New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5513242 =	30 (0.510)	5 (0.110)	5/206	NT	20.9%	intergenic (+20/‑134)	urtD/urtE	ABC transporter ATP‑binding protein/ABC transporter ATP‑binding protein
	?	NC_002947	5513350 =	14 (0.300)					intergenic (+128/‑26)	urtD/urtE	ABC transporter ATP‑binding protein/ABC transporter ATP‑binding protein

GACATGGGCTTCGTCGGCAGCATTGCCGACCATGTGACCGTGCTGCACCAGGGGAGTGTGCTGGC‑GGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTT‑CGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATC  >  NC_002947/5513094‑5513387                                                                                                                                                      |                                                                                                                                                   gACATGGGCTTCGTCGGCAGCATTGCCGACCATGTGACCGTCCTGCACCAGGGGAGTGTGCTGGC‑GGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGgcg                                                                                                                                                    >  1:8672/1‑149 (MQ=255)      gggCTTCGTCGGCAGCATTGCCGACCATGTGACCGTGCTGCACCAGGGGAGTGTGCTGGC‑GGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTTGCGCCtgt                                                                                                                                               >  6:247921/1‑149 (MQ=255)       gcccacgccgttgcggcccagcaggcaggtcacttcgccgatcttggcttcgaaggacaggccgcgcaggatgtggctgccgccgtagtactggtgcagggtgtcgatcttgagcatgtgagagttcctgaaagggatgctgtgcatgt                                                                                                                                               <  2:231355‑M1/6‑1 (MQ=255)         cTTCGTCGGCAGCATTGCCGACCATGTGACCGTGCTGCACCAGGGGAGTGTGCTGGC‑GGAAGGCTCGCTGGAGAAGGTGCAGGCAGATGAGAGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAAGTTTTTGCGCCTTTGcc                                                                                                                                            >  8:146444/1‑149 (MQ=255)           tcgtcgGCAGCATTGCCGACCATGTGACCGTGCTGCACCAGGGGAGTGTGCTGGC‑GGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCgg                                                                                                                                          >  2:340580/1‑149 (MQ=255)            cgtcgGCAGCATTGCCGACCATGTGACCGTGCTGCACCAGGGGAGTGTGCTGGC‑GGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCg                                                                                                                                           <  3:299153/147‑1 (MQ=255)               cgGCAGCATTGCCGACCATGTGACCGTGCTGCACCAGGGGAGTGTGCTGGC‑GGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCctc                                                                                                                                      >  1:248474/1‑149 (MQ=255)                  cagcaTTGCCGACCATGTGACCGTGCTGCACCAGGGGAGTGTGCTGGC‑GGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGGGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGGGCCGGCCTCTT‑c                                                                                                                                  <  7:146444/149‑1 (MQ=255)                      aTTGCCGAGCATGTGAGCGTGCTGCAGCAGGGGTGTGTGCTGGC‑GGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTT‑CGCgg                                                                                                                              <  2:8672/149‑1 (MQ=255)                       ttGCCGACCATGTGACCGTGCTGCACCAGGGGAGTGTGCTGGC‑GGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTT‑CGCggg                                                                                                                             <  6:109407/149‑1 (MQ=255)                       gcaggcaggtcacttcgccgatcttggcttcgaaggacaggccgcgcaggatgtggctgccgccgtagtacataagtgcagggtgacgaagtcttgagcatgtgagagttcctcaaagggatgatgtGCCTGTGCCGGCCTCTA‑CGCgg                                                                                                                              <  1:300408‑M1/22‑1 (MQ=255)                        ccagcaggcaggtcacttcgccgatcttggcttcgaaggacaggccgcgcaggatgtggctgccgccgtagtactggtgcagggtgtcgatcttgagcatgtgagagttcctgaaagggatgctgtGCCTGTGCCGGCCTCTT‑CGCggg                                                                                                                             <  2:181096‑M1/23‑1 (MQ=255)                            gACCATGTGACCGTGCTGCACCAGGGGAGTGTGCTGGC‑GGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCTGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTT‑CGCGGGTaaac                                                                                                                        >  4:255102/1‑147 (MQ=255)                             aCCATGTGACCGTGCTGCACCAGGGGAGTGTGCTGGC‑GGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTT‑CGCGGGTAAccc                                                                                                                       >  6:32050/1‑149 (MQ=255)                                aTGTGACCGTGCTGCACCAGGGGAGTGTGCTGGCAGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTT‑CGCGGGTAACCCCg                                                                                                                     >  1:48716/1‑149 (MQ=255)                                   tgACCGTGCTGCACCAGGGGAGTGTGCTGGC‑GGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTT‑CGCGGGTAACCCCGTTc                                                                                                                  <  8:253924/148‑1 (MQ=255)                                              cACCAGGGGAGTGTGCTGGC‑GGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTT‑CGCGGGTAACCCCGTTCCTACAGTggg                                                                                                        <  2:48716/147‑1 (MQ=255)                                              cACCAGGGGAGTGTGCTGGC‑GGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTT‑CGCGGGTAACCCCGTTCCTACAGTggg                                                                                                        <  2:248474/147‑1 (MQ=255)                                                 gaGGGGAGTGTGCTGGC‑GTAAGGCTCGGTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTT‑CGCGGGTAACCCCGTTCCTACAGTGGGCGTaa                                                                                                   <  5:61346/148‑1 (MQ=255)                                                   ggggAGTGTGCTGGC‑GGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTT‑CGCGGGTAACCCCGTTCCTACAGTGGGCGTAATg                                                                                                 >  7:209896/1‑149 (MQ=255)                                                      cttcgaaggacaggccgcgcaggatgtggctgccgccgtagtactggtgcagggtgtcgatcttgagcatgtgagagttcctgaaagggatgctgtGCCTGTGCCGGCCTCTT‑CGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGc                                                                                                <  8:143055‑M1/52‑1 (MQ=255)                                                         tgtgCTGGC‑GGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTT‑CGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATgg                                                                                           >  5:182309/1‑149 (MQ=255)                                                              tGGC‑GGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTT‑CGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCAt                                                                                             >  1:251577/1‑142 (MQ=255)                                                              tGGC‑GGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTT‑CGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCAt                                                                                             <  2:251577/142‑1 (MQ=255)                                                                gC‑GGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTATT‑AGCGGGTAAACCCCTTCCAACAGTGGGCGTAATGGCATGGGGCGGt                                                                                     >  8:163410/1‑148 (MQ=255)                                                                 c‑GGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTT‑CGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTc                                                                                   <  5:32050/149‑1 (MQ=255)                                                                        gCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTT‑CGCGGGTAACCCCGTTCCTACAGt                                                                                                           >  7:128476/1‑119 (MQ=255)                                                                        gCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTT‑CGCGGGTAACCCCGTTCCTACAGt                                                                                                           <  8:128476/119‑1 (MQ=255)                                                                           ggatgtggctgccgccgtagtactggtgcagggtgtcgatcttgagcatgtgagagttcctgaaagggatgctgtGCCTGTGCCGGCCTCTT‑CGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAg                                                                          >  4:114889‑M1/76‑149 (MQ=255)                                                                            gCTGGAGCAGGTGCAGGCAGATGAGCGGGGGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTT‑CGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTa                                                                           <  1:340580/147‑1 (MQ=255)                                                                                    tgccgccgtagtactggtgcagggtgtcgatcttgagcatgtgagagttcctgaaagggatgctgtGCCTGTGCCGGCCTCTT‑CGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGtt                                                                 <  8:224869‑M1/83‑1 (MQ=255)                                                                                    aGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTT‑CGCGGGTAACCCCGGTCCTACAGTGGGGGTAATGGCATGGGGCGGGTGCCGTCGGAGGAGCGGGtt                                                                 >  8:223356/1‑149 (MQ=39)                                                                                         ccgtagtactggtgcagggtgtcgatcttgagcatgtgagagttcctgaaagggatgctgtGCCTGTGCCGGCCTCTT‑CGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTAccc                                                            >  7:143055‑M1/62‑149 (MQ=255)                                                                                           gtagtactggtgcagggtgtcgatcttgagcatgtgagagttcctgaaagggatgctgtGCCTGTGCCGGCCTCTT‑CGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCcgc                                                          >  7:224869‑M1/60‑149 (MQ=255)                                                                                              agATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTT‑CGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGaa                                                       <  6:361873/149‑1 (MQ=255)                                                                                                     cGGGTGGGCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTT‑CGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCg                                                <  7:223356/149‑1 (MQ=255)                                                                                                      gggTGGTCGAGGTGTATCTGGGCCGCTGACCGTATTTCAATTTTTGGCGCCTGTGCCGGCCTCTT‑CGCGGGTAACCCCATTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCgg                                               <  5:247921/149‑1 (MQ=255)                                                                                                           gtCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTT‑CGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCggcacag                                          <  8:209896/149‑1 (MQ=255)                                                                                                                    tATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTACGCGGGTAACCCCGTTCCTAAAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCACAGc                                   >  1:90892/1‑148 (MQ=255)                                                                                                                                                    gcgcCTGTGCCGGCCTCTT‑CGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATc  <  6:182309/148‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                   GACATGGGCTTCGTCGGCAGCATTGCCGACCATGTGACCGTGCTGCACCAGGGGAGTGTGCTGGC‑GGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTT‑CGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATC  >  NC_002947/5513094‑5513387

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.