New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5513242 =	30 (0.510)	5 (0.110)	5/206	NT	20.9%	intergenic (+20/‑134)	urtD/urtE	ABC transporter ATP‑binding protein/ABC transporter ATP‑binding protein
	?	NC_002947	5513350 =	14 (0.300)					intergenic (+128/‑26)	urtD/urtE	ABC transporter ATP‑binding protein/ABC transporter ATP‑binding protein

CCGCCGTAGTACTGGTGCAGGGTGTCGATCTTGAGCATGTGAGAGTTCCTGAAAGGGATGCTGTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGGAACCGCCCCATGGCATTACGCCCACTGTAGGAACGGGGTTACCCGCGAAGAGGCCGGCACAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5513413‑5513242 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttacccgcgaagaggccggcacaggcACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGA‑‑TCGACACCCTGCAC‑CA‑GTACTACGGCGGCAGCCACATCCTGCGCGGCCTGTCCTTCGAAGCCAAGATCGGCGAAGTGACCTGCCTGCTGGGCCGCAACGGCGTGGGC  >  NC_002947/5513350‑5513492                                                                                                                                                                                                                                                                                                                                 CCGCCGTAGTACTGGTGCAGGGTGTCGATCTTGAGCATGTGAGAGTTCCTGAAAGGGATGCTGTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGGAACCGCCCCATGGCATTACGCCCACTGTAGGAACGGGGTTA                                                                                                                                                                            <  1:181096/149‑1          TACTGGTGCAGGGTGTCGATCTTGAGCATGTGAGAGTTCCTGAAAGGGATGCTGTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGGAACCGCCCCATGGCATTACGCCCACTGTAGGAACGGGGTTACCCGCG                                                                                                                                                                      >  8:265529/1‑146               GTGCAGGGTGTCGATCTTTAGCATGTGAGAGTTCCTGAAAGGGATGCTGTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGGAACCGCCCCATGGCATTACGCCCACTGTAGGAACGGGGTTACCCGCGAAGAGGC                                                                                                                                                               <  8:175077/148‑1               GTGCAGGGTGTCGATCTTGAGCATGTGAGAGTTCCTGAAAGGGATGCTGTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGGAACCGCCCCATGGCATTACGCCCACTGTAGGAACGGGGTTACCCGCGAAGAGGC                                                                                                                                                               <  7:265529/148‑1                                          tgtGTTCCTGAATGGTATAGTGTGCCGGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGGAACCGCCCCATGGCATTACGCCCACTGTAGGAACGGGGTTACCCGCTAAGAGGCCGGCACA                                                                                                                                                        <  6:306843/125‑1                                          AGAGTTCCTGAAAGGGATACTGTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGGACCCGCCCCATGGCATTACGCCCACTGTAGGAACGGGGTTACCCGCGAAGAGGCCGGCACA                                                                                                                                                        >  5:306843/1‑128                                                                                   GCGGGTAAACCCGCTCCTACGACGGGAACCGCCCCATGGCATTACGCCCACTGTAGGAACGGGGTTACCCGCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGA‑‑TCGACACCCTGCAC‑CA‑GTACTAC                                                                                      >  7:224869/1‑149                                                                                     GGGTAAACCCGCTCCTACGACGGGAACCGCCCCATGGCATTACGCCCACTGTAGGAACGGGGTTACCCGCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGA‑‑TCGACACCCTGCAC‑CA‑GTACTACGG                                                                                    >  7:143055/1‑149                                                                                          AACCCGCTCCTACGACGGGAACCGCCCCATGGCATTACGCCCACTGTAGGAACGGGGTTACCCGCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGA‑‑TCGACACCCTGCAC‑CA‑GTACTACGGCGGCA                                                                               <  8:224869/149‑1                                                                                                   CTACGACGGGAACCGCCCCATGGCATTACGCCCACTGTAGGAACGGGGTTACCCGCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGA‑‑TCGACACCCTGCAC‑CA‑GTACTACGGCGGCAGCCACATCC                                                                      >  4:114889/1‑149                                                                                                                         GCATTACGCCCACTGTAGGAACGGGGTTACCCGCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGA‑‑TCGACACCCTGCAC‑CA‑GTACTACGGCGGCAGCCACATCCTGCGCGGCCTGTCCTTCGAAG                                                 <  8:143055/148‑1                                                                                                                                                      CCCGCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGA‑‑TCGACACCCTGCAC‑CA‑GTACTACGGCGGCAGCCACATCCTGCGCGGCCTGTCCTTCGAAGCCAAGATCGGCGAAGTGACCTGCCTGCTGG                   <  2:181096/149‑1                                                                                                                                                       CCGCGTAGAGGCCGGCACAGGCACATCATCCCTTTGAGGAACTCTCACATGCTCAAGACTTCGTCACCCTGCACTTATGTACTACGGCGGCAGCCACATCCTGCGCGGCCTGTCCTTCGAAGCCAAGATCGGCGAAGTGACCTGCCTGC                      <  1:300408/149‑1                                                                                                                                                                       ACATGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGA‑‑TCGACACCCTGCAC‑CA‑GTACTACGGCGGCAGCCACATCCTGCGCGGCCTGTCCTTCGAAGCCAAGATCGGCGAAGTGACCTGCCTGCTGGGCCGCAACGGCGTGGGC  <  2:231355/149‑1                                                                                                                                                                                                                                                                                                                                 CCGCCGTAGTACTGGTGCAGGGTGTCGATCTTGAGCATGTGAGAGTTCCTGAAAGGGATGCTGTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGGAACCGCCCCATGGCATTACGCCCACTGTAGGAACGGGGTTACCCGCGAAGAGGCCGGCACAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5513413‑5513242 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttacccgcgaagaggccggcacaggcACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGA‑‑TCGACACCCTGCAC‑CA‑GTACTACGGCGGCAGCCACATCCTGCGCGGCCTGTCCTTCGAAGCCAAGATCGGCGAAGTGACCTGCCTGCTGGGCCGCAACGGCGTGGGC  >  NC_002947/5513350‑5513492

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.