New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 537538439 (0.660)4 (0.070) 3/242 NT 9.5% coding (57/1128 nt) dnaJ chaperone protein DnaJ
?NC_002947 = 5375412 40 (0.720)coding (29/1128 nt) dnaJ chaperone protein DnaJ

TGGCCATACTGGTCGAAGGCCGCACGCTTGCTCGCGTCTGACAGCACTTCGTAGGCCTCGTTGGCCTCCTTGAACTTGTCTTCCGATTCTTTATCGCCCGGGTTGCGGTCCGGGTGGTACTTCATCGCCAAACGGCGGTAAGCCTTCTTGAGGTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5375229‑5375384
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgaggtccTGGGTGTCGAGCGCGGCGCCACTGAAGCGGACCTCAAGAAGGCTTACCGCCGTTTGGCGATGAAGTACCACCCGGACCGCAACCCGGGCGATAAAGAATCGGAAGACAAGTTCAAGGAGGCCAACGAGGCCTACGAAGTGCTGT  <  NC_002947/5375412‑5375269
                                                                                                                                                                                                                                                                                                            
TGGCCATACTGGTCGAAGGCCGCACGCTTGCTCGCGTCTGACAGCACTTCGTAGGCCTCGTTGGCCTCCTTGAACTTGTCTTCCGATTCTTTATCGCCCGGGTTGCGGTCCGGGTGGTACTTCATCGCCAAACGGCGGTAAGCCTTCTT                                                                                                                                                         <  7:253323/149‑1
   CCATACTGGTCGAAGGCCGCACGCTTGCTCGCGTCTGACAGCACTTCGTAGGCCTCGTTGGCCTCCTTGAACTTGTCTTCCGATTCTTTATCGCCCGGGTTGCGGTCCGGGTGGTACTTCATCGCCAAACGGCGGTAAGCCTTCTTGAG                                                                                                                                                      <  8:216175/149‑1
    CATACTGGTCGAAGGCCGCACGCTTGCTCGCGTCTGACAGCACTTCGTAGGCCTCGTTGGCCTCCTTGAACTTGTCTTCCGATTCTTTATCGCCCGGGTTGCGGTCCGGGTGGTACTTCATCGCCAAACGGCGGTAAGCCTTCTTGAGG                                                                                                                                                     <  7:66522/149‑1
                                                 CGTAGGCCTCGTTGGCCTCCTTGAACTTGTCTTCCGATTCTTTATCGCCCGGGTTGCGGTCCGGGTGGTACTTCATCGCCAAACGGCGGTAAGCCTTCTTGAGGTCCTGGGTGTCGAGCGCGGCGCCACTGAAGCGGACCTCAAGAA                                                                                                          <  2:139510/147‑1
                                                 CGTAGGCCTCGTTGGCCTCCTTGAACTTGTCTTCCGATTCTTTATCGCCCGGGTTGCGGTCCGGGTGGTACTTCATCGCCAAACGGCGGTAAGCCTTCTTGAGGTCCTGGGTGTCGAGCGCGGCGCCACTGAAGCGGACCTCAAGAA                                                                                                          <  3:320131/147‑1
                                                                    CTTGAACTTGTCTTCCGATTCTTTATCGCCCGGGTTGCGGTCCGGGTGGTACTTCATCGCCAAACGGCGGTAAGCCTTCTTGAGGTCCTGGGTGTCGAGCGCGGCGCCACTGAAGCGGACCTCAA                                                                                                             >  5:65161/1‑125
                                                                    CTTGAACTTGTCTTCCGATTCTTTATCGCCCGGGTTGCGGTCCGGGTGGTACTTCATCGCCAAACGGCGGTAAGCCTTCTTGAGGTCCTGGGTGTCGAGCGCGGCGCCACTGAAGCGGACCTCAA                                                                                                             <  6:65161/125‑1
                                                                                 TCCGATTCTTTATCGCCCGGGTTGCGGTCCGGGTGGTACTTCATCGCCAAACGGCGGTAAGCCTTCTT                                                                                                                                                         >  8:186657/1‑68
                                                                                 TCCGATTCTTTATCGCCCGGGTTGCGGTCCGGGTGGTACTTCATCGCCAAACGGCGGTAAGCCTGCTT                                                                                                                                                         <  7:186657/68‑1
                                                                                                                                                    TGAGGTCCTGGGTGTCGAGCGCGGCGCCACTGAAGCGGACCTCAAGAAGGCTTACCGCCGTTTGGCGATGAAGTACCACCCGGACCGCAACCCGGGCGATAAAGAAGCGGAAGACAAGTTCAAGGAGGCCAACGAG                  >  7:204855/1‑136
                                                                                                                                                     GAGGTCCTGGGTGTCGAGCGCGGCGCCACTGAAGCGGACCTCAAGAAGGCTTACCGCCGTTTGGCGATGAAGTACCACCCGGACCGCAACCCGGGCGATAAAGAATCGGAAGACAAGTTCAAGGAGGCCAACGAGGCCTACGAAGTGCT    >  2:161220/1‑149
                                                                                                                                                       GGTCCTGGGTGTCGAGCGCGGCGCCACTGAAGCGGACCTCAAGAAGGCTTACCGCCGTTTGGCGATGAAGTACCACCCGGACCGCAACCCGGGCGATAAAGAATCGGAAGACAAGTTCAAGGAGGCCAACGAGGCCTACGAAGTGCTGT  <  6:173901/149‑1
                                                                                                                                                           CTGGGTGTCGAGCGCGGCGCCACTGAAGCGGACCTCAAGAAGGCTTACCGCCGTTTGGCGATGAAGTACCACCCGGACCGCAACCCGGGCGATAAAGAATCGGAAGACAAGTTCAAG                              <  1:276328/117‑1
                                                                                                                                                           CTGGGTGTCGAGCGCGGCGCCACTGAAGCGGACCTCAAGAAGGCTTACCGCCGTTTGGCGATGAAGTACCACCCGGACCGCAACCCGGGCGATAAAGAATCGGAAGACAAGTTCAAG                              >  2:276328/1‑117
                                                                                                                                                                                                                                                                                                            
TGGCCATACTGGTCGAAGGCCGCACGCTTGCTCGCGTCTGACAGCACTTCGTAGGCCTCGTTGGCCTCCTTGAACTTGTCTTCCGATTCTTTATCGCCCGGGTTGCGGTCCGGGTGGTACTTCATCGCCAAACGGCGGTAAGCCTTCTTGAGGTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5375229‑5375384
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgaggtccTGGGTGTCGAGCGCGGCGCCACTGAAGCGGACCTCAAGAAGGCTTACCGCCGTTTGGCGATGAAGTACCACCCGGACCGCAACCCGGGCGATAAAGAATCGGAAGACAAGTTCAAGGAGGCCAACGAGGCCTACGAAGTGCTGT  <  NC_002947/5375412‑5375269

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.