New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5375384	39 (0.660)	4 (0.070)	3/242	NT	9.5%	coding (57/1128 nt)	dnaJ	chaperone protein DnaJ
	?	NC_002947	= 5375412	40 (0.720)					coding (29/1128 nt)	dnaJ	chaperone protein DnaJ

ACAGCACTTCGTAGGCCTCGTTGGCCTCCTTGAACTTGTCTTCCGATTCTTTATCGCCCGGGTTGCGGTCCGGGTGGTACTTCATCGCCAAACGGCGGTAAGCCTTCTTGAGGTCCGCTTCAGTGGCGCCGCGCTCGACACCCAGGACCTCATAATAATCACGCTTGGACATAGGTCATTTGCACCTTGTTGGGCGTGTGGCATCTGCGCCACGCCATCAGCACCCGCCCGCTACCCATTAAGAGCCACTGACAGATGCTGTAAAAATTCTCGAATTCCAGATACGCCAACG  >  NC_002947/5375269‑5375560                                                                                                                                                |                                                                                                                                                     aCAGCACTTCGTAGGCCTCGTTGGCCTCCTTGAACTTGTCTTCCGATTCTTTATCGCCCGGGTTGCGGTCCGGGTGGTACTTCATCGCCAAACGGCGGTAAGCCTTCTTGAGGTCCGCTTCAGTGGCGCCGCGCTCGACACCCAggacc                                                                                                                                                 <  6:173901‑M2/149‑6 (MQ=255)   aGCACTTCGTAGGCCTCGTTGGCCTCCTTGAACTTGTCTTCCGATTCTTTATCGCCCGGGTTGCGGTCCGGGTGGTACTTCATCGCCAAACGGCGGTAAGCCTTCTTGAGGTCCGCTTCAGTGGCGCCGCGCTCGACACCCAggacctc                                                                                                                                               >  2:161220‑M2/1‑142 (MQ=255)     cACTTCGTAGGCCTCGTTTGCCTCCTTGAACTTGGCTTCCGATTCTTTATCGCCCGGGTTGCGGTCCGGGTGGTACTTCATCGCCAAACGGCGGTAAGCCTTCTTGAGGTCCGCTTCAGTGGCGCCGCGCTCGACACCCAGGACCTCat                                                                                                                                             <  6:37361/149‑1 (MQ=255)            tAGGCCTCGTTGGCCTCCTTGAACTTGTCTTCCGATTCTTTATCGCCCGGGTTGCGGTCCGGGTGGTACTTCATCGCCAAACGGCGGTAAGCCTTCTTGAGGTCCGCTTCAGTGGCGCCGCGCTCGACACCCAGGACCTCATAATAATc                                                                                                                                      <  5:323875/149‑1 (MQ=255)                 cTCGTTGGCCTCCTTGAACTTGTCTTCCGCTTCTTTATCGCCCGGGTTGCGGTCCGGGTGGTACTTCATCGCCAAACGGCGGTAAGCCTTCTTGAGGTCCGCTTCAGTGGCGCCGCGCTCGACACCCAggacctca                                                                                                                                              >  7:204855‑M2/1‑128 (MQ=255)                          ctcctTGAACTTGTCTTCCGATTCTTTATCGCCCGGGTTGCGGTCCGGGTGGTACTTCATCGCCAAACGGCGGTAAGCCTTCTTGAGGTCCGCTTCAGTGGCGCCGCGCTCGACACCCAGGACCTCATAATAATCa                                                                                                                                     >  6:290549/1‑136 (MQ=255)                          ctcctTGAACTTGTCTTCCCATTCTTTATCGCCCGGGTTGCGGTCCGGGTGGTACTTCATCGCCAAACGGCGGTAAGCCTTCTTGAGGTCCGCTTCAGTGGCGCCGCGCTCGACACCCAGGACCTCATAATAATCa                                                                                                                                     <  5:290549/136‑1 (MQ=255)                             ctTGAACTTGTCTTCCGATTCTTTATCGCCCGGGTTGCGGTCCGGGTGGTACTTCATCGCCAAACGGCGGTAAGCCTTCTTGAGGTCCGCTTCAGTGGCGCCGCGCTCGACACCCAg                                                                                                                                                     <  1:276328‑M2/117‑2 (MQ=255)                             ctTGAACTTGTCTTCCGATTCTTTATCGCCCGGGTTGCGGTCCGGGTGGTACTTCATCGCCAAACGGCGGTAAGCCTTCTTGAGGTCCGCTTCAGTGGCGCCGCGCTCGACACCCAg                                                                                                                                                     >  2:276328‑M2/1‑116 (MQ=255)                             ctTGAACTTGTCTTCCGATTCTTTATCGCCCGGGTTGCGGTCCGGGTGGTACTTCATCGCCAAACGGCGGTAAGCCTTCTTGAGGTCCGCTTCAGTGGCGCCGCGCTCGACACCCAGGACCTCATAATAATCACGCTTGGACATAGGt                                                                                                                      >  2:255468/1‑148 (MQ=255)                                      gTCTTCCGATTCTTTATCGCCCGGGTTGCGGTCCGGGTGGTACTTCATCGCCAAACGGCGGTAAGCCTTCTTGAGGTCCGCTTCAGTGGCGCCGCGCTCGACACCCAGGACCTCATAATAATCACGCTTGGACATAGGTCATTTGCAcc                                                                                                            >  5:42652/1‑149 (MQ=255)                                        cTTCCGATTCTTTATCGCCCGGGTTGCGGTCCGGGTGGTACTTCATCGCCAAACGGCGGTAAGCCTTCTTGAGGTCCGCTTCAGTGGCGCCGCGCTCGACACCCAGGACCTCATAATAATCACGCTTGGACATAGGTCATTTGCACCtt                                                                                                          >  6:181680/1‑149 (MQ=255)                                           ccGATTCTTTATCGCCCGGGTTGCGGTCCGGGTGGTACTTCATCGCCAAACGGCGGTAAGCCTTCTTGAGGTCCGCTTCAGTGGCGCCGCGCTCGACACCCAGGACCTCATAATAATCACGCTTGGACATAGGTCATTTGCACCttg                                                                                                         <  2:54804/147‑1 (MQ=255)                                            cGATTCTTTATCGCCCGGGTTGCGGTCCGGGTGGTACTTCATCGCCAAACGGCGGTAAGCCTTCTTGAGGTCCGCTTCAGTGGCGCCGCGCTCGACACCCAGGACCTCATAATAATCACGCTTGGACATAGGTCATTTGCACCttgttg                                                                                                      <  7:118911/149‑1 (MQ=255)                                             gATTCTTTATCGCCCGGGTTGCGGTCCGGGTGGTACTTCATCGCCAAACGGCGGTAAGCCTTCTTGAGGTCCGCTTCAGTGGCGCCGCGCTCGACACCCAGGACCTCATAATAATCACGCTTGGACATAGGTCATTTGCACCTTGTTgg                                                                                                     <  6:42652/149‑1 (MQ=255)                                              aTTCTTTATCGCCCGGGTTGCGGTCCGGGTGGTACTTCATCGCCAAACGGCGGTAAGCCTTCTTGAGGACCGCTTCAGTGGCGCCGCGCTCGACACCCAGGACCTCATAATAATCACGATTGGACATAGGTCATTTGCACCTTGTTggg                                                                                                    >  5:315383/1‑149 (MQ=255)                                                tCTTTATCGCCCGGGTTGCGGTCCGGGTGGTACTTCATCGCCAAACGGCGGTAAGCCTTCTTGAGGTCCGCCTCCGTGGCGCCGCGCTCGACACCCAGGACCTCATAATAATCACGCTTGGACATAGGTCATTTGCACCTTGTTGGGc                                                                                                   <  4:238280/148‑1 (MQ=255)                                                  tttATCGCCCGGGTTGCGGTCCGGGTGGTACTTCATCGCCAAACGGCGGTAAGCCTTCTTGAGGTCCGCTTCAGTGGCGCCGCGCTCGACACCCAGGACCTCATAATAATCACGCTTGGACATAGGTCATTTGCa                                                                                                              <  4:144107/135‑1 (MQ=255)                                                  tttATCGCCCGGGTTGCGGTCCGGGTGGTACTTCATCGCCAAACGGCGGTAAGCCTTCTTGAGGTCCGCTTCAGTGGCGCCGCGCTCGACACCCAGGACCTCATAATAATCACGCTTGGACATAGGTCATTTGCa                                                                                                              >  3:144107/1‑135 (MQ=255)                                                     aTCGCCCGGGTTGCGGTCCGGGTGGTACTTCATCGCCAAACGGCGGTAAGCCTTCTTGAGGTCCGCTTCAGTGGCGCCGCGCTCGACACCCAGGACCTCATaataat                                                                                                                                       >  8:123329/1‑107 (MQ=255)                                                     aTCGCCCGGGTTGCGGTCCGGGTGGTACTTCATCGCCAAACGGCGGTAAGCCTTCTTGAGGTCCGCTTCAGTGGCGCCGCGCTCGACACCCAGGACCTCATaataat                                                                                                                                       <  7:123329/107‑1 (MQ=255)                                                     aTCGCCCGGGTTGCGGTCCGGGTGGTACTTCATCGCCAAACGGCGGTAAGCCTTCTTGAGGTCCGCTTCAGTGGCGCCGCGCTCGACACCCAGGACCTCATAATAATCACGCTTGGACATAGGTCATTTGCACCTTGTTGGGCGtgtg                                                                                              <  5:173901/148‑1 (MQ=255)                                                        gCCCGGGTTGCGGTCCGGGTGGTACTTCATCGCCAAACGGCGGTAAGCCTTCTTGAGGTCCGCTTCAGTGGCGCCGCGCTCGACACCCAGGACCTCATAATAATc                                                                                                                                      <  2:345517/105‑1 (MQ=255)                                                        gCCCGGGTTGCGGTCCGGGTGGTACTTCATCGCCAAACGGCGGTAAGCCTTCTTGAGGTCCGCTTCAGTGGCGCCGCGCTCGACACCCAGGACCTCATAATAATc                                                                                                                                      >  1:345517/1‑105 (MQ=255)                                                                   ggTCCGGGTGGTACTTCATCGCCAAACGGCGGTAAGCCTTCTTGAGGTCCGCTTCAGTGGCGCCGCGCTCGACACCCAGGACCTCATAATAATCACGCTTGGACATAGGTCATTTGCACCTTGTTGGGCGTGTgg                                                                                             <  7:86193/135‑1 (MQ=255)                                                                   ggTCCGGGTGGTACTTCATCGCCAAACGGCGGTAAGCCTTCTTGAGGTCCGCTTCAGTGGCGCCGAGCTCGACACCCAGGACCTCATAATAATCACGCTTGGACATAGGTCATTTGCACCTTGTTGGGCGTGTgg                                                                                             >  8:86193/1‑135 (MQ=255)                                                                       cGGGTGGTACTTCATCGCCAAACGGCGGTAAGCCTTCTTGAGGTCCGCTTCAGTGGCGCCGCGCTCGACACCCAGGACCTCATAATAATCACGCTTGGACATAGGTCATTTGCACCTTGTTGGGCGTGTGGCATCTGCGCCACGCCAt                                                                            <  8:96873/148‑1 (MQ=255)                                                                        gggTGGTACTTCATCGCCAAACGGCGGTAAGCCTTCTTGAGGTCCGCTTCAGTGGCGCCGCGCTCGACACCCAGGACCTCATAATAATCACGCTTGGACATAGGTCATTTGCACCTTGTTGGGCGTGTGGCATCTGCGCCACGCCATCa                                                                          <  5:181680/149‑1 (MQ=255)                                                                          gtggtACTTCATCGCCAAACGGCGGTAAGCCTTCTTGAGGTCCGCTTCAGTGGCGCCGCGCTCGACACCCAGGACCTCATAATAATCACGCTTGGACATAGGTCATTTGCAcc                                                                                                            <  7:62798/113‑1 (MQ=255)                                                                          gtggtACTTCATCGCCAAACGGCGGTAAGCCTTCTTGAGGTCCGCTTCAGTGGCGCCGCGCTCGACACCCAGGACCTCATAATAATCACGCTTGGACATAGGTCATTTGCAcc                                                                                                            >  8:62798/1‑113 (MQ=255)                                                                                   cATCGCCAAACGGCGGTAAGCCTTCTTGAGGTCCGCTTCAGTGGCGCCGCGCTCGACACCCAGGACCTCATAATAATCACGCTTGGACATAGGTCATTCGCACCTTGTTGGGCGTGTGGCATCTGCGCCACGCCATCAGCAc                                                                      <  3:206756/142‑1 (MQ=255)                                                                                   cATCGCCAAACGGCGGTAAGCCTTCTTGAGGTCCGCTTCAGTGGCGCCGCGCTCGACACCCAGGACCTCATAATAATCACGCTTGGACATAGGTCATTAGCACCTTGTTGGGCGTGTGGCATCTGCGCCACGCCATCAGCAc                                                                      >  4:206756/1‑142 (MQ=255)                                                                                    aTCGCCAAACGGCGGTAAGCCTTCTTGAGGTCCGCTTCAGTGGCGCCGCGCTCGACACCCAGGACCTCATAATAATCACGCTTGGACATAGGTCATTTGCACCTTGTTGGGCGTGTGGCATCTGCGCCACGCCATCAGCACccgcccgc                                                              >  5:4661/1‑149 (MQ=255)                                                                                           aaCGGCGGTAAGCCTTCTTGAGGTCCGCTTCAGTGGCGCCGCGCTCGACACCCAGGACCTCATAATAATCACGCTTGGACATAGGTCATTTGCACCTTGTTGGGCGTGTGGCATCTGCGCCACGCCATCAGCACCCGCCCGCTACCCAt                                                       >  4:88748/1‑149 (MQ=255)                                                                                            aCGGCGGTAAGCCTTCTTGAGGTCCGCTTCAGTGGCGCCGCGCTCGACACCCAGGACCTCATAATAATCACGCTTGGACATa                                                                                                                         >  4:250454/1‑82 (MQ=255)                                                                                                        cttcttGAGGTCCGCTTCAGTGGCGCCGCGCTCGACACCCAGGACCTCATAATAATCACGCTTGGACATAGGTCATTTGCACCTTGTTGGGCGTGTGGCATCTGCGCCACGCCATCAGCACCCGCCCGCTACCCATTAAGAGCCACTGa                                          >  6:14159/1‑149 (MQ=255)                                                                                                         ttcttGAGGTCCGCTTCAGTGGCGCCGCGCTCGACACCCAggacctcaagaaggcttaccgccgtttggcgatgaagtaccacccggaccgcaacccgggcgataaagaatcggaagacaagttcaaggaggccaacgaggcctacg                                           <  3:320131‑M2/147‑108 (MQ=255)                                                                                                         ttcttGAGGTCCGCTTCAGTGGCGCCGCGCTCGACACCCAggacctcaagaaggcttaccgccgtttggcgatgaagtaccacccggaccgcaacccgggcgataaagaatcggaagacaagttcaaggaggccaacgaggcctacg                                           <  2:139510‑M2/147‑108 (MQ=255)                                                                                                            ttGAGGTCCGCTTCAGTGGCGCCGCGCTCGACACCCAggacctcaagaaggcttaccgccgtttggcgatgaagtaccacccggaccgcaacccgggcgataaagaatcggaagacaagttcaag                                                              >  5:65161‑M2/1‑37 (MQ=255)                                                                                                            ttGAGGTCCGCTTCAGTGGCGCCGCGCTCGACACCCAggacctcaagaaggcttaccgccgtttggcgatgaagtaccacccggaccgcaacccgggcgataaagaatcggaagacaagttcaag                                                              <  6:65161‑M2/125‑89 (MQ=255)                                                                                                              gAGGTCCGCTTCAGTGGCGCCGCGCTCGACACCCAGGACCTCATAATAATCACGCTTGGACATAGGTCATTTGCACCTTGTTGGGCGTGTGGCATCTGCGCCACGCCATCAGCACCCGCCCGCTACCCATTAAGAGCCACTGACAGa                                      <  3:100686/147‑1 (MQ=255)                                                                                                                     gCTTCAGTGGCGCCGCGCTCGACACCCAGGACCTCATAATAATCACGCTTGGACATAGGTCATTTGCACCTTGTTGGGCGTGTGGCATCTGCGCCACGCCATCAGCACCCGCCCGCTACCCATTAAGAGCCACTGACAGATGCTGTaa                              >  6:271434/1‑148 (MQ=255)                                                                                                                          aGTGGCGCCGCGCTCGACACCCAGGACCTCATAATAATCACGCTTGGACATAGGTCATTTGCACCTTGTTGGGCGTGTGGCATCTGCGCCACGCCATCAGCACCCGCCCGCTACCCATTAAGAGCCACTGACAGATGCTGTAAAAAtt                         <  6:4661/148‑1 (MQ=255)                                                                                                                            tGGCGCCGCGCTCGACACCCAGGACCTCATAATAATCACGCTTGGACATAGGTCATTTGCACCTTGTTGGGCGTGTGGCATCTGCGCCACGCCATCAGCACCCGCCCGCTACCCTTTAAGAGCCAGTGACAGATGCTGTAAAAATtctc                      <  6:315383/149‑1 (MQ=255)                                                                                                                            tGGCGCCGCGCTCGACACCCAGGACCTCATAATAATCACGCTTGGACATAGGTCATTTGCACCTTGTTGGGCGTGTGGCATCTGCGCCACGCCATCAGCACCCGCCCGCTACCCATTAAGAGCCACTGACAGATGCTGTAAAAATtctc                      <  1:255468/149‑1 (MQ=255)                                                                                                                                gccgcGCTCGACACCCAGGACCTCATAATAATCACGCTTGGACATAGGTCATTTGCACCTTGTTGGGCGTGTGGCATCTGCGCCACGCCATCAGCACCCGCCCGCTACCCATTAAGAGCCACTGACAGATGCTGTAAAAATTCTCGAAt                  >  3:344627/1‑149 (MQ=255)                                                                                                                                    cgcTCGACACCCAGGACCTCATAATAATCACGCTTGGACATAGGTCATTTGCACCTTGTTGGGCGTGTGGCATCTGCGCCACGCCATCAGCACCCGCCCGCTACCCATTAAGAGCCACTGACAGATGCTGTAAAAATTCTCGAATTCCa              <  4:344627/149‑1 (MQ=255)                                                                                                                                       tCGACACCCAGGACCTCATAATAATCACGCTTGGACATAGGTCATTTGCACCTTGTTGGGCGTGTGGCATCTGCGCCACGCCATCAGCACCCGCCCGCTACCCATTAAGAGCCACTGACAGATGCTGTAAAAATTCTCGAATTCCAGa            >  2:9479/1‑148 (MQ=255)                                                                                                                                         gACACCCAGGACCTCATAATAATCACGCTTGGACATAGGTCATTTGCACCTTGTTGGGCGTGTGGCATCTGCGCCACGCCATCAGCACCCGCCCGCTACCCATTAAGAGCCACTGACAGATGCTGTAAAAATTCTCGAATTCCAGATAc         <  5:14159/149‑1 (MQ=255)                                                                                                                                           cacCCAGGAACTCATAATAATCACGCTTGTACATAGGTCATTTGCACCTTGTTGGGCGTGTGGCATCTGCGCCAAGCCATCAGCACCCGCCCGCTACCAATTAAGACACACTGACAGAATCTGTAAAAATAATCGAATACCACATAccc       >  8:183733/1‑147 (MQ=255)                                                                                                                                              ccAGGACCTCATAATAATCACGCTTGGACATAGGTCATTTGCACCTTGTTGGGCGTGTGGCATCTGCGCCACGCCATCAGCACCCGCCCGCTACCCATTAAGAGc                                                <  4:328948/105‑1 (MQ=255)                                                                                                                                              ccAGGACCTCATAATAATCACGCTTGGACATAGGTCATTTGCACCTTGTTGGGCGTGTGGCATCTGCGCCACGCCATCAGCACCCGCCCGCTACCCATTAAGAGc                                                >  3:328948/1‑105 (MQ=255)                                                                                                                                              ccAGGACCTCATAATAATCACGCTTGGACATAGGTCATTTGCACCTTGTTGGGCGTGTGGCATCTGCGCCACGCCATCAGCACCCGCCCGCTACCCATTAAGAGCCACTGACAGATGCTGTAAAAATtctc                      <  6:39847/131‑1 (MQ=255)                                                                                                                                              ccAGGACCTCATAATAATCACGCTTGGACATAGGTCATTTGCACCTTGTTGGGCGTGTGGCATCTGCGCCACGCCATCAGCACCCGCCCGCTACCCATTAAGAGCCACTGACAGATGCTGTAAAAATtctc                      >  5:39847/1‑131 (MQ=255)                                                                                                                                                aGGACCTCATAATAATCACGCTTGGACATAGGTCATTTGCACCTTGTTGGGCGTGTGGCATCTGCGCCACGCCATCAGCACCCGCCCGCTACCCATTAAGAGCCACTGACAGATGCTGTAAAAATTCTCGAATTCCAGATACGCCAAcg  >  2:188551/1‑149 (MQ=255)                                                                                                                                                |                                                                                                                                                     ACAGCACTTCGTAGGCCTCGTTGGCCTCCTTGAACTTGTCTTCCGATTCTTTATCGCCCGGGTTGCGGTCCGGGTGGTACTTCATCGCCAAACGGCGGTAAGCCTTCTTGAGGTCCGCTTCAGTGGCGCCGCGCTCGACACCCAGGACCTCATAATAATCACGCTTGGACATAGGTCATTTGCACCTTGTTGGGCGTGTGGCATCTGCGCCACGCCATCAGCACCCGCCCGCTACCCATTAAGAGCCACTGACAGATGCTGTAAAAATTCTCGAATTCCAGATACGCCAACG  >  NC_002947/5375269‑5375560

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.