New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5489812 =	38 (0.650)	3 (0.050)	3/248	NT	7.0%	coding (294/597 nt)	PP_4825	MarC family membrane protein
	?	NC_002947	5489865 =	43 (0.760)					coding (347/597 nt)	PP_4825	MarC family membrane protein

TAAAGCTGGCCAGGGCAATGCTGACGATGGCCAGCAGTTTTTCATCCCAGTGCGGCTGGCTCACCCCCATCACCAGCAGGGCACCGATGGTGCCGGGGCCAACGGTCAGCGGAATGGTCAGCGGTACGATGGTCACATCCTGCTGAACGTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5489963‑5489812 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgttgGCCCCGGCACCATCGGTGCCCTGCTGGTGATGGGGGTGAGCCAGCCGCACTGGGATGAAAAACTGCTGGCCA  >  NC_002947/5489865‑5489936                                                                                                                                                                                                                                  TAAAGCTGGCCAGGGCAATGCTGACGATGGCCAGCAGTTTTTCATCCCAGTGCGGCTGGCTCACCCCCATCACCAGCAGGGCACCGATGGTGCCGGGGCCAACGGTCAGCGGAATGGTCAGCGGTACGATGGTCACATCCTGCTGAACG                                                                             >  2:273107/1‑149   acGCTGGCCAGGGCAATGCTGACGATGGCCAGCAGTTTTTCATCCCAGTGCGGCTGGCGCACCCCCATCACCAGCAGGGCACCGATGGTGCCGGGGCCAACGGTCAGCGGAATGGTCAGCGGTACGATGGTCACATCCTGCTGAACGTT                                                                           <  6:371141/147‑1                                                                                                    CAACGGTCAGCGGAATGGTCAGCGGTACGATGGTCACATCCTGCTGAACGTTGGCCCCGGCACCATCGGTGCCCTGCTGGTGATGGGGGTGAGCCAGCCGCACTGGGATGAA               <  5:189185/112‑1                                                                                                    CAACGGTCAGCGGAATGGTCAGCGGTACGATGGTCACATCCTGCTGAACGTTGGCCCCGGCACCATCGGTGCCCTGCTGGTGATGGGGGTGAGCCAGCCGCACTGGGATGAA               >  6:189185/1‑112                                                                                                     AACGGTCAGCGGAATGGTCAGCGGTACGATGGTCACATCCTGCTGAACGTTGGCCCCGGCACCATCGGTGCCCTGCTGGTGATGGGGGTGAGCCAGCCGCACTGGGATGAAAAACTGCTGGCCA  >  2:180299/1‑124                                                                                                                                                                                                                                  TAAAGCTGGCCAGGGCAATGCTGACGATGGCCAGCAGTTTTTCATCCCAGTGCGGCTGGCTCACCCCCATCACCAGCAGGGCACCGATGGTGCCGGGGCCAACGGTCAGCGGAATGGTCAGCGGTACGATGGTCACATCCTGCTGAACGTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5489963‑5489812 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgttgGCCCCGGCACCATCGGTGCCCTGCTGGTGATGGGGGTGAGCCAGCCGCACTGGGATGAAAAACTGCTGGCCA  >  NC_002947/5489865‑5489936

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.