New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5489812 =	38 (0.650)	3 (0.050)	3/248	NT	7.0%	coding (294/597 nt)	PP_4825	MarC family membrane protein
	?	NC_002947	5489865 =	43 (0.760)					coding (347/597 nt)	PP_4825	MarC family membrane protein

GATGCCTTCCGCATCGGTGCTGGCAGCGTGCTGTTCATTTCGGCCCTGGGCATGGCCCAGGGCAAGCCGGCGGTACAGGCAGACAACGTTCAGCAGGATGTGACCATCGTACCGCTGACCATTCCGCTGACCGTTGGCCCCGGCACCATCGGTGCCCTGCTGGTGATGGGGGTGAGCCAGCCGCACTGGGATGAAAAACTGCTGGCCATCGTCAGCATTGCCCTGGCCAGCTTTACCGTAGGCCTGGTGCTGTATCTATCGCACGGTATCGAGCGC  >  NC_002947/5489729‑5490004                                                                                                                                         |                                                                                                                                            gATGCCTTCCGCATCGGTGCTGGCAGCGTGCTGTTCATTTCGGCCCTGGGCATGGCCCAGGGCAAGCCGGCGGTACAGGCAGACAACGTTCAGCAGGATGTGACCATCGTACCGCTGACCATTCCGCTGACCGTTGGCCCCGGCACCAt                                                                                                                                 <  1:94182/149‑1 (MQ=255)          cGCATCGGTGCTGGCAGCGTGCTGTTCATTTCGGCCCTGGGCATGGCCCAGGGCAAGCCGGCGGTACAGGCAGACAACGTTCAGCAGGATGTGACCATCGTACCGCTGACCATTCCGCTGACCGTTGGCCCCGGCACCATCGGTGccc                                                                                                                         <  5:135964/148‑1 (MQ=255)             aTCGGTGCTGGCAGCGTGCTGTTCATATCGGCCCTGGGCATGGCCCAGGGCAAGCCGGCGGTACAGGCAGACAACGTTCAGCAGGATGTGACCATCGTACCGCTGACCATTCCGCTGACCGTTGGCCCCGGCACCATCGGTGCCctgct                                                                                                                     >  8:156192/1‑149 (MQ=255)                     tGGCAGCGTGCTGTTCATTTCGGCCCTGGGCATGGCCCAGGGCAAGCCGGCGGTACTGGCAGACAACGTTCAGCAGGATGTGACCATCGTACCGCTGACCATTCCGCTGACCGTTGGCCCCGGCACCATCGGTGCCCTGCTGGTGATgg                                                                                                             >  3:152263/1‑149 (MQ=255)                     tGGCAGCGTGCTGTTCATTTCGGCCCTGGGCATGGCCCAGGGCAAGCCGGCGGTACAGGCAGACAACGTTCAGCAGGATGTGACCATCGTACCGCTGACCATTCCGCTGACCGTTGGCCCCGGCACCATCGGTGCCCTGCTGGTGATgg                                                                                                             <  5:30290/149‑1 (MQ=255)                       gCAGCGTGCTGTTCATTTCGGCCCTGGGCATGGCCCAGGGCAAGCCGGCGGTACAGGCAGTCAACGTTCAGCAGGATGTGACCATCGTACCGCTGACCATTCCGCTGACCGTTGGCCCCGGCACCATCGGTGCCCTGCTGGTGATgggg                                                                                                           <  1:310526/149‑1 (MQ=255)                       gCAGCGTGCTGTTCATTTCGGCCCTGGGCATGGCCCAGGGCAAGCCGGCGGTACAGGCAGACAACGTTCAGCAGGATGTGACCATCGTACCGCTGACCATTCCGCTGACCGTTGGCCCCGGCACCATCGGTGCCCTGCTGGTGATgggg                                                                                                           <  4:93680/149‑1 (MQ=255)                           cGTGCTGTTCATTTCGGCCCTGGGCATGGCCCAGGGCAAGCCGGCGGTACAGGCAGACAACGTTCAGCAGGATGTGACCATCGTACCGCTGACCATTCCGCTGACCGTTGGCCCCGGCACCATCGGTGCCCTGCTGGTGATGGGGGTGa                                                                                                       <  8:335687/149‑1 (MQ=255)                           cGTGCTGTTCATCTCGGCCCTGGGCATGGCCCAGGGCAAGCCGGCGGTACAGGCAGACAACGTTCAGCAGGATGTGACCATCGTACCGCTGACCATTCCGCTGACCGTTGGCCCCGGCACCATCGGTGCCCTGCTGGTGATGGGGGTGa                                                                                                       <  7:156192/149‑1 (MQ=255)                                  ttCATTTCGGCCCTGGGCATGGCCCAGGGCAAGCCGGCGGTACAGGCAGACAACGTTCAGCAGGATGTGACCATCGTACCGCTGACCATTCCGCTGACCGTTGGCCCCGGCACCATCGGTGCCCTGCTGGTGATGGGGGTGagccagcc                                                                                                >  4:80870/1‑149 (MQ=255)                                     aTTTCGGCCCTGGGCATGGCCCAGGGCAAGCCGGCGGTACAGGCAGACAACGTTCAGCAGGATGTGACCATCGTACCGCTGACCATTCCGCTGACCGTTGGCCCCGGCACCATCGGTGCCCTGCTGGTGATGGGGGTGAGCCAGCCGCa                                                                                             >  1:273107/1‑149 (MQ=255)                                      tttCGGCCCTGGGCATGGCCCAGGGCAAGCCGGCGGTACAGGCAGACAACGTTCAGCAGGATGTGACCATCGTACCGCTGACCATTCCGCTGCCCGTTGGCCCCGGCACCATCGGTGCCCTGCTGGTGATGGGGGTGAGCCAGCCGCAc                                                                                            >  2:237805/1‑149 (MQ=255)                                          ggCCCTGGGCATGGCCCAGGGCAAGCCGGCGGTACTGGCAGACAACGTTCAGCAGGATGTGACCATCGTACCGCTGACCATTCCGCTGACCGTTGGCCCCGGCACCATCGGTGCCCTGCTGGTGATGGGGGTGAGCCAGCCGCACTggg                                                                                        <  4:152263/149‑1 (MQ=255)                                           gCCCTGGGCATGGCCCAGGGCAAGCCGGCGGTACAGGCAGACAACGTTCAGCAGGATGTGACCATCGTACCGCTGACCATTCCGCTGACCGTTGGCCCCGGCACCATCGGTGCCCTGCTGGTGATGGGGGTGa                                                                                                       <  4:367529/133‑1 (MQ=255)                                           gCCCTGGGCATGGCCCAGGGCAAGCCGGCGGTACAGGCAGACAACGTTCAGCAGGATGTGACCATCGTACCGCTGACCATTCCGCTGACCGTTGGCCCCGGCACCATCGGTGCCCTGCTGGTGATGGGGGTGa                                                                                                       >  3:367529/1‑133 (MQ=255)                                            cccTGGGCATGGCCCAGGGCAAGCCGGCGGTACAGGCAGACAACGTTCAGCAGGATGTGACCATCGTACCGCTGACCATTCCGCTGACCGTTGGCCCCGGCACCATCGGTGCCCTGCTGGTGATGGGGGGGAGCCAGCCGCACGGGGAt                                                                                      >  2:293897/1‑149 (MQ=255)                                                         ccAGGGCAAGCCGGCGGTACAGGCAGACAACGTTCAGCAGGATGTGACCATCGTACCGCTGACCATTCCGCTGACCGTTGGCCCCGGCACCATCGGTGCCCTGCTGGTGATGGGGGTGAGCCAGCCGCACTGGGATGAAAAACTGCTgg                                                                         >  6:230438/1‑149 (MQ=255)                                                         ccAGGGCAAGCCGGCGGTACAGGCAGACAACGTTCAGCAGGATGTGACCATCGTACCGCTGACCATTCCGCTGACCGTTGGCCCCGGCACCATCGGTGCCCTGCTGGTGATGGGGGTGAGCCAGCCGCACTGGGATGAAAAACTGCTgg                                                                         <  5:230438/149‑1 (MQ=255)                                                                aaGCCGGCGGTACAGGCAGACAACGTTCAGCAGGATGTGACCATCGTACCGCTGACCATTCCGCTGACCGTTGGCCCCGGCACCATCGGTGCCCTGCTGGTGATGGGGGTGAGCCAGCCGCACTGGGATGAAAAACTGCTGGCCATCg                                                                   >  5:54407/1‑148 (MQ=255)                                                                           aCAGGCAGACAACGTTCAGCAGGATGTGACCATCGTACCGCTGACCATTCCGCTGACCGTTGGCCCCGGCACCATCGGTGCCCTGCTGGTGa                                                                                                                <  7:296842/92‑1 (MQ=255)                                                                           aCAGGCAGACAACGTTCAGCAGGATGTGACCATCGTACCGCTGACCATTCCGCTGACCGTTGGCCCCGGCACCATCGGTGCCCTGCTGGTGa                                                                                                                >  8:296842/1‑92 (MQ=255)                                                                               gCAGACAACGTTCAGCAGGATGTGACCATCGTACCGCTGACCATTCCGCTGACCGTTGGCCCCGGCACCATCGGTGCCCTGCTGGTGATGGGGGTGAGCCAGCCGCACTGGGATGAAAAACTGCTGGCCATCGTCAGCATTGCCCTGGc                                                   >  3:304495/1‑149 (MQ=255)                                                                                    caacggtcagcggaatggtcagcggtacgatggtcacatcctgctgaacgttgGCCCCGGCACCATCGGTGCCCTGCTGGTGATGGGGGTGAGCCAGCCGCACTGGGATGaa                                                                                   <  5:189185‑M2/59‑1 (MQ=255)                                                                                    caacggtcagcggaatggtcagcggtacgatggtcacatcctgctgaacgttgGCCCCGGCACCATCGGTGCCCTGCTGGTGATGGGGGTGAGCCAGCCGCACTGGGATGaa                                                                                   >  6:189185‑M2/54‑112 (MQ=255)                                                                                     aacggtcagcggaatggtcagcggtacgatggtcacatcctgctgaacgttgGCCCCGGCACCATCGGTGCCCTGCTGGTGATGGGGGTGAGCCAGCCGCACTGGGATGAAAAACTGCTGGCCa                                                                      >  2:180299‑M2/53‑124 (MQ=255)                                                                                     AACGTTCAGCAGGATGTGACCATCGTACCGCTGACCATTCCGCTGACCGTTGGCCCCGGCACCATCGGTGCCCTGCTGGTGATGGGGGTGCGCCAGCCGCACTGGGATGAAAAACTGCTGGCCATCGTCAGCATTGCCCTGGCCagcgt                                             <  6:371141‑M1/149‑3 (MQ=255)                                                                                       CGTTCAGCAGGATGTGACCATCGTACCGCTGACCATTCCGCTGACCGTTGGCCCCGGCACCATCGGTGCCCTGCTGGTGATGGGGGTGAGCCAGCCGCACTGGGATGAAAAACTGCTGGCCATCGTCAGCATTGCCCTGGCCAGCTTTa                                           >  2:273107‑M1/1‑149 (MQ=255)                                                                                             gcagGATGTGACCATCGTACCGGTGACCATTCCGCTGACCGTTGGCCCCGGCACCATCGGTGCCCTGCTGGTGATGGGGGTGAGCCAGCCGCACTGGGATGAAAAACTGCTGGCCATc                                                                    >  7:55559/1‑118 (MQ=255)                                                                                             gcagGATGTGACCATCGTACCGCTGACCATTCCGCTGACCGTTGGCCCCGGCACCATCGGTGCCCTGCTGGTGATGGGGGTGAGCCAGCCGCACTGGGATGAAAAACTGCTGGCCATc                                                                    <  8:55559/118‑1 (MQ=255)                                                                                               agGATGTGACCATCGTACCGCTGACCATTCCGCTGACCGTTGGCCCCGGCACCATCGGTGCCCTGCTGGTGATGGGGGTGAGCCAGCCGCACTGGGATGAAAAACTGCTGGCCATCGTCAGCATTGCCCTGGCCAGCTTTACCGTAGGc                                   <  3:80870/149‑1 (MQ=255)                                                                                                     tgACCATCGTACCGCTGACCATTCCGCTGACCGTTGGCCCCGGCACCATCGGTGCCCTGCTGGGGATGGGGGTGAGCCAGCCGCACTGGGATGAAAAACTGCTGGCCATCGTCAGCATTGCCCTGGCCAGATTTACCTTCGGCATGGt                              >  6:361285/1‑148 (MQ=255)                                                                                                       aCCATCGTACCGCTGACCATTCCGCTGACCGTTGGCCCCGGCACCATCGGTGCCCTGCTGGTGATGGGGGTGAGCCAGCCGCACTGGGATGAAAAACTGCTGGCCATCGTCAGCATTGCCCTGGCCAGCTTTACCGTAGGCCTGGTGCt                           >  5:77999/1‑149 (MQ=255)                                                                                                         cATCGTACCGCTGACCATTCCGCTGACCGTTGGCCCCGGCACCATCGGTGCCCTGCTGGTGATGGGGGTGAGCCAGCCGCACTGGGATGAAAAACTGCTGGCCATCGTCAGCATTGCCCTGGCCAGCTTTACCGTAGGCCTGGTGCTg                          >  8:283747/1‑148 (MQ=255)                                                                                                         cATCGTACCGCTGACCATTCCGCTGACCGTTGGCCCCGGCACCATCGGTGCCCTGCTGGTGATGGGGGTGAGCCAGCCGCACTGGGATGAAAAACTGCTGGCCATCGTCAGCATTGCCCTGGCCAGCTTTACCGTAGGCCTGGTGCTg                          >  6:257282/1‑148 (MQ=255)                                                                                                         cATCGTACCGCTGACCATTCCGCTGACCGTTGGCCCCGGCACCATCGGTGCCCTGCTGGTGATGGGGGTGAGCCAGCCGCACTGGGATGAAAAACTGCTGGCCATCGTCAGCATTGCCCTGGCCAGCTTTACCGTAGGCCTGGTGCTGt                         <  7:283747/149‑1 (MQ=255)                                                                                                                 cGCTGACCATTCCGCTGACCGTTGGCCCCGGCACCATCGGTGCCCTGCTGGTGATGGGGGTGAGCCAGCCGCACTGGGATGAAAAACTGCTGGCCATCGTCAGCATTGCCCTGGCCAGCTTTACCGTAGGCCTGGTGCTGTATCTATCg                 >  5:209970/1‑149 (MQ=255)                                                                                                                  gCTGACCATTCCGCTGACCGTTGGCCCCGGCACCATCGGTGCCCTGCTGGTGATGGGGGTGAGCCAGCCGCACTGGGATGAAAAACTGCTGGCCATCGTCAGCATTGCCCTGGCCAGCTTTACCGTAGGCCTGGTGCTGTATCTATCg                 >  3:115256/1‑148 (MQ=255)                                                                                                                      aCCATTCCGCTGACCGTTGGCCCCGGCACCATCGGTGCCCTGCTGGTGATGGGGGTGAGCCAGCCGCACTggg                                                                                        <  8:171682/73‑1 (MQ=255)                                                                                                                      aCCATTCCGCTGACCGTTGGCCCCGGCACCATCGGTGCCCTGCTGGTGATGGGGGTGAGCCAGCCGCACTggg                                                                                        >  7:171682/1‑73 (MQ=255)                                                                                                                      aCCATTCCGCTGACCGTTGGCCCCGGCACCATCGGTGCCCTGCTGGTGATGGGGGTGAGCCAGCCGCACTGGTATGAAAAACTGCTGGCCATCGTCAGCATTGCCCTGGCCAGCTTTACCGTAGGCCTGGTGCTGTATCTATCGCACg             <  2:166215/148‑1 (MQ=255)                                                                                                                      aCCATTCCGCTGACCGTTGGCCCCGGCACCATCGGTGCCCTGCTGGTGATGGGGGTGAGCCAGCCGCACTGGGATGAAAAACTGCTGGCCATCGTCAGCATTGCCCTGGCCAGCTTTACCGTAg                                     <  6:119854/124‑1 (MQ=255)                                                                                                                      aCCATTCCGCTGACCGTTGGCCCCGGCACCATCGGTGCCCTGCTGGTGATGGGGGTGAGCCAGCCGCACTGGGATGAAAAACTGCTGGCCATCGTCAGCATTGCCCTGGCCAGCTTTACCGTAg                                     >  5:119854/1‑124 (MQ=255)                                                                                                                      aCCATTCCGCTGACCGTTGGCCCCGGCACCATCGGTGCCCTGCTGGTGATGGGGGTGAGCCAGCCGCACTGGGATGAAAAACTGCTGGCCATCGTCAGCATTGCCCTGGCCAGCTTTACCGTAGGCCTGGTGCTGTATCTATCGCACgg            >  1:186996/1‑149 (MQ=255)                                                                                                                        cATTCCGCTGACCGTTGGCCCCGGCACCATCGGTGCCCTGCTGGTGATGGGGGTGAGCCAGCCGCACTGGGATGAAAAACTGCTGGCCATCGTCAGCATTGCCCTGGCCAGCTTTACCGTAGGCCTGGTGCTGTATCTATCGCACGGTa          >  3:172195/1‑149 (MQ=255)                                                                                                                          ttCCGCTGACCGTTGGCCCCGGCACCATCGGTGCCCTGCTGGTGATGGGGGTGAGCCAGCCGCACTGGGATGAAAAACTGCTGGCCATCGTCAGCATTGCCATGGCCAGCTTTACAGTAGGCCTGGTGCTGTATATATCGCACGGTATc        >  8:33849/1‑149 (MQ=255)                                                                                                                          ttCCGCTGACCGTTGGCCCCGGCACCATCGGTGCCCTGCTGGTGATGGGGGTGAGCCAGCAGCACTGGGATGAAAAACTGCTGGCCATCGTCAGCATTGCCCTGGCCAGCTTTACCGTAGGCCTGGTGCTGTATCTATCGCACGGTATc        >  1:107079/1‑149 (MQ=255)                                                                                                                             cGCTGACCGTTGGCCCCGGCACCATCGGTGCCCTGCTGGTGATGGGGGTGAGCCAGCCGGACTGGGATGAAAAACTGCTGGCCATCGTCAGCATTGCCCTGGCCAGCTTTACCGTAGGCCTGGTGCTGTATCTATCGCACGGTATCGAg     <  7:33849/149‑1 (MQ=255)                                                                                                                             cGCTGACCGTTGGCCCCGGCACCATCGGTGCCCTGCTGGTGATGGGGGTGAGCCAGCCGCACTGGGATGAAAAACTGCTGGCCATCGTCAGCATTGCCCTGGCCAGCTTTACCGTAGGCCTGGTGCTGTATCTATCGCACGGTATCGAg     <  2:107079/149‑1 (MQ=255)                                                                                                                                  aCCGTTGGCCCCGGCACCATCGGTGCCCTGCTGGTGATGGGGGTGAGCCAGCCGCACTGGGATGAAAAACTGCTGGCCATCGTCAGCATTGCCCTGGCCAGCTTTACCGTAGGCCTGGTGCTGTATCTATCGCACGGTATCGAgcgc  <  6:54407/147‑1 (MQ=255)                                                                                                                                  aCCGTTGGCCCCGGCACCATCGGTGCCCTGCTGGTGATGGGGGTGAGCCAGCCGCACTGGGATGAAAAACTGCTGGCCATCGTCAGCATTGCCCTGGCCAGCTTTACCGTAGGCCTGGTGCTGTATCTATCGCACGGTATCGAgcgc  <  5:371141/147‑1 (MQ=255)                                                                                                                                         |                                                                                                                                            GATGCCTTCCGCATCGGTGCTGGCAGCGTGCTGTTCATTTCGGCCCTGGGCATGGCCCAGGGCAAGCCGGCGGTACAGGCAGACAACGTTCAGCAGGATGTGACCATCGTACCGCTGACCATTCCGCTGACCGTTGGCCCCGGCACCATCGGTGCCCTGCTGGTGATGGGGGTGAGCCAGCCGCACTGGGATGAAAAACTGCTGGCCATCGTCAGCATTGCCCTGGCCAGCTTTACCGTAGGCCTGGTGCTGTATCTATCGCACGGTATCGAGCGC  >  NC_002947/5489729‑5490004

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.