New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5489812 =	38 (0.650)	3 (0.050)	3/248	NT	7.0%	coding (294/597 nt)	PP_4825	MarC family membrane protein
	?	NC_002947	5489865 =	43 (0.760)					coding (347/597 nt)	PP_4825	MarC family membrane protein

TCGCCAGCGTGTTGCTGTACCTGTTCGGGCGGGCGATCTTCGGAATTTTCGGCATCACCGCCGATGCCTTCCGCATCGGTGCTGGCAGCGTGCTGTTCATTTCGGCCCTGGGCATGGCCCAGGGCAAGCCGGCGGTACAGGCAGACAACGTTCAGCAGGATGTGACCATCGTACCGCTGACCATTCCGCTGACCGTTGGCCCCGGCACCATCGGTGCCCTGCTGGTGATGGGGGTGAGCCAGCCGCACTGGGATGAAAAACTGCTGGCCATCGTCAGCATTGCCCTGGC  >  NC_002947/5489667‑5489955                                                                                                                                                  |                                                                                                                                                tCGCCAGCGTGTTGCTGTACCTGTTCGGGCGGGCGATCTTCGGAATTTTCGGCATCACCGCCGATGCCTTCCGCATCGGTGCTGGCAGCGTGCTGTTCATTTCGGCCCTGGGCATGGCCCAGGGCAAGCCGGCGGTACAGGCAGACAAc                                                                                                                                              >  6:30290/1‑149 (MQ=255)      aGCGTGTTGCTGTACCTGTTCGGGCGGGCGATCTTCGGAATTTTCGGCATCACCGCCGATGCCTTCCGCATCGGTGCTGGCAGCGTGCTGTTCATTTCGGCCCTGGGCATGGCCCAGGGCAAGCCGGCGGTACAGGCAGACAACGTTca                                                                                                                                         <  3:107519/149‑1 (MQ=255)              gCTGTACCTGTTCGGGCGGGCGATCTTCGGAATTTTCGGCATCACCGCCGATGCCTTCCGCATCGGTGCTGGCAGCGTGCTGTTCATTTCGGCCCTGGGCATGGCCCAGGGCAAGCCGGCGGTACAGGCAGACAACGTTCAGCAGGAt                                                                                                                                  <  6:285739/148‑1 (MQ=255)                  tACCTGTTCGGGCGGGCGATCTTCGGAATTTTCGGCATCACCGCCGATGCCTTCCGCATCGGTGCTGGCAGCGTGCTGTTCATTTCGGCCCTGGGCATGGCCCAGGGCAAGCCGGCGGTACAGGCAGACAACGTTCAGCAGGATGTGa                                                                                                                              <  1:65717/148‑1 (MQ=255)                  tACCTGTTCGGGCGGGCGATCTTCGGAATTTTCGGCATCACCGCCGATGCCTTCCGCATCGGTGCTGGCAGCGTGCTGTTCATTTCGGCCCTGGGCATGGCCCAGGGCAAGCCGGCGGTACAGGCAGACAACGTTCAGCAGGATGTGAc                                                                                                                             <  3:133178/149‑1 (MQ=255)                     cTGTTCGGGCGGGCGATCTTCGGAATTTTCGGCATCACCGCCGATGCCTTCCGCATCGGTGCTGGCAGCGTGCTGTTCATTTCGGCCCTGGGCATGGCCCAGGGCAAGCCGGCGGTACAGGCAGACAACGTTCAGCAgg                                                                                                                                    <  8:200491/139‑1 (MQ=255)                     cTGTTCGGGCGGGCGATCTTCGGAATTTTCGGCATCACCGCCGATGCCTTCCGCATCGGTGCTGGCAGCGTGCTGTTCATTTCGGCCCTGGGCATGGCCCAGGGCAAGCCGGCGGTACAGGCAGACAACGTTCAGCAgg                                                                                                                                    >  7:200491/1‑139 (MQ=255)                     cTGTTCGGGCGGGCGATCTTCGGAATTTTCGGCATCACCGCCGATGCCTTCCGCATCGGTGCTGGCAGCGTGCTGTTCATTTCGGCCCTGGGCATGGCCCAGGGCAAGCCGGCGGTACAGGCAGACAACGTTCAGCAGGa                                                                                                                                   >  4:148601/1‑140 (MQ=255)                     cTGTTCGGGCGGGCGATCTTCGGAATTTTCGGCATCACCGCCGATGCCTTCCGCATCGGTGCTGGCAGCGTGCTGTTCATTTCGGCCCTGGGCATGGCCCAGGGCAAGCCGGCGGTACAGGCAGACAACGTTCAGCAGGa                                                                                                                                   <  3:148601/140‑1 (MQ=255)                                 gcgATCTTCGGAATTTTCGGCATCACCGCCGATGCCTTCCGCATCGGTGCTGGCAGCGTGCTGTTCATTTCGGCCCTGGGCATGGCCCAGGGCAAGCCGGCGGTACAGGCAGACAACGTTCAGCAGGATGTGACCATCGTACCGCTGAc                                                                                                              >  3:117394/1‑149 (MQ=255)                                        tCGGAATTTTCGGCATCACCGCCGATGCCTTCCGCATCGGTGCTGGCAGCGTGCTGTTCATTTCGGCCCTGGGCATGGCCCAGGGCAAGCCGGCGGTACAGGCAGACAACGTTca                                                                                                                                         <  4:324744/115‑1 (MQ=255)                                        tCGGAATTTTCGGCATCACCGCCGATGCCTTCCGCATCGGTGCTGGCAGCGTGCTGTTCATTTCGGCCCTGGGCATGGCCCAGGGCAAGCCGGCGGTACAGGCAGACAACGTTca                                                                                                                                         >  3:324744/1‑115 (MQ=255)                                          ggAATTTTCGGCATCACCGCCGATGCCTTCCGCATCGGTGCTGGCAGCGTGCTGTTCATTTCGGCCCTGGGCATGGCCCAGGGCAAGCCGGCGGTACAGGCAGACAACGTTCAGCAGGATGTGACCATCGTACCGCTGACCATTCCGCt                                                                                                     >  2:94182/1‑149 (MQ=255)                                           tatttttCGGCATCCCCGCCTTTGCCTTCCGCAGGGGTGCGGGCTGCGTGCTGTTCATTTCGGCCCTGGTCATGGCCCTGGGCAAGCCGGCGGTACAGGCAGACAACGTTCAGCAGGATGTGACCATCGTACCGCTGACCATTCCGCTg                                                                                                    <  6:37538/146‑1 (MQ=255)                                           gAATTTTCGGCATCACCGCCGATGCCTTCCGCATCGGTGCTGGCAGCGTGCTGTTCATTTCGGCCCTGGGCATGGCCCAGGGCAAGCCGGCGGTACAGGCAGACAACGTTCAGCAGGATGTGACCATCGTACCGCTGACCATTCCGCt                                                                                                     >  3:93680/1‑148 (MQ=255)                                              ttttCGGCATCACCGCCGATGCCTTCCGCATCGGTGCTGGCAGCGTGCTGTTCATTTCGGCCCTGGGCATGGCCCAGGGCAAGCCGGCGGTACAGGCAGACAACGTTCAGCAGGATGTGACCATCGTACCGCTGACCATTCCGCTGAcc                                                                                                 <  4:117394/149‑1 (MQ=255)                                                  cGGCATCACCGCCGATGCCTTCCGCATCGGTGTTGGCAGCGTGCTGTTCATTTCGGCCCTGGGCATGGCCCAGGGCAAGCCGGCGGTACAGGCAGACAACGTTCAGCAGGATGTGACCATCGTACCGCTGACCATTCCg                                                                                                       >  1:266101/1‑139 (MQ=255)                                                  cGGCATCACCGCCGATGCCTTCCGCATCGGTGTTGGCAGCGTGCTGTTCATTTCGGCCCTGGGCATGGCCCAGGGCAAGCCGGCGGTACAGGCAGACAACGTTCAGCAGGATGTGACCATCGTACCGCTGACCATTCCg                                                                                                       <  2:266101/139‑1 (MQ=255)                                                               gATGCCTTCCGCATCGGTGCTGGCAGCGTGCTGTTCATTTCGGCCCTGGGCATGGCCCAGGGCAAGCCGGCGGTACAGGCAGACAACGTTCAGCAGGATGTGACCATCGTACCGCTGACCATTCCGCTGACCGTTGGCCCCGGCACCAt                                                                                <  1:94182/149‑1 (MQ=255)                                                                        cGCATCGGTGCTGGCAGCGTGCTGTTCATTTCGGCCCTGGGCATGGCCCAGGGCAAGCCGGCGGTACAGGCAGACAACGTTCAGCAGGATGTGACCATCGTACCGCTGACCATTCCGCTGACCGTTGGCCCCGGCACCATCGGTGccc                                                                        <  5:135964/148‑1 (MQ=255)                                                                          tggccagcagtttttcatcccagtgcggctggctcacccccatcaccagcagggcaccgatggtgccggggcCAACGTTCAGCAGGATGTGACCATCGTACCGCTGACCATTCCGCTGACCGtt                                                                                              >  2:180299‑M1/73‑124 (MQ=255)                                                                           aTCGGTGCTGGCAGCGTGCTGTTCATATCGGCCCTGGGCATGGCCCAGGGCAAGCCGGCGGTACAGGCAGACAACGTTCAGCAGGATGTGACCATCGTACCGCTGACCATTCCGCTGACCGTTGGCCCCGGCACCATCGGTGCCctgct                                                                    >  8:156192/1‑149 (MQ=255)                                                                                   tGGCAGCGTGCTGTTCATTTCGGCCCTGGGCATGGCCCAGGGCAAGCCGGCGGTACTGGCAGACAACGTTCAGCAGGATGTGACCATCGTACCGCTGACCATTCCGCTGACCGTTGGCCCCGGCACCATCGGTGCCCTGCTGGTGATgg                                                            >  3:152263/1‑149 (MQ=255)                                                                                   tGGCAGCGTGCTGTTCATTTCGGCCCTGGGCATGGCCCAGGGCAAGCCGGCGGTACAGGCAGACAACGTTCAGCAGGATGTGACCATCGTACCGCTGACCATTCCGCTGACCGTTGGCCCCGGCACCATCGGTGCCCTGCTGGTGATgg                                                            <  5:30290/149‑1 (MQ=255)                                                                                     gCAGCGTGCTGTTCATTTCGGCCCTGGGCATGGCCCAGGGCAAGCCGGCGGTACAGGCAGTCAACGTTCAGCAGGATGTGACCATCGTACCGCTGACCATTCCGCTGACCGTTGGCCCCGGCACCATCGGTGCCCTGCTGGTGATgggg                                                          <  1:310526/149‑1 (MQ=255)                                                                                     gCAGCGTGCTGTTCATTTCGGCCCTGGGCATGGCCCAGGGCAAGCCGGCGGTACAGGCAGACAACGTTCAGCAGGATGTGACCATCGTACCGCTGACCATTCCGCTGACCGTTGGCCCCGGCACCATCGGTGCCCTGCTGGTGATgggg                                                          <  4:93680/149‑1 (MQ=255)                                                                                       ttcatcccagtgcggctggctcacccccatcaccagcagggcaccgatggtgccggggcCAACGTTCAGCAGGATGTGACCATCGTACCGCTGACCATTCCGCTGACCGTTg                                                                                             <  5:189185‑M1/53‑1 (MQ=255)                                                                                       ttcatcccagtgcggctggctcacccccatcaccagcagggcaccgatggtgccggggcCAACGTTCAGCAGGATGTGACCATCGTACCGCTGACCATTCCGCTGACCGTTg                                                                                             >  6:189185‑M1/60‑112 (MQ=255)                                                                                         cGTGCTGTTCATTTCGGCCCTGGGCATGGCCCAGGGCAAGCCGGCGGTACAGGCAGACAACGTTCAGCAGGATGTGACCATCGTACCGCTGACCATTCCGCTGACCGTTGGCCCCGGCACCATCGGTGCCCTGCTGGTGATGGGGGTGa                                                      <  8:335687/149‑1 (MQ=255)                                                                                         cGTGCTGTTCATCTCGGCCCTGGGCATGGCCCAGGGCAAGCCGGCGGTACAGGCAGACAACGTTCAGCAGGATGTGACCATCGTACCGCTGACCATTCCGCTGACCGTTGGCCCCGGCACCATCGGTGCCCTGCTGGTGATGGGGGTGa                                                      <  7:156192/149‑1 (MQ=255)                                                                                                ttCATTTCGGCCCTGGGCATGGCCCAGGGCAAGCCGGCGGTACAGGCAGACAACGTTCAGCAGGATGTGACCATCGTACCGCTGACCATTCCGCTGACCGTTGGCCCCGGCACCATCGGTGCCCTGCTGGTGATGGGGGTGagccagcc                                               >  4:80870/1‑149 (MQ=255)                                                                                                   aTTTCGGCCCTGGGCATGGCCCAGGGCAAGCCGGCGGTACAGGCAGACAACGTTCAGCAGGATGTGACCATCGTACCGCTGACCATTCCGCTGACCGTTGGCCCCGGCACCATCGGTGCCCTGCTGGTGATGGGGGTGAGCCAGCCGCa                                            >  1:273107/1‑149 (MQ=255)                                                                                                    tttCGGCCCTGGGCATGGCCCAGGGCAAGCCGGCGGTACAGGCAGACAACGTTCAGCAGGATGTGACCATCGTACCGCTGACCATTCCGCTGCCCGTTGGCCCCGGCACCATCGGTGCCCTGCTGGTGATGGGGGTGAGCCAGCCGCAc                                           >  2:237805/1‑149 (MQ=255)                                                                                                        ggCCCTGGGCATGGCCCAGGGCAAGCCGGCGGTACTGGCAGACAACGTTCAGCAGGATGTGACCATCGTACCGCTGACCATTCCGCTGACCGTTGGCCCCGGCACCATCGGTGCCCTGCTGGTGATGGGGGTGAGCCAGCCGCACTggg                                       <  4:152263/149‑1 (MQ=255)                                                                                                         gCCCTGGGCATGGCCCAGGGCAAGCCGGCGGTACAGGCAGACAACGTTCAGCAGGATGTGACCATCGTACCGCTGACCATTCCGCTGACCGTTGGCCCCGGCACCATCGGTGCCCTGCTGGTGATGGGGGTGa                                                      <  4:367529/133‑1 (MQ=255)                                                                                                         gCCCTGGGCATGGCCCAGGGCAAGCCGGCGGTACAGGCAGACAACGTTCAGCAGGATGTGACCATCGTACCGCTGACCATTCCGCTGACCGTTGGCCCCGGCACCATCGGTGCCCTGCTGGTGATGGGGGTGa                                                      >  3:367529/1‑133 (MQ=255)                                                                                                          cccTGGGCATGGCCCAGGGCAAGCCGGCGGTACAGGCAGACAACGTTCAGCAGGATGTGACCATCGTACCGCTGACCATTCCGCTGACCGTTGGCCCCGGCACCATCGGTGCCCTGCTGGTGATGGGGGGGAGCCAGCCGCACGGGGAt                                     >  2:293897/1‑149 (MQ=255)                                                                                                                       ccAGGGCAAGCCGGCGGTACAGGCAGACAACGTTCAGCAGGATGTGACCATCGTACCGCTGACCATTCCGCTGACCGTTGGCCCCGGCACCATCGGTGCCCTGCTGGTGATGGGGGTGAGCCAGCCGCACTGGGATGAAAAACTGCTgg                        >  6:230438/1‑149 (MQ=255)                                                                                                                       ccAGGGCAAGCCGGCGGTACAGGCAGACAACGTTCAGCAGGATGTGACCATCGTACCGCTGACCATTCCGCTGACCGTTGGCCCCGGCACCATCGGTGCCCTGCTGGTGATGGGGGTGAGCCAGCCGCACTGGGATGAAAAACTGCTgg                        <  5:230438/149‑1 (MQ=255)                                                                                                                              aaGCCGGCGGTACAGGCAGACAACGTTCAGCAGGATGTGACCATCGTACCGCTGACCATTCCGCTGACCGTTGGCCCCGGCACCATCGGTGCCCTGCTGGTGATGGGGGTGAGCCAGCCGCACTGGGATGAAAAACTGCTGGCCATCg                  >  5:54407/1‑148 (MQ=255)                                                                                                                                         aCAGGCAGACAACGTTCAGCAGGATGTGACCATCGTACCGCTGACCATTCCGCTGACCGTTGGCCCCGGCACCATCGGTGCCCTGCTGGTGa                                                               <  7:296842/92‑1 (MQ=255)                                                                                                                                         aCAGGCAGACAACGTTCAGCAGGATGTGACCATCGTACCGCTGACCATTCCGCTGACCGTTGGCCCCGGCACCATCGGTGCCCTGCTGGTGa                                                               >  8:296842/1‑92 (MQ=255)                                                                                                                                             gCAGACAACGTTCAGCAGGATGTGACCATCGTACCGCTGACCATTCCGCTGACCGTTGGCCCCGGCACCATCGGTGCCCTGCTGGTGATGGGGGTGAGCCAGCCGCACTGGGATGAAAAACTGCTGGCCATCGTCAGCATTGCCCTGGc  >  3:304495/1‑149 (MQ=255)                                                                                                                                                  |                                                                                                                                                TCGCCAGCGTGTTGCTGTACCTGTTCGGGCGGGCGATCTTCGGAATTTTCGGCATCACCGCCGATGCCTTCCGCATCGGTGCTGGCAGCGTGCTGTTCATTTCGGCCCTGGGCATGGCCCAGGGCAAGCCGGCGGTACAGGCAGACAACGTTCAGCAGGATGTGACCATCGTACCGCTGACCATTCCGCTGACCGTTGGCCCCGGCACCATCGGTGCCCTGCTGGTGATGGGGGTGAGCCAGCCGCACTGGGATGAAAAACTGCTGGCCATCGTCAGCATTGCCCTGGC  >  NC_002947/5489667‑5489955

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.