New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5534108 =	44 (0.750)	3 (0.050)	3/248	NT	7.0%	coding (367/1137 nt)	PP_4867	BraC‑like branched‑chain amino acid ABC transporter substrate‑binding protein
	?	NC_002947	5534150 =	37 (0.650)					coding (325/1137 nt)	PP_4867	BraC‑like branched‑chain amino acid ABC transporter substrate‑binding protein

ACACCGCAACCTTCTTGCCCTTGAGCACGTCGACGATGTAGTCGCCAGCGACGATACCCTGCTGGTCGTCACGGCCGCACATGCGGAACATGGCACTCAGGCCGCGCTCAGTGACCTGTGGGTTGGTGGAGCCTGGGGTGATGGCGATCACGCCCGCCTCGTCATATACCTCGGACGCCGGGATCGTGTTGGAGGAACAGAAGTGGCCCACCACGCCAATCACCTTGTCCTGATCGACCAGGCGGTTGGCCACGGCCACGGCTTGCTTCGGTTCACAGGCGTCATCGCCTT  >  NC_002947/5533964‑5534254                                                                                                                                                 |                                                                                                                                                   ccgctggtggcgtgaatggcgagaaaatcgtcctggtcaaaggcgatgacgcctgtgaaccgaagcaagccgtggccgtggccaaccgcctggtcgatcaggacaaggtgattggcgtggtgggccacttctgttcctccaacaCGATc                                                                                                                                                <  5:29264‑M1/5‑1 (MQ=255) acacCGCAACCTTCTTGCCCTTGAGCACGTCGACGATGTAGTCGCCAGCGACGATACCCTGCTGGTCGTCACGGCCGCACATGCGGAACATGGCACTCAGGCCGCGCTCAGTGACCTGTGGGTTGGTGGAGCCTGGGGTGATGGCGAt                                                                                                                                                 >  5:38284/1‑148 (MQ=255)  cacaGCAACCATCATGCCCTTCAGCAAGTCGAAGATGTACTCGCCAGCGACGATACCATGCTAGTCGTCACGGCCGCACATGCGGAACATGGCACTCAGCCCGCGCTCAGTGACATGTGGCTAGGTGGAGACTGTCGTCATGGCGATCa                                                                                                                                               >  4:187487/1‑149 (MQ=255)     cGCAACCTTCTTGCCCTTGAGCACGTCGACGATGTAGTCGCCAGCGACGATACCCTGCTGGTCGTCACGGCCGCACATGCGGAACATGGCACTCAGGCCGCGCTCAGTGACCTGTGGGTTGGTGGAGCCTGGGGTGATGGCGATCAcgc                                                                                                                                            >  4:118530/1‑149 (MQ=255)      gCAACCTTCTTGCCCTTGAGCACGTCGACGATGTAGTCGCCAGCGACGATACCCTGCTCGTCGTCACGGCCGCACATGCGGAACATGGCACTCAGGCCGCGCTCAGTGACCTGTGGGTTGGTGGAGCCTGGGGTGATGGCGATCAcgcc                                                                                                                                           >  8:250700/1‑149 (MQ=255)                   ccTTGAGCACGTCGACGATGTAGTCGCCAGCGACGATGCCCTGCTGGTCGTCACGGCCGCACATGCGGAACATGGCACTCAGGCCGCGCTCAGTGACCTGTGGGTTGGTGGAGCCTGGGGTGATGGCGATCACGCCCGCCTCGTCatat                                                                                                                              <  6:325634/149‑1 (MQ=255)                   ccTTGAGCACGTCGACGATGTAGTCGCCAGCGACGATACCCTGCTGGTCGTGACGGGCGCACATGCGGAACATGGCACTCAGGCCGCGCTCAGTGACCTGTGGGTTGGTGGAGCCTGGGGTGATGGCGATCACGCCCGCCTCGTCata                                                                                                                               <  3:187487/148‑1 (MQ=255)                   ccTTGAGCACGTCGACGATGTAGTCGCCAGCGACGATACCCTGCTGGTCGTCACGGCCGCACATGCGGAACATGGCACTCAGGCCGCGCTCAGTGACCTGTGGGTTGGTGGAGCCTGGGGTGATGGCGATCACGCCCGCCTCGTCata                                                                                                                               >  6:244373/1‑148 (MQ=255)                    cTTGAGCACGTCGACGATGTAGTCGCCAGCGACGATACCCTGCTGGTCGTCACGGCCGCACATGCGGAACATGGCACTCAGGCCGCGCTCAGTGACCTGTGGGTTGGTGGAGCCTGGGGTGATGGCGATCACGCCCGCCTCGTCAtata                                                                                                                             >  5:181793/1‑149 (MQ=255)                           aCGTCGACGATGTTGTCGCCAGCGACGATACCCTGCTGGTCGTCACGGCCGCACATGCGGAACATGGCACTCAGGCCGCGCTCAGTGACCTGTGGGTTGGTGGAGCCTGGGGTGATGGCGATCACGCCCGCCTCGTCATATACCTCGGa                                                                                                                      <  3:9977/149‑1 (MQ=255)                           aCGTCGACGATGTAGTCGCCAGCGACGATACCCTGCTGGTCGTCACGGCCGCACATGCGGAACATGGCACTCAGGCCGCGCTCAGTGACCTGTGGGTTGGTGGAGCCTGGGGTGATGGCGATCACGCCCGCCTCGTCATATACCTCGGa                                                                                                                      >  5:354014/1‑149 (MQ=255)                             gTCGACGATGTAGTCGCCAGCGACGATACCCTGCTGGTCGTCACGGCCGCACATGCGGAACATGGCACTCAGGCCGCGCTCAGTGACCTGAGGGTTGGTGGAGCATGGCGTGATGGCGATCACGCACGCCTCGTCATATACCTAGGACg                                                                                                                    >  4:75387/1‑149 (MQ=255)                              tCGACGATGTAGTCGCCAGCGACGATACCCTGCTGGTCGTCACGGCCGCACATGCGGAACATGGCACTCAGGCCGCGCTCAGTGACCTGTGGGTTGGTGGAGCCTGGGGTGATGGCGATCACGCCCGCCTCGTCATATACCTCGGACGc                                                                                                                   >  4:175071/1‑149 (MQ=255)                                gacgaTGTAGTCGCCAGCGACGATACCCTGCTGGTCGTCACGGCCGCACATGCGGAACATGGCACTCAGGCCGCGCTCAGTGACCTGTGGGTTGGTGGAGCCTGGGGTGATGGCGATCACGCCCGCCTCGTCATATACCTCGGACGCCg                                                                                                                 >  7:14963/1‑149 (MQ=255)                                      gTAGTCGCCAGCGACGATACCCTGCTGGTCGTCACGGCCGCACATGCGGAACATGGCACTCAGGCCGCGCTCAGTGACCTGTGGGTTGGTGGAGCCTGGGGTGATGGCGATCACGCCCGCCTCATCATATACCTCGGACGCCGGGATc                                                                                                            <  6:38284/148‑1 (MQ=255)                                        aGTCGCCAGCGACGATACCCTGCTGGTCGTCACGGCCGCACATGCGGAACATGGCACTCAGGCCGCGCTCAGTGACCTGTGGGTTGGTGGAGCCTGGGGTGATGGCGATCACGCCCGCCTCGTCATATACCTCGGACGCCGGGATCgtg                                                                                                         >  4:335177/1‑149 (MQ=255)                                         gTCGCCAGCGACGATACCCTGCTGGTCGTCACGGCCGCACATGCGGAACATGGCACTCAGGCCGCGCTCAGTGACCTGTGGGTTGGTGGAGCCTGGGGTGATGGCGATCACGCCCGCCTCGTCATATACCTCGGACGCCGGGATCgtgt                                                                                                        <  3:335177/149‑1 (MQ=255)                                         gTCGCCAGCGACGATACCCTGCTGGTCGTCACGGCCGCACATGCGGAACATGGCACTCAGGCCGCGCTCAGTGACCTGTGGGTTGGTGGAGCCTGGGGTGATGGCGATCACGCCCGCCTCGTCATATACCTCGGACGCCGGGATCgtgt                                                                                                        <  3:118530/149‑1 (MQ=255)                                          tCGCCAGCGACGATACCCTGCTGGTCGTCACGGCCGCACATGCGGAACATGGCACTCAGGCCGCGCTCAGTGACCTGTGGGTTGGTGGAGCCTGGGGTGATGGCGATCACGCCCGCCTCGTCATATACCTCGGACGCCGGGATCGTGtt                                                                                                       <  6:354014/149‑1 (MQ=255)                                             gatgacgcctgtgaaccgaagcaagccgtggccgtggccaaccgcctggtcgatcaggacaaggtgattggcgtggtgggccacttctgttcctccaacaCGATCACGCCCGCCTCGTCATACACCTCGGACGCCGGGATCGTGTTgga                                                                                                    >  4:290980‑M1/101‑149 (MQ=255)                                             cgaGCGACGATACCCTGCTGGTCGTCACGGCCGCACATGCGGAACATGGCACTCAGGCCGCGCTCAGTGACCTGTGGGTTGGTGGAGCCTGGGGTGATGGCGATCACGCCCGCCTCGTCATATACCTCGGACGCCGGGATCGTGTTgga                                                                                                    <  3:75387/147‑1 (MQ=255)                                              cAGCGACGATACCCTGCTGGTCGTCACGGCCGCACATGCGGAACATGGCACTCAGGCCGCGCTCAGTGACCTGTGGGTTGGTGGAGCCTGGGGTGATGGCGATCACGCCCGCCTCGTCATATACCTCGGACGCCGGGATCGTGTTggag                                                                                                   <  3:175071/149‑1 (MQ=255)                                              cAGCGACGATACCCTGCTGGTCGTCACGGCCGCACATGCGGAACATGGCACTCAGGCCGCGCTCAGTGACCTGTGGGTTGGTGGAGCCTGGGGTGATGGCGATCACGCCCGCCTCGTCATATACCTCGGACGCCGGGATCGTGTTggag                                                                                                   <  5:244373/149‑1 (MQ=255)                                                  gacgaTACCCTGCTGGTCGTCACGGCCGCACATGCGGAACATGGCACTCAGGCCGCGCTCAGTGACCTGTGGGTTGGTGGAGCCTGGGGTGATGGCGATCACGCCCGCCTCGTCATATACCTCGGACGCCGGGATCGTGTTGGAGGAAc                                                                                               <  7:250700/149‑1 (MQ=255)                                                     gaTACCCTGCTGGTCGTCACGGCCGCACATGCGGAACATGGCACTCAGGCCGCGCTCAGTGACCTGTGGGTTGGTGGAGCCTGGGGTGATGGCGATCACGCCCGCCTCGTCATATACCTCGGACGCCGGGATCGTGTTGGAGGAACAg                                                                                             >  2:110155/1‑148 (MQ=255)                                                          ccTGCTGGTCGTCACGGCCGCACATGCGGAACATGGCACTCAGGCCGCGCTCAGTGACCTGTGGGTTGGTGGAGCCTGGGGTGATGGCGATCACGCCCGCCTCGTCATATACCTCGGACGCCGGGATCGTGTTGGAGGAACAGAAGTgg                                                                                       >  5:141540/1‑149 (MQ=255)                                                          ccTGCTGGTCGTCACGGCCGCACATGCGGAACATGGCACTCAGGCCGCGCTCAGTGACCTGTGGGTTGGTGGAGCCTGGGGTGATGGCGATCACGCCCGCCTCGTCATATACCTCGGACGCCGGGATCGTGGTGGAGGAACAGAAGTgg                                                                                       >  4:286112/1‑149 (MQ=255)                                                           ctgctgGTCGTCACGGCCGCACATGCGGAACATGGCACTCAGGCCGCGCTCAGTGACCTGTGGGTTGGTGGAGCCTGGGGTGATGGCGATCACGCCCGCCTCGTCATATACCTCGGACGCCGGGATCGTGTTGGAGGAACAGAAGTGGc                                                                                      >  7:211777/1‑149 (MQ=255)                                                            ccgaagcaagccgtggccgtggccaaccgcctggtcgatcaggacaaggtgattggcgtggtgggccacttctgttcctccaacaCGATCACGCCCGCCTCGTCATATACCTCGGACGCCGGGATCGTGtt                                                                                                       <  1:140601‑M1/46‑1 (MQ=255)                                                            ccgaagcaagccgtggccgtggccaaccgcctggtcgatcaggacaaggtgattggcgtggtgggccacttctgttcctccaacaCGATCACGCCCGCCTCGTCATATACCTCGGACGCCGGGATCGTGtt                                                                                                       >  2:140601‑M1/86‑131 (MQ=255)                                                                  tcgtcACGGCCGCACATGCGGAACATGGCAATCAGGCCGCGATCAGTGAGCTGTGGGTTGGTGGAGCCTGGGGTGATGGCGATCACCCCCGCCTCGTCATATACGTCGGACGCCGGGATCGTGTTGGAGGAACAGAAGTGGCCcaccac                                                                               >  8:235304/1‑149 (MQ=255)                                                                    gtcACGGCCGCACATGCGGAACATGGCACTCAGGCCGCGCTCAGTGACCTGTGGGTTGGTGGAGCCTGGGGTGATGGCGATCACGCCCGCCTCGTCATATACCTCGGACGCCGGGATCGTGTTggag                                                                                                   >  8:26651/1‑127 (MQ=255)                                                                    gtcACGGCCGCACATGCGGAACATGGCACTCAGGCCGCGCTCAGTGACCTGTGGGTTGGTGGAGCCTGGGGTGATGGCGATCACGCCCGCCTCGTCATATACCTCGGACGCCGGGATCGTGTTggag                                                                                                   <  7:26651/127‑1 (MQ=255)                                                                    gtcACGGCCGCACATGCGGAACATGGCACTCAGGCCGCGCTCAGTGACCTGTGGGTTGGTGGAGCCTGGGGTGATGGCGATCACGCCCGCCTCGTCATATACCTCGGACGCCGGGATCGTGTTGGAGGAACAGAAGTGGCCCACCACGc                                                                             <  5:191283/149‑1 (MQ=255)                                                                    gtcACGGCCGCACATGCGGAACATGGCACTCAGGCCGCGCTCAGTGACCTGTGGGTTGGGGGAGCCTGGGGTGATGGCGATCACGCCCGCCTCGTCATATACCTCCGACGCCGGGATCGTGTTGGAGGAACAGATGTGGCCCACCACg                                                                              <  8:114893/148‑1 (MQ=255)                                                                       aCGGCCGCACATGCGGAACATGGCACTCAGGCCGCGCTCAGTGACCTGTGGGTTGGTGGAGCCTGGGGTGATGGCGATCACGCCCGCCTCGTCATATACCTCGGACGCCGGGATCGTGTTgga                                                                                                    <  8:58439/123‑1 (MQ=255)                                                                       aCGGCCGCACATGCGGAACATGGCACTCAGGCCGCGCTCAGTGACCTGTGGGTTGGTGGAGCCTGGGGTGATGGCGATCACGCCCGCCTCGTCATATACCTCGGACGCCGGGATCGTGTTgga                                                                                                    >  7:58439/1‑123 (MQ=255)                                                                       aCGGCCGCACATGCGGAACATGGCACTCAGGCCGCGCTCAGTGACCTGTGGGTTGGTGGAGCCTGGGGTGATGGCGATCACGCCCGCCTCGTCATATACCTCGGACGCCGGGATCGTGTTGGAGGAACAGAAGTGGCCCACCACGCCaa                                                                          >  8:167446/1‑149 (MQ=255)                                                                            cGCACATGCGGAACATGGCACTCAGGCCGCGCTCAGTGACCTGTGGGTTGGTGGAGCCTGGGGTGATGGCGATCACGCCCGCCTCGTCATATACCTCGGACGCCGGGATCGTGTTGGAGGAACAGAAGTGGCCCACCACGCCAATCAcc                                                                     >  5:283006/1‑149 (MQ=255)                                                                             gCACATGCGGAACATGGCACTCAGGCCGCGCTCAGTGACCTGTGGGTTGGTGGAGCCTGGGGTGATGGCGATCACGCCCGCCTCGTCATATACCTCGGACGCCGGGATCGTGTTGGAGGAACAGAAGTGGCCCACCACGCCAATCACCt                                                                    >  6:29264/1‑149 (MQ=255)                                                                                     ggAACATGGCACTCAGGCCGCGCTCAGTGACCTGTGGGTTGGTGGAGCCTGGGGTGATGGCGATCACGCCCGCCTCGTCATATACCTCGGACGCCGGGATCGTGTTGGAGGAACAGAAGTGGCCCACCACGCCAATCACCTTGTCCTGa                                                            <  1:110155/149‑1 (MQ=255)                                                                                      gAACATGGCACTCAGGCCGCGCTCAGTGACCTGTGGGTTGGTGGAGCCTGGGGTGATGGCGATCACGCCCGCCTCGTCATATACCTCGGACGCCGGGATCGTGTTgg                                                                                                     >  1:330487/1‑107 (MQ=255)                                                                                      gAACATGGCACTCAGGCCGCGCTCAGTGACCTGTGGGTTGGTGGAGCCTGGGGTGATGGCGATCACGCCCGCCTCGTCATATACCTCGGACGCCGGGATCGTGTTgg                                                                                                     <  2:330487/107‑1 (MQ=255)                                                                                                   aGGCCGCGCTCAGTGACCTGTGGGTTGGTGGAGCCTGGGGTGATGGCGATCACGCCCGCCTCGTCATATACCTCGGACGCCGGGATCGTGTTGGAGGAACAGAAGTGGCCCACCACGCCAATCACCTTGTCCTGATCGACCAGGCgg                                                <  6:141540/147‑1 (MQ=255)                                                                                                          gcTCAGTGACCTGTGGGTTGGTGGAGCCTGGGGTGATGGCGATCACGCCCGCCTCGTCATATACCTCGGACGCCGGGATCGTGTTGGAGGAACAGAAGTGGCCCACCACGCCAATCACCTTGTCCTGATCGACCAGGCGGTTggccacg                                       >  8:164923/1‑149 (MQ=255)                                                                                                                     tgtgGGTTGGTGGAGCCTGGGGTGATGGCGATCACGCCCGCCTCGTCATATACCTCGTACGCCGGGATCGTGTTGGAGGAACAGAAGTGGCCCACCACGCCAAACACCTTGTCCTGATCGACCAGGCGGTTGGCCACGGCCACGgcttc                            >  5:139674/1‑148 (MQ=255)                                                                                                                       tgGGTTGGTGGAGCCTGGGGTGATGGCGATCACGCCCGCCTCGTCATATACCTCGGACGCCGGGATCGTGTTGGAGGAACAGAAGTGGCCCACCACGCCAATCACCTTGTCCTGATCGACCAGGCGGTTGGCCACGGCCACGgcttgct                          >  1:74260/1‑149 (MQ=255)                                                                                                                             ggtggAGCCTGGGGTGATGGCGATCACGCCCGCCTCGTCATATACCTCGGACGCCGGGATCGTGTTGGAGGAACAGAAGTGGCCCACCACGCCAATCACCTTGTCCTGATCGACCAGGCGGTTGGCCACGGCCACGGCTTGCTTCGGt                     <  8:14963/148‑1 (MQ=255)                                                                                                                                      tGGGGTGATGGCGATCACGCCCGCCTCGTCATATACCTCGGACGCCGGGATCGTGTTGGAGGAACAGAAGTGGCCCACCACGCCAATCACCTTGTCCTGATCGACCAGGCGGTTGGCCACGGCCACGGCTTGCTTCGGTTCACAGGCg            >  7:274287/1‑148 (MQ=255)                                                                                                                                               ggCGATCACGCCCGCCTCGTCATATACCTCGGACGCCGGGATCGTGTTGGAGGAACAGAAGTGGCCCACCACGCCAATCACCTTGTCCTGATCGACCAGGCGGTTGGCCACGGCCACGGCTTGCTTCGGTTCACAGGCGTCATCGCCtt  >  4:256144/1‑149 (MQ=255)                                                                                                                                                gCGATCACGCCCGCCTCGTCATATACCTCGGACGCCGGGATCGTGTTGGAGGAACAGAAGTGGCCCACCACGCCAATCACCTTGTCCTGATCGACCAGGCGGTTGGCCACGGCCACGGCTTGCTTCGGTTCACAGGCGTCATCGCCtt  <  7:167446/148‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                                   ACACCGCAACCTTCTTGCCCTTGAGCACGTCGACGATGTAGTCGCCAGCGACGATACCCTGCTGGTCGTCACGGCCGCACATGCGGAACATGGCACTCAGGCCGCGCTCAGTGACCTGTGGGTTGGTGGAGCCTGGGGTGATGGCGATCACGCCCGCCTCGTCATATACCTCGGACGCCGGGATCGTGTTGGAGGAACAGAAGTGGCCCACCACGCCAATCACCTTGTCCTGATCGACCAGGCGGTTGGCCACGGCCACGGCTTGCTTCGGTTCACAGGCGTCATCGCCTT  >  NC_002947/5533964‑5534254

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.