| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5513242 = | 30 (0.510) | 5 (0.110) | 5/206 | NT | 20.9% | intergenic (+20/‑134) | urtD/urtE | ABC transporter ATP‑binding protein/ABC transporter ATP‑binding protein |
| ? | NC_002947 | 5513350 = | 14 (0.300) | intergenic (+128/‑26) | urtD/urtE | ABC transporter ATP‑binding protein/ABC transporter ATP‑binding protein | |||||
TATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTT‑CGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGC‑CGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGA‑‑TCGACACCCTGCAC‑CA‑GTACTACGGCGGCAGCCACATCCTGCGCGGCCTGTCCTTCGAAGCCAAGATCGGCGAAGTGACCTGCCTGCTGGGCCGCAACGGCGTGGGCAAGACC > NC_002947/5513208‑5513498 | tATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTACGCGGGTAACCCCGTTCCTAAAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGC‑CGGCACAGGCACAGc > 1:90892/1‑148 (MQ=255) gcgcCTGTGCCGGCCTCTT‑CGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGC‑CGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGA‑‑Tc < 6:182309/148‑1 (MQ=255) TGTGCCGGCCTCTT‑CGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGGTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGC‑CGGCACAGGCACAGTATCCCTTTCAGGAActct > 5:306843‑M1/1‑128 (MQ=255) TGTGCCGGCCTCTT‑AGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGC‑CGGCACCGGCACACTATACCATTCAGgaacaca < 6:306843‑M1/128‑4 (MQ=255) GCCTCTT‑CGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGC‑CGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGA‑‑TCGACACCCTGCAc < 7:265529‑M1/148‑1 (MQ=255) GCCTCTT‑CGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGC‑CGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTAAAGA‑‑TCGACACCCTGCAc < 8:175077‑M1/148‑1 (MQ=255) CGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGC‑CGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGA‑‑TCGACACCCTGCAC‑CA‑Gta > 8:265529‑M1/1‑146 (MQ=255) gcgggtaaacccgctcctacgacgggaaccgccccatggcattacgcccactgtaggaacggggttacccgcgaagaggccggcacaggcACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGA‑‑TCGACACCCTGCAC‑CA‑Gtactac > 7:224869‑M2/91‑149 (MQ=255) gggtaaacccgctcctacgacgggaaccgccccatggcattacgcccactgtaggaacggggttacccgcgaagaggccggcacaggcACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGA‑‑TCGACACCCTGCAC‑CA‑GTACTAcgg > 7:143055‑M2/89‑149 (MQ=255) TAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGC‑CGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGA‑‑TCGACACCCTGCAC‑CA‑GTACTAcggcgg < 1:181096‑M1/149‑1 (MQ=255) aacccgctcctacgacgggaaccgccccatggcattacgcccactgtaggaacggggttacccgcgaagaggccggcacaggcACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGA‑‑TCGACACCCTGCAC‑CA‑GTACTACGGCGGCa < 8:224869‑M2/66‑1 (MQ=255) tACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGC‑CGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGA‑‑TCGACACCCTGCAC‑CA‑GTACTACGGCGGCAGCCACATCCt > 4:232028/1‑149 (MQ=255) tACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGC‑CGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGA‑‑TCGACACCCTGCAC‑CA‑GTACTACGGCGGCAGCCACATCCt > 5:144792/1‑149 (MQ=255) ctacgacgggaaccgccccatggcattacgcccactgtaggaacggggttacccgcgaagaggccggcacaggcACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGA‑‑TCGACACCCTGCAC‑CA‑GTACTACGGCGGCAGCCACATcc > 4:114889‑M2/75‑149 (MQ=255) cAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGC‑CGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGA‑‑TCGACACCCTGCAC‑CA‑GTACTACGGCGGCAGCCACATCCt < 6:144792/147‑1 (MQ=255) ggCTTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTAACCCGCGAAGAGGC‑CGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGA‑‑TCGACACCCTGCAC‑CA‑GTACTACGGCGGCAGCCACATCCTGCGCGGc < 5:322367/149‑1 (MQ=255) ggCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGC‑CGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGA‑‑TCGACACCCTGCAC‑CA‑GTACTACGGCGGCAGCCACATCCTGCGCGGc < 3:232028/149‑1 (MQ=255) ggCGTAAGGCCAGGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGC‑CGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGA‑‑TCGACACCCTGCAC‑CA‑GTACTACGGCGGCAGCCACATCCTGCGCGGc < 7:163410/149‑1 (MQ=255) gggCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGC‑CGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGA‑‑TCGACACCCTGCAC‑CA‑GTACTACggcggc < 7:111384/117‑1 (MQ=255) gggCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGC‑CGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGA‑‑TCGACACCCTGCAC‑CA‑GTACTACggcggc > 8:111384/1‑117 (MQ=255) gcattacgcccactgtaggaacggggttacccgcgaagaggccggcacaggcACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGA‑‑TCGACACCCTGCAC‑CA‑GTACTACGGCGGCAGCCACATCCTGCGCGGCCTGTCCTTCGAAg < 8:143055‑M2/96‑1 (MQ=255) ggTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGC‑CGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGA‑‑TCGACACCCTGCAC‑CA‑GTACTACGGCGGCAGCCACATCCTGCGCGGCCTGTCCTTCGAAGcc > 2:300408/1‑146 (MQ=255) ccGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCACGGCACAGGCACAGCATCACTTTCAGGAACTCTCCCATGCTCAACA‑‑TCGACACCATGCCC‑CA‑GTACTACGGCGGCAGCCACAGCCTGCGCGCACTGTCCTGCGAAGCCAACATCg > 1:231355/1‑149 (MQ=37) gtcgtAGGAGCGGGTTTACCCGCGAAGAGGC‑CGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGA‑‑TCGACACCCTGCAC‑CA‑GTACTACGGCGGCAGCCACATCCTGCGCGGCCTGTCCTTCGAAGCCAAGATCGGc > 5:98776/1‑148 (MQ=255) taGCGGGTTTACCCGCGAAGAGGC‑CGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGA‑‑TCGACACCCTGCAC‑CA‑GTACTACGGCGGCAGCCACATCCTGCGCGGCCTGTCCTTCGAAGCCAAGATCGGCGAAGTGAc < 3:126393/148‑1 (MQ=255) gCGGGTTTACCCGCGAAGAGGC‑CGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGA‑‑TCGACACCCTGCAC‑CA‑GTACTACGGCGGCAGCCACATCCTGCGCGGCCTGTCCTTCGAAGCCAAGATCGGCGAAGTGAc > 4:126393/1‑147 (MQ=255) gTTTACCCGCGAAGAGGC‑CGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGA‑‑TCGACACCCTGCAC‑CA‑GTACTACGGCGGCAGCCACATCCTGCGCGGCCTGTCCTTCGAAGCCAAGATCGGCGAAGTGAcctgcct > 7:172692/1‑149 (MQ=255) cccgcgaagaggccggcacaggcACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGA‑‑TCGACACCCTGCAC‑CA‑GTACTACGGCGGCAGCCACATCCTGCGCGGCCTGTCCTTCGAAGCCAAGATCGGCGAAGTGACCTGCCTGCTgg < 2:181096‑M2/126‑1 (MQ=255) ccgcgtagaggccggcacaggcACATCATCCCTTTGAGGAACTCTCACATGCTCAAGACTTCGTCACCCTGCACTTATGTACTACGGCGGCAGCCACATCCTGCGCGGCCTGTCCTTCGAAGCCAAGATCGGCGAAGTGACctgcctgc < 1:300408‑M2/127‑1 (MQ=255) acatgcACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGA‑‑TCGACACCCTGCAC‑CA‑GTACTACGGCGGCAGCCACATCCTGCGCGGCCTGTCCTTCGAAGCCAAGATCGGCGAAGTGACCTGCCTGCTGGGCCGCAACGGCGTGGGc < 2:231355‑M2/143‑1 (MQ=255) acagCATCCCTTTCAGGAACTCTCACATGCTCAAGA‑‑TCGACACCCTGCAC‑CA‑GTACTACGGCGGCAGCCACATCCTGCGCGGCCTGTCCTTCGAAGCCAAGATCGGCGAAGTGACCTGCCTGCTGGGCCGCAACGGCGTGGGCAAGacc < 8:172692/149‑1 (MQ=255) acagCATCCCTTTCAGGAACTCTCACATGCTCAAGA‑‑TCGACACCCTGCAC‑CA‑GTACTACGGCGGCAGCCACATCCTGCGCGGCCTGTCCTTCGAAGCCAAGATCGGCGAAGTGACCTGCCTGCTGGGCCGCAACGGCGTGGGCAAGac > 7:263058/1‑148 (MQ=255) | TATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTT‑CGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGC‑CGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGA‑‑TCGACACCCTGCAC‑CA‑GTACTACGGCGGCAGCCACATCCTGCGCGGCCTGTCCTTCGAAGCCAAGATCGGCGAAGTGACCTGCCTGCTGGGCCGCAACGGCGTGGGCAAGACC > NC_002947/5513208‑5513498 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |