New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5375384	39 (0.660)	4 (0.070)	3/242	NT	9.5%	coding (57/1128 nt)	dnaJ	chaperone protein DnaJ
	?	NC_002947	= 5375412	40 (0.720)					coding (29/1128 nt)	dnaJ	chaperone protein DnaJ

GGTCGAAGGCCGCACGCTTGCTCGCGTCTGACAGCACTTCGTAGGCCTCGTTGGCCTCCTTGAACTTGTCTTCCGATTCTTTATCGCCCGGGTTGCGGTCCGGGTGGTACTTCATCGCCAAACGGCGGTAAGCCTTCTTGAGGTCCGCTTCAGTGGCGCCGCGCTCGACACCCAGGACCTCATAATAATCACGCTTGGACATAGGTCATTTGCACCTTGTTGGGCGTGTGGCATCTGCGCCACGCCATCAGCACCCGCCCGCTACCCATTAAGAGCCACTGACAGATGCT  >  NC_002947/5375239‑5375528                                                                                                                                                  |                                                                                                                                                 ggTCGAAGGCCGCACGCTTGCTCGCGTCTGACAGCACTTCGTAGGCCTCGTTGGCCTCCTTGAACTTGTCTTCCGATTCTTTATCGCCCGGGTTGCGGTCCGGGTGGTACTTCATCGCCAAACGGCGGTAAGCCTTCTTGAGGTCCGCt                                                                                                                                               >  4:100686/1‑149 (MQ=255)  gTCGAAGGCCGCACGCTTGCTCGCGTCTGACAGCACTTCGTAGGCCTCGTTGGCCTCCTTGAACTTGTCTTCCGATTCTTTATCGCCCGGGTTGCGGTCCGGGTGGTACTTCATCGCCAAACGGCGGTAAGCCTTCTTGGGGTCCGCtt                                                                                                                                              <  4:207163/149‑1 (MQ=255)   tCGAAGGCCGCACGCTTGCTCGCGTCTGACAGCACTTCGTAGGCCTCGTTGGCCTCCTTGAACTTGTCTTCCGATTCTTTATCGCCCGGGTTGCGGTCCGGGTGGTACTTCATCGCCAAACGGCGGTAAGCCTTCTTGAGGTCCGCTTc                                                                                                                                             <  7:77225/149‑1 (MQ=255)     gAAGGCCGCACGCTTGCTCGCGTCTGACAGCACTTCGTAGGCCTCGTTGGCCTCCTTGAACTTGTCTTCCGATTCTTTATCGCCCGGGTTGCGGTCCGGGTGGTACTTCATCGCCAAACGGCGGTAAGCCTTCTTGAGGTCCGCTTCAg                                                                                                                                           >  7:96873/1‑149 (MQ=255)     gAAGGCCGCACGCTTGCTCGCGTCTGACAGCACTTCGTAGGCCTCGTTGGCCTCCTTGAACTTGTCTTCCGATTCGTTATCGCCCGGGTTGCGGTCCGGGTGGTACTTCATCGCCAAACGGCGGTAAGCCTTCTTGAGGTCCGCGTCAg                                                                                                                                           >  3:238280/1‑149 (MQ=255)            gCACGCTTGCTCGCGTCTGACAGCACTTCGTAGGCCTCGTTGGCCTCCTTGAACTTGTCTTCCGATTCTTTATCGCCCGGGTTGCGGTCCGGGTGGTACTTCATCGCCAAACGGCGGTAAGCCTTCTTGAGGTCCGCTTCAGTGGcgcc                                                                                                                                    >  1:54804/1‑149 (MQ=255)            gCACGCTTGCTCGCGTCTGACAGCACTTCGTAGGCCTCGTTGGCCTCCTTGAACTTGTCTTCCGATTCTTTATCGCCCGGGTTGCGGTCCGGGTGGTACTTCATCGCCAAACGGCGGTAAGCCTTCTTGAGGTCCGCTTCAGTGGcgcc                                                                                                                                    >  8:118911/1‑149 (MQ=255)                  ttGCTCGCGTCTGACAGCACTTCGTAGGCCTCGTTGGCCTCCTTGAACTTGTCTTCCGATTCTTTATCGCCCGGGTTGCGGTCCGGGTGGTACTTCATCGCCAAACGGCGGTAAGCCTTCTTGAGGTCCGCTTCAGTGGCGCCGCGCTc                                                                                                                              >  7:195948/1‑149 (MQ=255)                      tCGCGTCTGACAGCACTTCGTAGGCCTCGTTGGCCTCCTTGAACTTGTCTTCCGATTCTTTATCGCCCGGGTTGCGGTCCGGGTGGTACTTCATCGCCAAACGGCGGTAAGCCTTCTTGAGGTCCGCTTCAGTGgcgc                                                                                                                                     <  1:201967/138‑1 (MQ=255)                      tCGCGTCTGACAGCACTTCGTAGGCCTCGTTGGCCTCCTTGAACTTGTCTTCCGATTCTTTATCGCCCGGGTTGCGGTCCGGGTGGTACTTCATCGCCAAACGGCGGTAAGCCTTCTTGAGGTCCGCTTCAGTGgcgc                                                                                                                                     >  2:201967/1‑138 (MQ=255)                               aCAGCACTTCGTAGGCCTCGTTGGCCTCCTTGAACTTGTCTTCCGATTCTTTATCGCCCGGGTTGCGGTCCGGGTGGTACTTCATCGCCAAACGGCGGTAAGCCTTCTTGAGGTCCGCTTCAGTGGCGCCGCGCTCGACACCCAggacc                                                                                                                 <  6:173901‑M2/149‑6 (MQ=255)                                 aGCACTTCGTAGGCCTCGTTGGCCTCCTTGAACTTGTCTTCCGATTCTTTATCGCCCGGGTTGCGGTCCGGGTGGTACTTCATCGCCAAACGGCGGTAAGCCTTCTTGAGGTCCGCTTCAGTGGCGCCGCGCTCGACACCCAggacctc                                                                                                               >  2:161220‑M2/1‑142 (MQ=255)                                   cACTTCGTAGGCCTCGTTTGCCTCCTTGAACTTGGCTTCCGATTCTTTATCGCCCGGGTTGCGGTCCGGGTGGTACTTCATCGCCAAACGGCGGTAAGCCTTCTTGAGGTCCGCTTCAGTGGCGCCGCGCTCGACACCCAGGACCTCat                                                                                                             <  6:37361/149‑1 (MQ=255)                                        cGTAGGCCTCGTTGGCCTCCTTGAACTTGTCTTCCGATTCTTTATCGCCCGGGTTGCGGTCCGGGTGGTACTTCATCGCCAAACGGCGGTAAGCCTTCTTGAGGTCCtgggtgtcgagcgcggcgccactgaagcggacctcaagaa                                                                                                          <  2:139510‑M1/147‑41 (MQ=255)                                        cGTAGGCCTCGTTGGCCTCCTTGAACTTGTCTTCCGATTCTTTATCGCCCGGGTTGCGGTCCGGGTGGTACTTCATCGCCAAACGGCGGTAAGCCTTCTTGAGGTCCtgggtgtcgagcgcggcgccactgaagcggacctcaagaa                                                                                                          <  3:320131‑M1/147‑41 (MQ=255)                                          tAGGCCTCGTTGGCCTCCTTGAACTTGTCTTCCGATTCTTTATCGCCCGGGTTGCGGTCCGGGTGGTACTTCATCGCCAAACGGCGGTAAGCCTTCTTGAGGTCCGCTTCAGTGGCGCCGCGCTCGACACCCAGGACCTCATAATAATc                                                                                                      <  5:323875/149‑1 (MQ=255)                                               cTCGTTGGCCTCCTTGAACTTGTCTTCCGCTTCTTTATCGCCCGGGTTGCGGTCCGGGTGGTACTTCATCGCCAAACGGCGGTAAGCCTTCTTGAGGTCCGCTTCAGTGGCGCCGCGCTCGACACCCAggacctca                                                                                                              >  7:204855‑M2/1‑128 (MQ=255)                                                        ctcctTGAACTTGTCTTCCGATTCTTTATCGCCCGGGTTGCGGTCCGGGTGGTACTTCATCGCCAAACGGCGGTAAGCCTTCTTGAGGTCCGCTTCAGTGGCGCCGCGCTCGACACCCAGGACCTCATAATAATCa                                                                                                     >  6:290549/1‑136 (MQ=255)                                                        ctcctTGAACTTGTCTTCCCATTCTTTATCGCCCGGGTTGCGGTCCGGGTGGTACTTCATCGCCAAACGGCGGTAAGCCTTCTTGAGGTCCGCTTCAGTGGCGCCGCGCTCGACACCCAGGACCTCATAATAATCa                                                                                                     <  5:290549/136‑1 (MQ=255)                                                           ctTGAACTTGTCTTCCGATTCTTTATCGCCCGGGTTGCGGTCCGGGTGGTACTTCATCGCCAAACGGCGGTAAGCCTTCTTGAGGTCCtgggtgtcgagcgcggcgccactgaagcggacctcaa                                                                                                             >  5:65161‑M1/1‑88 (MQ=255)                                                           ctTGAACTTGTCTTCCGATTCTTTATCGCCCGGGTTGCGGTCCGGGTGGTACTTCATCGCCAAACGGCGGTAAGCCTTCTTGAGGTCCtgggtgtcgagcgcggcgccactgaagcggacctcaa                                                                                                             <  6:65161‑M1/125‑38 (MQ=255)                                                           ctTGAACTTGTCTTCCGATTCTTTATCGCCCGGGTTGCGGTCCGGGTGGTACTTCATCGCCAAACGGCGGTAAGCCTTCTTGAGGTCCGCTTCAGTGGCGCCGCGCTCGACACCCAg                                                                                                                     >  2:276328‑M2/1‑116 (MQ=255)                                                           ctTGAACTTGTCTTCCGATTCTTTATCGCCCGGGTTGCGGTCCGGGTGGTACTTCATCGCCAAACGGCGGTAAGCCTTCTTGAGGTCCGCTTCAGTGGCGCCGCGCTCGACACCCAg                                                                                                                     <  1:276328‑M2/117‑2 (MQ=255)                                                           ctTGAACTTGTCTTCCGATTCTTTATCGCCCGGGTTGCGGTCCGGGTGGTACTTCATCGCCAAACGGCGGTAAGCCTTCTTGAGGTCCGCTTCAGTGGCGCCGCGCTCGACACCCAGGACCTCATAATAATCACGCTTGGACATAGGt                                                                                      >  2:255468/1‑148 (MQ=255)                                                                    gTCTTCCGATTCTTTATCGCCCGGGTTGCGGTCCGGGTGGTACTTCATCGCCAAACGGCGGTAAGCCTTCTTGAGGTCCGCTTCAGTGGCGCCGCGCTCGACACCCAGGACCTCATAATAATCACGCTTGGACATAGGTCATTTGCAcc                                                                            >  5:42652/1‑149 (MQ=255)                                                                      cTTCCGATTCTTTATCGCCCGGGTTGCGGTCCGGGTGGTACTTCATCGCCAAACGGCGGTAAGCCTTCTTGAGGTCCGCTTCAGTGGCGCCGCGCTCGACACCCAGGACCTCATAATAATCACGCTTGGACATAGGTCATTTGCACCtt                                                                          >  6:181680/1‑149 (MQ=255)                                                                         ccGATTCTTTATCGCCCGGGTTGCGGTCCGGGTGGTACTTCATCGCCAAACGGCGGTAAGCCTTCTTGAGGTCCGCTTCAGTGGCGCCGCGCTCGACACCCAGGACCTCATAATAATCACGCTTGGACATAGGTCATTTGCACCttg                                                                         <  2:54804/147‑1 (MQ=255)                                                                          cGATTCTTTATCGCCCGGGTTGCGGTCCGGGTGGTACTTCATCGCCAAACGGCGGTAAGCCTTCTTGAGGTCCGCTTCAGTGGCGCCGCGCTCGACACCCAGGACCTCATAATAATCACGCTTGGACATAGGTCATTTGCACCttgttg                                                                      <  7:118911/149‑1 (MQ=255)                                                                           gATTCTTTATCGCCCGGGTTGCGGTCCGGGTGGTACTTCATCGCCAAACGGCGGTAAGCCTTCTTGAGGTCCGCTTCAGTGGCGCCGCGCTCGACACCCAGGACCTCATAATAATCACGCTTGGACATAGGTCATTTGCACCTTGTTgg                                                                     <  6:42652/149‑1 (MQ=255)                                                                            aTTCTTTATCGCCCGGGTTGCGGTCCGGGTGGTACTTCATCGCCAAACGGCGGTAAGCCTTCTTGAGGACCGCTTCAGTGGCGCCGCGCTCGACACCCAGGACCTCATAATAATCACGATTGGACATAGGTCATTTGCACCTTGTTggg                                                                    >  5:315383/1‑149 (MQ=255)                                                                              tCTTTATCGCCCGGGTTGCGGTCCGGGTGGTACTTCATCGCCAAACGGCGGTAAGCCTTCTTGAGGTCCGCCTCCGTGGCGCCGCGCTCGACACCCAGGACCTCATAATAATCACGCTTGGACATAGGTCATTTGCACCTTGTTGGGc                                                                   <  4:238280/148‑1 (MQ=255)                                                                                tttATCGCCCGGGTTGCGGTCCGGGTGGTACTTCATCGCCAAACGGCGGTAAGCCTTCTTGAGGTCCGCTTCAGTGGCGCCGCGCTCGACACCCAGGACCTCATAATAATCACGCTTGGACATAGGTCATTTGCa                                                                              <  4:144107/135‑1 (MQ=255)                                                                                tttATCGCCCGGGTTGCGGTCCGGGTGGTACTTCATCGCCAAACGGCGGTAAGCCTTCTTGAGGTCCGCTTCAGTGGCGCCGCGCTCGACACCCAGGACCTCATAATAATCACGCTTGGACATAGGTCATTTGCa                                                                              >  3:144107/1‑135 (MQ=255)                                                                                   aTCGCCCGGGTTGCGGTCCGGGTGGTACTTCATCGCCAAACGGCGGTAAGCCTTCTTGAGGTCCGCTTCAGTGGCGCCGCGCTCGACACCCAGGACCTCATaataat                                                                                                       <  7:123329/107‑1 (MQ=255)                                                                                   aTCGCCCGGGTTGCGGTCCGGGTGGTACTTCATCGCCAAACGGCGGTAAGCCTTCTTGAGGTCCGCTTCAGTGGCGCCGCGCTCGACACCCAGGACCTCATaataat                                                                                                       >  8:123329/1‑107 (MQ=255)                                                                                   aTCGCCCGGGTTGCGGTCCGGGTGGTACTTCATCGCCAAACGGCGGTAAGCCTTCTTGAGGTCCGCTTCAGTGGCGCCGCGCTCGACACCCAGGACCTCATAATAATCACGCTTGGACATAGGTCATTTGCACCTTGTTGGGCGtgtg                                                              <  5:173901/148‑1 (MQ=255)                                                                                      gCCCGGGTTGCGGTCCGGGTGGTACTTCATCGCCAAACGGCGGTAAGCCTTCTTGAGGTCCGCTTCAGTGGCGCCGCGCTCGACACCCAGGACCTCATAATAATc                                                                                                      >  1:345517/1‑105 (MQ=255)                                                                                      gCCCGGGTTGCGGTCCGGGTGGTACTTCATCGCCAAACGGCGGTAAGCCTTCTTGAGGTCCGCTTCAGTGGCGCCGCGCTCGACACCCAGGACCTCATAATAATc                                                                                                      <  2:345517/105‑1 (MQ=255)                                                                                                 ggTCCGGGTGGTACTTCATCGCCAAACGGCGGTAAGCCTTCTTGAGGTCCGCTTCAGTGGCGCCGCGCTCGACACCCAGGACCTCATAATAATCACGCTTGGACATAGGTCATTTGCACCTTGTTGGGCGTGTgg                                                             <  7:86193/135‑1 (MQ=255)                                                                                                 ggTCCGGGTGGTACTTCATCGCCAAACGGCGGTAAGCCTTCTTGAGGTCCGCTTCAGTGGCGCCGAGCTCGACACCCAGGACCTCATAATAATCACGCTTGGACATAGGTCATTTGCACCTTGTTGGGCGTGTgg                                                             >  8:86193/1‑135 (MQ=255)                                                                                                     cGGGTGGTACTTCATCGCCAAACGGCGGTAAGCCTTCTTGAGGTCCGCTTCAGTGGCGCCGCGCTCGACACCCAGGACCTCATAATAATCACGCTTGGACATAGGTCATTTGCACCTTGTTGGGCGTGTGGCATCTGCGCCACGCCAt                                            <  8:96873/148‑1 (MQ=255)                                                                                                      gggTGGTACTTCATCGCCAAACGGCGGTAAGCCTTCTTGAGGTCCGCTTCAGTGGCGCCGCGCTCGACACCCAGGACCTCATAATAATCACGCTTGGACATAGGTCATTTGCACCTTGTTGGGCGTGTGGCATCTGCGCCACGCCATCa                                          <  5:181680/149‑1 (MQ=255)                                                                                                        gtggtACTTCATCGCCAAACGGCGGTAAGCCTTCTTGAGGTCCGCTTCAGTGGCGCCGCGCTCGACACCCAGGACCTCATAATAATCACGCTTGGACATAGGTCATTTGCAcc                                                                            >  8:62798/1‑113 (MQ=255)                                                                                                        gtggtACTTCATCGCCAAACGGCGGTAAGCCTTCTTGAGGTCCGCTTCAGTGGCGCCGCGCTCGACACCCAGGACCTCATAATAATCACGCTTGGACATAGGTCATTTGCAcc                                                                            <  7:62798/113‑1 (MQ=255)                                                                                                                 cATCGCCAAACGGCGGTAAGCCTTCTTGAGGTCCGCTTCAGTGGCGCCGCGCTCGACACCCAGGACCTCATAATAATCACGCTTGGACATAGGTCATTCGCACCTTGTTGGGCGTGTGGCATCTGCGCCACGCCATCAGCAc                                      <  3:206756/142‑1 (MQ=255)                                                                                                                 cATCGCCAAACGGCGGTAAGCCTTCTTGAGGTCCGCTTCAGTGGCGCCGCGCTCGACACCCAGGACCTCATAATAATCACGCTTGGACATAGGTCATTAGCACCTTGTTGGGCGTGTGGCATCTGCGCCACGCCATCAGCAc                                      >  4:206756/1‑142 (MQ=255)                                                                                                                  aTCGCCAAACGGCGGTAAGCCTTCTTGAGGTCCGCTTCAGTGGCGCCGCGCTCGACACCCAGGACCTCATAATAATCACGCTTGGACATAGGTCATTTGCACCTTGTTGGGCGTGTGGCATCTGCGCCACGCCATCAGCACccgcccgc                              >  5:4661/1‑149 (MQ=255)                                                                                                                         aaCGGCGGTAAGCCTTCTTGAGGTCCGCTTCAGTGGCGCCGCGCTCGACACCCAGGACCTCATAATAATCACGCTTGGACATAGGTCATTTGCACCTTGTTGGGCGTGTGGCATCTGCGCCACGCCATCAGCACCCGCCCGCTACCCAt                       >  4:88748/1‑149 (MQ=255)                                                                                                                          aCGGCGGTAAGCCTTCTTGAGGTCCGCTTCAGTGGCGCCGCGCTCGACACCCAGGACCTCATAATAATCACGCTTGGACATa                                                                                         >  4:250454/1‑82 (MQ=255)                                                                                                                                      cttcttGAGGTCCGCTTCAGTGGCGCCGCGCTCGACACCCAGGACCTCATAATAATCACGCTTGGACATAGGTCATTTGCACCTTGTTGGGCGTGTGGCATCTGCGCCACGCCATCAGCACCCGCCCGCTACCCATTAAGAGCCACTGa          >  6:14159/1‑149 (MQ=255)                                                                                                                                       ttcttGAGGTCCGCTTCAGTGGCGCCGCGCTCGACACCCAggacctcaagaaggcttaccgccgtttggcgatgaagtaccacccggaccgcaacccgggcgataaagaatcggaagacaagttcaaggaggccaacgaggcctacg           <  3:320131‑M2/147‑108 (MQ=255)                                                                                                                                       ttcttGAGGTCCGCTTCAGTGGCGCCGCGCTCGACACCCAggacctcaagaaggcttaccgccgtttggcgatgaagtaccacccggaccgcaacccgggcgataaagaatcggaagacaagttcaaggaggccaacgaggcctacg           <  2:139510‑M2/147‑108 (MQ=255)                                                                                                                                          ttGAGGTCCGCTTCAGTGGCGCCGCGCTCGACACCCAggacctcaagaaggcttaccgccgtttggcgatgaagtaccacccggaccgcaacccgggcgataaagaatcggaagacaagttcaag                              <  6:65161‑M2/125‑89 (MQ=255)                                                                                                                                          ttGAGGTCCGCTTCAGTGGCGCCGCGCTCGACACCCAggacctcaagaaggcttaccgccgtttggcgatgaagtaccacccggaccgcaacccgggcgataaagaatcggaagacaagttcaag                              >  5:65161‑M2/1‑37 (MQ=255)                                                                                                                                           tGAGGTCCtgggtgtcgagcgcggcgccactgaagcggacctcaagaaggcttaccgccgtttggcgatgaagtaccacccggaccgcaacccgggcgataaagaagcggaagacaagttcaaggaggccaacgag                  >  7:204855‑M1/1‑8 (MQ=255)                                                                                                                                            gAGGTCCtgggtgtcgagcgcggcgccactgaagcggacctcaagaaggcttaccgccgtttggcgatgaagtaccacccggaccgcaacccgggcgataaagaatcggaagacaagttcaaggaggccaacgaggcctacgaagtgct    >  2:161220‑M1/1‑7 (MQ=255)                                                                                                                                            gAGGTCCGCTTCAGTGGCGCCGCGCTCGACACCCAGGACCTCATAATAATCACGCTTGGACATAGGTCATTTGCACCTTGTTGGGCGTGTGGCATCTGCGCCACGCCATCAGCACCCGCCCGCTACCCATTAAGAGCCACTGACAGa      <  3:100686/147‑1 (MQ=255)                                                                                                                                              ggTCCtgggtgtcgagcgcggcgccactgaagcggacctcaagaaggcttaccgccgtttggcgatgaagtaccacccggaccgcaacccgggcgataaagaatcggaagacaagttcaaggaggccaacgaggcctacgaagtgctgt  <  6:173901‑M1/149‑145 (MQ=255)                                                                                                                                                  ctgggtgtcgagcgcggcgccactgaagcggacctcaagaaggcttaccgccgtttggcgatgaagtaccacccggaccgcaacccgggcgataaagaatcggaagacaagttcaag                              >  2:276328‑M1/1‑1 (MQ=255)                                                                                                                                                  ctgggtgtcgagcgcggcgccactgaagcggacctcaagaaggcttaccgccgtttggcgatgaagtaccacccggaccgcaacccgggcgataaagaatcggaagacaagttcaag                              <  1:276328‑M1/117‑117 (MQ=255)                                                                                                                                                  |                                                                                                                                                 GGTCGAAGGCCGCACGCTTGCTCGCGTCTGACAGCACTTCGTAGGCCTCGTTGGCCTCCTTGAACTTGTCTTCCGATTCTTTATCGCCCGGGTTGCGGTCCGGGTGGTACTTCATCGCCAAACGGCGGTAAGCCTTCTTGAGGTCCGCTTCAGTGGCGCCGCGCTCGACACCCAGGACCTCATAATAATCACGCTTGGACATAGGTCATTTGCACCTTGTTGGGCGTGTGGCATCTGCGCCACGCCATCAGCACCCGCCCGCTACCCATTAAGAGCCACTGACAGATGCT  >  NC_002947/5375239‑5375528

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.