| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5534108 = | 44 (0.750) | 3 (0.050) | 3/248 | NT | 7.0% | coding (367/1137 nt) | PP_4867 | BraC‑like branched‑chain amino acid ABC transporter substrate‑binding protein |
| ? | NC_002947 | 5534150 = | 37 (0.650) | coding (325/1137 nt) | PP_4867 | BraC‑like branched‑chain amino acid ABC transporter substrate‑binding protein | |||||
AAGGCGATGACGCCTGTGAACCGAAGCAAGCCGTGGCCGTGGCCAACCGCCTGGTCGATCAGGACAAGGTGATTGGCGTGGTGGGCCACTTCTGTTCCTCCAACACGATCCCGGCGTCCGAGGTATATGACGAGGCGGGCGTGATCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5534254‑5534108‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatcgTGTTGGAGGAACAGAAGTGGCCCACCACGCCAATCACCTTGTCCTGATCGACCAGGCGGTTGGCCACGGCCACGGCTTGCTTCGGTTCACAGGCGTCATCGCCTTTGACCAGGACGATTTTCTCGCCATTCACGCCACCAGCGG > NC_002947/5534150‑5534293 AAGGCGATGACGCCTGTGAACCGAAGCAAGCCGTGGCCGTGGCCAACCGCCTGGTCGAACAGGACAAGGTGATTGGCGTGGAGGGCCACTTCTGATCCTCCAACACGAACCCGGCGTCGGAGGTATATGACGAGGCGGGCGTGgtggc > 7:235304/1‑143 TCCAACACGATCCCGGCGTCCGAGGTGTATGACGAGGCGGGCGTGATCGTGTTGGAGGAACAGAAGTGGCCCACCACGCCAATCACCTTGTCCTGATCGACCAGGCGGTTGGCCACGGCCACGGCTTGCTTCGGTTCACAGGCGTCATC > 4:290980/1‑149 AACACGATCCCGGCGTCCGAGGTATATGACGAGGCGGGCGTGATCGTGTTGGAGGAACAGAAGTGGCCCACCACGCCAATCACCTTGTCCTGATCGACCAGGCGGTTGGCCACGGCCACGGCTTGCTTCGG < 1:140601/131‑1 AACACGATCCCGGCGTCCGAGGTATATGACGAGGCGGGCGTGATCGTGTTGGAGGAACAGAAGTGGCCCACCACGCCAATCACCTTGTCCTGATCGACCAGGCGGTTGGCCACGGCCACGGCTTGCTTCGG > 2:140601/1‑131 GATCGTGTTGGAGGAACAGAAGTGGCCCACCACGCCAATCACCTTGTCCTGATCGACCAGGCGGTTGGCCACGGCCACGGCTTGCTTCGGTTCACAGGCGTCATCGCCTTTGACCAGGACGATTTTCTCGCCATTCACGCCACCAGCGG < 5:29264/149‑1 AAGGCGATGACGCCTGTGAACCGAAGCAAGCCGTGGCCGTGGCCAACCGCCTGGTCGATCAGGACAAGGTGATTGGCGTGGTGGGCCACTTCTGTTCCTCCAACACGATCCCGGCGTCCGAGGTATATGACGAGGCGGGCGTGATCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5534254‑5534108‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatcgTGTTGGAGGAACAGAAGTGGCCCACCACGCCAATCACCTTGTCCTGATCGACCAGGCGGTTGGCCACGGCCACGGCTTGCTTCGGTTCACAGGCGTCATCGCCTTTGACCAGGACGATTTTCTCGCCATTCACGCCACCAGCGG > NC_002947/5534150‑5534293 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |