAATGCGGCAGGGCAGAACGAAGGTTCGTGCAAAACCCTGGGCCTGGCCTTGCTTGAAGGGCTGAGC‑‑‑GACCAGGAAGC‑GCTGCTGGCCTTCGGCGAGCACTACCGTGATGTGTTGGCCACGCCTGAGGGTAGc                                                                                                      >  8:128002/1‑149 (MQ=255)                                                         gcgTGGAGAATGCGGCAGGGCAGAACGAAGGTTCGTGCAAAACCCTGGGCCTGGCCTTGCTTGAAGGGCTGAGC‑‑‑GACCAGGAAGC‑GCTGCTGGCCTTCGGCGAGCACTACCGTGATGTGTTGGCCACGCCTGAGGGTAGCGACCATGGc                                                                                             <  3:323436/149‑1 (MQ=255)                                                                   tGCGGCAGGGCAGAACGAAGGTTCGTGCAAAACCCTGGGCCTGGCCTTGCTTGAAGGGCTGAGCGATGAGCAGGAAGC‑GATGATGGCCTACGGCGAGCGAAACCGTGATGTGTTGGCCCCGCGTGAGGGTAGCAACCATGCCAAAATcc                                                                                      >  1:296568/1‑149 (MQ=255)                                                                     cGGCAGGGCAGAACGAAGGTTCGTGCAAAACCCTGGGCCTGGCCTTGCTTGAAGGGCTGAGC‑‑‑GACCAGGAAGC‑GCTGCTGGCCTTCGGCGAGCACTACCGTGATGTGTTGGCCACGCCTGAGGGTAGCGACCATGGCAACATCCGTGCa                                                                                 <  7:124734/149‑1 (MQ=255)                                                                     cGGCAGGGCAGAACGAAGGTTCGTGCAAAACCCTGGGCCTGGCCTTGCTTGAAGGGCTGAGC‑‑‑GACCAGGAAGC‑GCTGCTGGCCTTCGGCGAGCACTACCGTGATGTGTTGGCCACGCCTGAGGGTAGCGACCATGGCAACATCCGTGCa                                                                                 <  3:308740/149‑1 (MQ=255)                                                                      ggcagggcagAACGAAGGTTCGTGCAAAACCCTGGGCCTGGCCTTGCTTGAAGGGCTGAGC‑‑‑GACCAGGAAGC‑GCTGCTGGCCTTCGGCGAGCACTACCGTGATGTGTTGGCCACGCCTGAGGGTAGCGACCATGGCAACATCCGTGCAc                                                                                <  7:187221/149‑1 (MQ=255)                                                                       gcagggcagAACGAAGGTTCGTGCAAAACCCTGGGCCTGGCCTTGCTTGAAGGGCTGAGC‑‑‑GACCAGGAAGC‑GCTGCTGGCCTTCGGCGAGCACTACCGTGATGTGTTGGCCACGCCTGAGGGTAGCGACCATGGCAACATCCGTGCACt                                                                               <  7:336209/149‑1 (MQ=255)                                                                           ggcagAACGAAGGTTCGTGCAAAACCCTGGGCCTGGCCTTGCTTGAAGGGCTGAGC‑‑‑GACCAGGAAGC‑GCTGCTGGCCTTCGGCGAGCACTACCGTGATGTGTTGGCCACGCCTGAGGGTAGCGACCATGGCAACATCCGTGCACTGAt                                                                            >  1:271886/1‑148 (MQ=255)                                                                           ggcagAACGAAGGTTCGTGCAAAACCCTGGGCCTGGCCTTGCTTGAAGGGCTGAGC‑‑‑GACCAGGAAGC‑GCTGCTGGCCTTCGGCGAGCACTACCGTGATGTGTTGGCCACGCCTGAGGGTAGCGACCATGGCAACATCCGTGCACTGATc                                                                           <  1:302738/149‑1 (MQ=255)                                                                                               aaaaCCCTGGGCCTGGCCTTGCTTGAAGGGCTGAGC‑‑‑GACCAGGAAGC‑GCTGCTGGCCTTCGGCGAGCACTACCGTGATGTGTTGGCCACGCCTGAGGGTAGCGACCATGGCAACATCCGTGCACTGATCAAACACGGTCTGGCGGGCGt                                                       >  6:254474/1‑149 (MQ=255)                                                                                                 aaCCCTGGGCCTGGCCTTGCTTGAAGGGCTGAGC‑‑‑GACCAGGAAGC‑GCTGCTGGCCTTCGGCGAGCACTACCGTGATGTGTTGGCCACGCCTGAGGGTAGCGACCATGGCAACATCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGa                                                     <  7:128002/149‑1 (MQ=255)                                                                                                  aCCCTGGGCCTGGCCTTGCTTGAAGGGCTGAGC‑‑‑GACCAGGAAGC‑GCTGCTGGCCTTCGGCGAGCACTACCGTGATGTGTTGGCCACGCCTGAGGGTAGCGACCATGGCAACATCCGTGCACTGATCAAACACGGTCTGGCGGGCGTg                                                      >  3:296130/1‑147 (MQ=255)                                                                                                   cccTGGGCCTGGCCTTGCTTGAAGGGCTGAGC‑‑‑GACCAGGAAGC‑GCTGCTGGCCTTCGGCGAGCACTACCGTGATGTGTTGGCCACGCCTGAGGGTAGCGACCATGGCAACATCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAg                                                   <  2:271886/149‑1 (MQ=255)                                                                                                        ggccttgcctTGCTTGAAGGGCTGAGC‑‑‑GACCAGGAAGC‑GCTGCTGGCCTTCGGCGAGCACTACCGTGATGTGTTGGCCACGCCTGAGGGTAGCGACCATGGCAACATCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAGttt                                                <  1:284844/147‑1 (MQ=255)                                                                                                        ggcctggcctTGCTTGAAGGGCTGAGC‑‑‑GACCAGGAAGC‑GCTGCTGGCCTTCGGCGAGCACTACCGTGATGTGTTGGCCACGCCTGAGGGTAGCGACCATGGCAACATCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAGTTtgc                                              <  5:254474/149‑1 (MQ=255)                                                                                                          cctggcctTGCTTGAAGGGCTGAGC‑‑‑GACCAGGAAGC‑GCTGCTGGCCTTCGGCGAGCACTACCGTGATGTGTTGGCCACGCCTGAGGGTAGCGACCATGGCAACATCCGTGCa                                                                                 <  6:8412/112‑1 (MQ=255)                                                                                                               cctTGCTTGAAGGGCTGAGC‑‑‑GACCAGGAAGC‑GCTGCTGGCCTTCGGCGAGCACTACCGTGATGTGTTGGCCACGCCTGAGGGTAGCGACCATGGCAACATCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAGTTTGCTGCGCAg                                       <  4:296130/149‑1 (MQ=255)                                                                                                               cctTGCTTGAAGGGCTGAGC‑‑‑GACCAGGAAGC‑GCTGCTGGCCTTCGGCGAGCACTACCGTGATGTGTTGGCCACGCCTGAGGGTAGCGACCATGGCAACATCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAGTTTGCTGCGCAg                                       >  4:58336/1‑149 (MQ=255)                                                                                                                cttgcttgAAGGGCTGAGC‑‑‑GACCAGGAAGC‑GCTGCTGGccttcaagcaaggccaggcccagggttttgcacgaaccttcgttctgccctgccgcattctccacgccgccgttgttgaaggcctgcggctggtagctgtagttgtcggc                                       <  8:22376‑M2/148‑111 (MQ=255)                                                                                                                 ttgcttgAAGGGCTGAGC‑‑‑GACCAGGAAGC‑GCTGCTGGCCTTCGGCGAGCACTACCGTGATGTGTTGGCCACGCCTGAGGGTAGCGACCATGGCAACATCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAGTTTGCTGCGCAGcc                                     >  6:195052/1‑149 (MQ=255)                                                                                                                     ttgAAGGGCTGAGC‑‑‑GACCAGGAAGC‑GCTGCTGGccttcaagcaaggccaggcccagggttttgcacgaaccttcgttctgccctgccgcattctccacgccgccgttgttgaaggcctgcggctggtagctgtagttgtcggcaatgaa                                 <  8:138660‑M2/149‑117 (MQ=255)                                                                                                                     ttgAAGGGCTGAGC‑‑‑GACCAGGAAGC‑GCTGCTGGCCTTCGGCGAGCACTACCGTGATGTGTTGGCCACGCCTGAGGGTAGCGACCATGGCAACATCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAGTTTGCTGCGCAGCCGCtt                                 >  7:96029/1‑149 (MQ=255)                                                                                                                      tgAAGGGCTGAGC‑‑‑GACCAGGAAGC‑GCTGCTGGCCTTCGGCGAGCACTACCGTGTTGTGTTGGCCACGCCTGAGGGTAGCGACCATGGCAACATCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAGTTTGCTGCGCAGCCGCTTg                                >  1:282414/1‑149 (MQ=255)                                                                                                                       gAAGGGCTGAGC‑‑‑GACCAGGAAGC‑GCTGCTGGccttcaagcaaggccaggcccagggttttgcacgaaccttcgttctgccctgccgcattctccacgccgccgttgttgaaggcctgcggctggtagctgtagttgtcggcaatgaacg                               <  1:245137‑M2/149‑119 (MQ=255)                                                                                                                       gAAGGGCTGAGC‑‑‑GACCAGGAAGC‑GCTGCTGGccttcaagcaaggccaggcccagggttttgcacgaaccttcgttctgccctgccgcattctccacgccgccgttgttgaaggcctgcggctggtagctgtagttgtcggcaatgaac                                >  7:138660‑M2/1‑31 (MQ=255)                                                                                                                       gAAGGGCTGAGC‑‑‑GACCAGGAAGC‑GCTGCTGGCCTTCGGCGAGCACTACCGTGATGTGTTGGCCACGCCTGAGGGTAGCGACCATGGCAACATCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAGTTTGCTGCGCAGCCGCtt                                 <  3:58336/147‑1 (MQ=255)                                                                                                                       gAAGGGCTGAGC‑‑‑GACCAGGAAGC‑GCTGCTGGCCTTCGGCGAGCACTACCGTGATGTGTTGGCCACGCCTGAGGGTAGCGACCATGGCAACATCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAGTTTGCTGCGCAGCCGCtt                                 <  7:162667/147‑1 (MQ=255)                                                                                                                             cTGAGC‑‑‑GACCAGGAAGC‑GCTGCTGGCCTTCGGCGAGCACTACCGTGATGTGTTGGCCACGCCTGAGGGTAGCGACCATGGCAACATCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAGTTTGCTGCGCAGCCGCTTGCGCGCaa                         <  5:195052/149‑1 (MQ=255)                                                                                                                              tGAGC‑‑‑GACCAGGAAGC‑GCTGCTGGCCTTCGGCGAGCACTACCGTGATGTGTTGGCCACGCCTGAGGGTAGCGACCATGGCAACATCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAGTTTGCTGCGCAGCCGCTTGCGCGCAAg                        >  8:8009/1‑149 (MQ=255)                                                                                                                                  c‑‑‑GACCAGGAAGC‑GCTGCTGGCCTTCGGCGAGCTCTACCGTGATGTGTTGGCCACGCCTGAGGGTAGCGACCATGGCAACATCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAGTTTGCTGCGCAGCCGCTTGCGCGCAAGGCtt                    <  2:296568/149‑1 (MQ=255)                                                                                                                                        ccAGGAAGC‑GCTGCTGGCCTTCGGCGAGCACTACCGTGATGTGTTGGCCACGCCTGAGGGTAGCGACCATGGCAACATCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAGTTTGCTGCGCAGCCGCTTGCGCGCaa                         >  6:317332/1‑141 (MQ=255)                                                                                                                                        ccAGGAAGC‑GCTGCTGGCCTTCGGCGAGCACTACCGTGATGTGTTGGCCACGCCTGAGGGTAGCGACCATGGCAACATCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAGTTTGCTGCGCAGCCGCTTGCGCGCaa                         <  5:317332/141‑1 (MQ=255)                                                                                                                                         cAGGAAGC‑GCTGCTGGCCTTCGGCGAGCACTACCGTGATGTGTTGGCCACGCCTGAGGGTAGCGACCATGGCAACATCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAGTTTGCTGCGCAGCCGCTTGCGCGCAAGGCtt                    >  6:356909/1‑145 (MQ=255)                                                                                                                                         cAGGAAGC‑GCTGCTGGCCTTCGGCGAGCACTACCGTGATGTGTTGGCCACGCCTGAGGGTAGCGACCATGGCAACATCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAGTTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTgaga                <  5:269411/149‑1 (MQ=255)                                                                                                                                                        ggCCTTCGGCGAGCACTACCGTGATGTGTTGGCCACGCCTGAGGGTAGCGACCATGGCAACATCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAGTTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCt  >  2:124705/1‑149 (MQ=255)                                                                                                                                                         gCCTTCGGCGAGCACTACCGTGATGTGTTGGCCACGCCTGAGGGTAGCGACCATGGCAACATCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAGTTTGCTGCGCAGCCGCTTGCGCGCAAGGCtt                    >  3:45233/1‑130 (MQ=255)                                                                                                                                                         gCCTTCGGCGAGCACTACCGTGATGTGTTGGCCACGCCTGAGGGTAGCGACCATGGCAACATCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAGTTTGCTGCGCAGCCGCTTGCGCGCAAGGCtt                    <  4:45233/130‑1 (MQ=255)                                                                                                                                                         |                                                                                                                                                    CTTGGCGTTCATTGCCGACAACTACAGCTACCAGCCGCAGGCCTTCAACAACGGCGGCGTGGAGAATGCGGCAGGGCAGAACGAAGGTTCGTGCAAAACCCTGGGCCTGGCCTTGCTTGAAGGGCTGAGC‑‑‑GACCAGGAAGC‑GCTGCTGGCCTTCGGCGAGCACTACCGTGATGTGTTGGCCACGCCTGAGGGTAGCGACCATGGCAACATCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAGTTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCT  >  NC_002947/5256569‑5256864

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.