New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5534108 =	44 (0.750)	3 (0.050)	3/248	NT	7.0%	coding (367/1137 nt)	PP_4867	BraC‑like branched‑chain amino acid ABC transporter substrate‑binding protein
	?	NC_002947	5534150 =	37 (0.650)					coding (325/1137 nt)	PP_4867	BraC‑like branched‑chain amino acid ABC transporter substrate‑binding protein

AGTCGCCAGCGACGATACCCTGCTGGTCGTCACGGCCGCACATGCGGAACATGGCACTCAGGCCGCGCTCAGTGACCTGTGGGTTGGTGGAGCCTGGGGTGATGGCGATCACGCCCGCCTCGTCATATACCTCGGACGCCGGGATCGTGTTGGAGGAACAGAAGTGGCCCACCACGCCAATCACCTTGTCCTGATCGACCAGGCGGTTGGCCACGGCCACGGCTTGCTTCGGTTCACAGGCGTCATCGCCTTTGACCAGGACGATTTTCTCGCCATTCACGCCACCAGCGG  >  NC_002947/5534003‑5534293                                                                                                                                                    |                                                                                                                                                aGTCGCCAGCGACGATACCCTGCTGGTCGTCACGGCCGCACATGCGGAACATGGCACTCAGGCCGCGCTCAGTGACCTGTGGGTTGGTGGAGCCTGGGGTGATGGCGATCACGCCCGCCTCGTCATATACCTCGGACGCCGGGATCgtg                                                                                                                                                >  4:335177/1‑149 (MQ=255)  gTCGCCAGCGACGATACCCTGCTGGTCGTCACGGCCGCACATGCGGAACATGGCACTCAGGCCGCGCTCAGTGACCTGTGGGTTGGTGGAGCCTGGGGTGATGGCGATCACGCCCGCCTCGTCATATACCTCGGACGCCGGGATCgtgt                                                                                                                                               <  3:335177/149‑1 (MQ=255)  gTCGCCAGCGACGATACCCTGCTGGTCGTCACGGCCGCACATGCGGAACATGGCACTCAGGCCGCGCTCAGTGACCTGTGGGTTGGTGGAGCCTGGGGTGATGGCGATCACGCCCGCCTCGTCATATACCTCGGACGCCGGGATCgtgt                                                                                                                                               <  3:118530/149‑1 (MQ=255)   tCGCCAGCGACGATACCCTGCTGGTCGTCACGGCCGCACATGCGGAACATGGCACTCAGGCCGCGCTCAGTGACCTGTGGGTTGGTGGAGCCTGGGGTGATGGCGATCACGCCCGCCTCGTCATATACCTCGGACGCCGGGATCGTGtt                                                                                                                                              <  6:354014/149‑1 (MQ=255)      gatgacgcctgtgaaccgaagcaagccgtggccgtggccaaccgcctggtcgatcaggacaaggtgattggcgtggtgggccacttctgttcctccaacaCGATCACGCCCGCCTCGTCATACACCTCGGACGCCGGGATCGTGTTgga                                                                                                                                           >  4:290980‑M1/101‑149 (MQ=255)      cgaGCGACGATACCCTGCTGGTCGTCACGGCCGCACATGCGGAACATGGCACTCAGGCCGCGCTCAGTGACCTGTGGGTTGGTGGAGCCTGGGGTGATGGCGATCACGCCCGCCTCGTCATATACCTCGGACGCCGGGATCGTGTTgga                                                                                                                                           <  3:75387/147‑1 (MQ=255)       cAGCGACGATACCCTGCTGGTCGTCACGGCCGCACATGCGGAACATGGCACTCAGGCCGCGCTCAGTGACCTGTGGGTTGGTGGAGCCTGGGGTGATGGCGATCACGCCCGCCTCGTCATATACCTCGGACGCCGGGATCGTGTTggag                                                                                                                                          <  5:244373/149‑1 (MQ=255)       cAGCGACGATACCCTGCTGGTCGTCACGGCCGCACATGCGGAACATGGCACTCAGGCCGCGCTCAGTGACCTGTGGGTTGGTGGAGCCTGGGGTGATGGCGATCACGCCCGCCTCGTCATATACCTCGGACGCCGGGATCGTGTTggag                                                                                                                                          <  3:175071/149‑1 (MQ=255)           gacgaTACCCTGCTGGTCGTCACGGCCGCACATGCGGAACATGGCACTCAGGCCGCGCTCAGTGACCTGTGGGTTGGTGGAGCCTGGGGTGATGGCGATCACGCCCGCCTCGTCATATACCTCGGACGCCGGGATCGTGTTGGAGGAAc                                                                                                                                      <  7:250700/149‑1 (MQ=255)              gaTACCCTGCTGGTCGTCACGGCCGCACATGCGGAACATGGCACTCAGGCCGCGCTCAGTGACCTGTGGGTTGGTGGAGCCTGGGGTGATGGCGATCACGCCCGCCTCGTCATATACCTCGGACGCCGGGATCGTGTTGGAGGAACAg                                                                                                                                    >  2:110155/1‑148 (MQ=255)                   ccTGCTGGTCGTCACGGCCGCACATGCGGAACATGGCACTCAGGCCGCGCTCAGTGACCTGTGGGTTGGTGGAGCCTGGGGTGATGGCGATCACGCCCGCCTCGTCATATACCTCGGACGCCGGGATCGTGTTGGAGGAACAGAAGTgg                                                                                                                              >  5:141540/1‑149 (MQ=255)                   ccTGCTGGTCGTCACGGCCGCACATGCGGAACATGGCACTCAGGCCGCGCTCAGTGACCTGTGGGTTGGTGGAGCCTGGGGTGATGGCGATCACGCCCGCCTCGTCATATACCTCGGACGCCGGGATCGTGGTGGAGGAACAGAAGTgg                                                                                                                              >  4:286112/1‑149 (MQ=255)                    ctgctgGTCGTCACGGCCGCACATGCGGAACATGGCACTCAGGCCGCGCTCAGTGACCTGTGGGTTGGTGGAGCCTGGGGTGATGGCGATCACGCCCGCCTCGTCATATACCTCGGACGCCGGGATCGTGTTGGAGGAACAGAAGTGGc                                                                                                                             >  7:211777/1‑149 (MQ=255)                     ccgaagcaagccgtggccgtggccaaccgcctggtcgatcaggacaaggtgattggcgtggtgggccacttctgttcctccaacaCGATCACGCCCGCCTCGTCATATACCTCGGACGCCGGGATCGTGtt                                                                                                                                              >  2:140601‑M1/86‑131 (MQ=255)                     ccgaagcaagccgtggccgtggccaaccgcctggtcgatcaggacaaggtgattggcgtggtgggccacttctgttcctccaacaCGATCACGCCCGCCTCGTCATATACCTCGGACGCCGGGATCGTGtt                                                                                                                                              <  1:140601‑M1/46‑1 (MQ=255)                           tcgtcACGGCCGCACATGCGGAACATGGCAATCAGGCCGCGATCAGTGAGCTGTGGGTTGGTGGAGCCTGGGGTGATGGCGATCACCCCCGCCTCGTCATATACGTCGGACGCCGGGATCGTGTTGGAGGAACAGAAGTGGCCcaccac                                                                                                                      >  8:235304/1‑149 (MQ=255)                             gtcACGGCCGCACATGCGGAACATGGCACTCAGGCCGCGCTCAGTGACCTGTGGGTTGGTGGAGCCTGGGGTGATGGCGATCACGCCCGCCTCGTCATATACCTCGGACGCCGGGATCGTGTTggag                                                                                                                                          <  7:26651/127‑1 (MQ=255)                             gtcACGGCCGCACATGCGGAACATGGCACTCAGGCCGCGCTCAGTGACCTGTGGGTTGGTGGAGCCTGGGGTGATGGCGATCACGCCCGCCTCGTCATATACCTCGGACGCCGGGATCGTGTTggag                                                                                                                                          >  8:26651/1‑127 (MQ=255)                             gtcACGGCCGCACATGCGGAACATGGCACTCAGGCCGCGCTCAGTGACCTGTGGGTTGGTGGAGCCTGGGGTGATGGCGATCACGCCCGCCTCGTCATATACCTCGGACGCCGGGATCGTGTTGGAGGAACAGAAGTGGCCCACCACGc                                                                                                                    <  5:191283/149‑1 (MQ=255)                             gtcACGGCCGCACATGCGGAACATGGCACTCAGGCCGCGCTCAGTGACCTGTGGGTTGGGGGAGCCTGGGGTGATGGCGATCACGCCCGCCTCGTCATATACCTCCGACGCCGGGATCGTGTTGGAGGAACAGATGTGGCCCACCACg                                                                                                                     <  8:114893/148‑1 (MQ=255)                                aCGGCCGCACATGCGGAACATGGCACTCAGGCCGCGCTCAGTGACCTGTGGGTTGGTGGAGCCTGGGGTGATGGCGATCACGCCCGCCTCGTCATATACCTCGGACGCCGGGATCGTGTTgga                                                                                                                                           >  7:58439/1‑123 (MQ=255)                                aCGGCCGCACATGCGGAACATGGCACTCAGGCCGCGCTCAGTGACCTGTGGGTTGGTGGAGCCTGGGGTGATGGCGATCACGCCCGCCTCGTCATATACCTCGGACGCCGGGATCGTGTTgga                                                                                                                                           <  8:58439/123‑1 (MQ=255)                                aCGGCCGCACATGCGGAACATGGCACTCAGGCCGCGCTCAGTGACCTGTGGGTTGGTGGAGCCTGGGGTGATGGCGATCACGCCCGCCTCGTCATATACCTCGGACGCCGGGATCGTGTTGGAGGAACAGAAGTGGCCCACCACGCCaa                                                                                                                 >  8:167446/1‑149 (MQ=255)                                     cGCACATGCGGAACATGGCACTCAGGCCGCGCTCAGTGACCTGTGGGTTGGTGGAGCCTGGGGTGATGGCGATCACGCCCGCCTCGTCATATACCTCGGACGCCGGGATCGTGTTGGAGGAACAGAAGTGGCCCACCACGCCAATCAcc                                                                                                            >  5:283006/1‑149 (MQ=255)                                      gCACATGCGGAACATGGCACTCAGGCCGCGCTCAGTGACCTGTGGGTTGGTGGAGCCTGGGGTGATGGCGATCACGCCCGCCTCGTCATATACCTCGGACGCCGGGATCGTGTTGGAGGAACAGAAGTGGCCCACCACGCCAATCACCt                                                                                                           >  6:29264/1‑149 (MQ=255)                                              ggAACATGGCACTCAGGCCGCGCTCAGTGACCTGTGGGTTGGTGGAGCCTGGGGTGATGGCGATCACGCCCGCCTCGTCATATACCTCGGACGCCGGGATCGTGTTGGAGGAACAGAAGTGGCCCACCACGCCAATCACCTTGTCCTGa                                                                                                   <  1:110155/149‑1 (MQ=255)                                               gAACATGGCACTCAGGCCGCGCTCAGTGACCTGTGGGTTGGTGGAGCCTGGGGTGATGGCGATCACGCCCGCCTCGTCATATACCTCGGACGCCGGGATCGTGTTgg                                                                                                                                            >  1:330487/1‑107 (MQ=255)                                               gAACATGGCACTCAGGCCGCGCTCAGTGACCTGTGGGTTGGTGGAGCCTGGGGTGATGGCGATCACGCCCGCCTCGTCATATACCTCGGACGCCGGGATCGTGTTgg                                                                                                                                            <  2:330487/107‑1 (MQ=255)                                                            aGGCCGCGCTCAGTGACCTGTGGGTTGGTGGAGCCTGGGGTGATGGCGATCACGCCCGCCTCGTCATATACCTCGGACGCCGGGATCGTGTTGGAGGAACAGAAGTGGCCCACCACGCCAATCACCTTGTCCTGATCGACCAGGCgg                                                                                       <  6:141540/147‑1 (MQ=255)                                                                   gcTCAGTGACCTGTGGGTTGGTGGAGCCTGGGGTGATGGCGATCACGCCCGCCTCGTCATATACCTCGGACGCCGGGATCGTGTTGGAGGAACAGAAGTGGCCCACCACGCCAATCACCTTGTCCTGATCGACCAGGCGGTTggccacg                                                                              >  8:164923/1‑149 (MQ=255)                                                                              tgtgGGTTGGTGGAGCCTGGGGTGATGGCGATCACGCCCGCCTCGTCATATACCTCGTACGCCGGGATCGTGTTGGAGGAACAGAAGTGGCCCACCACGCCAAACACCTTGTCCTGATCGACCAGGCGGTTGGCCACGGCCACGgcttc                                                                   >  5:139674/1‑148 (MQ=255)                                                                                tgGGTTGGTGGAGCCTGGGGTGATGGCGATCACGCCCGCCTCGTCATATACCTCGGACGCCGGGATCGTGTTGGAGGAACAGAAGTGGCCCACCACGCCAATCACCTTGTCCTGATCGACCAGGCGGTTGGCCACGGCCACGgcttgct                                                                 >  1:74260/1‑149 (MQ=255)                                                                                      ggtggAGCCTGGGGTGATGGCGATCACGCCCGCCTCGTCATATACCTCGGACGCCGGGATCGTGTTGGAGGAACAGAAGTGGCCCACCACGCCAATCACCTTGTCCTGATCGACCAGGCGGTTGGCCACGGCCACGGCTTGCTTCGGt                                                            <  8:14963/148‑1 (MQ=255)                                                                                               tGGGGTGATGGCGATCACGCCCGCCTCGTCATATACCTCGGACGCCGGGATCGTGTTGGAGGAACAGAAGTGGCCCACCACGCCAATCACCTTGTCCTGATCGACCAGGCGGTTGGCCACGGCCACGGCTTGCTTCGGTTCACAGGCg                                                   >  7:274287/1‑148 (MQ=255)                                                                                                   tccaacacgatcccggcgtccgaggtgtatgacgaggcgggcgtgatcgTGTTGGAGGAACAGAAGTGGCCCACCACGCCAATCACCTTGTCCTGATCGACCAGGCGGTTGGCCACGGCCACGGCTTGCTTCGGTTCACAGGCGTCATc                                              >  4:290980‑M2/50‑149 (MQ=255)                                                                                                      aacacgatcccggcgtccgaggtatatgacgaggcgggcgtgatcgTGTTGGAGGAACAGAAGTGGCCCACCACGCCAATCACCTTGTCCTGATCGACCAGGCGGTTGGCCACGGCCACGGCTTGCTTCgg                                                             >  2:140601‑M2/47‑131 (MQ=255)                                                                                                      aacacgatcccggcgtccgaggtatatgacgaggcgggcgtgatcgTGTTGGAGGAACAGAAGTGGCCCACCACGCCAATCACCTTGTCCTGATCGACCAGGCGGTTGGCCACGGCCACGGCTTGCTTCgg                                                             <  1:140601‑M2/85‑1 (MQ=255)                                                                                                        ggCGATCACGCCCGCCTCGTCATATACCTCGGACGCCGGGATCGTGTTGGAGGAACAGAAGTGGCCCACCACGCCAATCACCTTGTCCTGATCGACCAGGCGGTTGGCCACGGCCACGGCTTGCTTCGGTTCACAGGCGTCATCGCCtt                                         >  4:256144/1‑149 (MQ=255)                                                                                                         gccacCACGCCCGCCTCGTCATATACCTCCGACGCCGGGTTCGTGTTGGAGGATCAGAAGTGGCCCTCCACGCCAATCACCTTGTCCTGTTCGACCAGGCGGTTGGCCACGGCCACGGCTTGCTTCGGTTCACAGGCGTCATCGCCtt                                         >  7:235304‑M1/6‑148 (MQ=255)                                                                                                         gCGATCACGCCCGCCTCGTCATATACCTCGGACGCCGGGATCGTGTTGGAGGAACAGAAGTGGCCCACCACGCCAATCACCTTGTCCTGATCGACCAGGCGGTTGGCCACGGCCACGGCTTGCTTCGGTTCACAGGCGTCATCGCCtt                                         <  7:167446/148‑1 (MQ=255)                                                                                                                 gcccgccTCGTCATATACCTCGGACGCCGGGATCATGTTGGAGGAACAGAAGTGGCCCACCACGCCAATCACCTTGTCCTGATCGACCAGGCGGTTGGCCACGGCCACGGCTTGCTTCGGTTCACAGGCGTCATCGCCTTTGACCAGGa                                >  2:279653/1‑149 (MQ=255)                                                                                                                          gTCATATACCTCGGACGCCGGGATCGTGTTGGAGGAACAGAAGTGGCCCACCACGCCAATCACCTTGTCCTGATCGACCAGGCGGTTGGCCACGGCCACGGCTTGCTTCGGTTCACAGGCGTCATCGCCTTTGACCAGGACGATTTtc                        <  6:283006/148‑1 (MQ=255)                                                                                                                           tCATATACCTCGGACGCCGGGATCGTGTTGGAGGAACAGAAGTGGCCCACCACGCCAATCACCTTGTCCTGATCGACCAGGCGGTTGGCCACGGCCCCGGCTGGCTTCGGTTCACAGGCGTCCTCTCCGTTGACCCGGCCCAGTTtctc                      >  8:126103/1‑149 (MQ=255)                                                                                                                            cATATACCTCGGACGCCGGGATCGTGTTGGAGGAACAGAAGTGGCCCACCACGCCAATCACCTTGTCCTGATCGACCAGGCGGTTGGCCACGGCCACGGCTTGCTTCGGTTCACAGGCGTCATCGCCTTTGACCAGGACGATTTTCTCg                     >  4:150810/1‑149 (MQ=255)                                                                                                                             atatACCTCGGACGCCGGGATCGTGTTGGAGGAACAGAAGTGGCCCACCACGCCAATCACCTTGTCCTGATCGACCAGGCGGTTGGCCACGGCCACGGCTTGCTTCGGTTCACAGGCGTCATCg                                             >  7:260509/1‑124 (MQ=255)                                                                                                                             atatACCTCGGACGCCGGGATCGTGTTGGAGGAACAGAAGTGGCCCACCACGCCAATCACCTTGTCCTGATCGACCAGGCGGTTGGCCACGGCCACGGCTTGCTTCGGTTCACAGGCGTCATCg                                             <  8:260509/124‑1 (MQ=255)                                                                                                                                   cTCGGACGCCGGGATCGTGTTGGAGGAACAGAAGTGGCCCACCACGCCAATCACCTTGTCCTGATCGACCAGGCGGTTGGCCACGGCCACGGCTTGCTTCGGTTCACAGGCGTCATCGCCTTTGACCAGGACGATTTTCTCGCCATTCa              <  6:181793/149‑1 (MQ=255)                                                                                                                                      ggACGCCGGGATCGTGTTGGAGGAACAGAAGTGGCCCACCACGCCAATCACCTTGTCCTGATCGACCAGGCGGTTGGCCACGGCCACGGCTTGCTTCGGTTCACAGGCGTCATCGCCTTTGACCAGGACGATTTTCTCGCCATTCACGc           >  2:110743/1‑149 (MQ=255)                                                                                                                                           ccGGGATCGTGTTGGAGGAACAGAAGTGGCCCACCACGCCAATCACCTTGTCCTGAt                                                                                                  >  5:216082/1‑57 (MQ=255)                                                                                                                                           ccGGGATCGTGTTGGAGGAACAGAAGTGGCCCACCACGCCAATCACCTTGTCCTGAt                                                                                                  <  6:216082/57‑1 (MQ=255)                                                                                                                                            cGGGATCGTGTTCGAGGAACAGAAGTGGCCCACCACGCCAATCACCTTGTCCTGATCGACCAGTCGGTTGGCCACGGCCACGGCTTGCTTCGGTTCACAGGCGTCATCGCCTATGACCAGGACGAATATCTCGCCATTCACGCAACCAg     >  6:135248/1‑149 (MQ=255)                                                                                                                                               gatcgTGTTGGAGGAACAGAAGTGGCCCACCACGCCAATCACCTTGTCCTGATCGACCAGGCGGTTGGCCACGGCCACGGCTTGCTTCGGTTCACAGGCGTCATCGCCTTTGACCAGGACGATTTTCTCGCCATTCACGCCACCAgcgg  <  5:29264‑M2/144‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                AGTCGCCAGCGACGATACCCTGCTGGTCGTCACGGCCGCACATGCGGAACATGGCACTCAGGCCGCGCTCAGTGACCTGTGGGTTGGTGGAGCCTGGGGTGATGGCGATCACGCCCGCCTCGTCATATACCTCGGACGCCGGGATCGTGTTGGAGGAACAGAAGTGGCCCACCACGCCAATCACCTTGTCCTGATCGACCAGGCGGTTGGCCACGGCCACGGCTTGCTTCGGTTCACAGGCGTCATCGCCTTTGACCAGGACGATTTTCTCGCCATTCACGCCACCAGCGG  >  NC_002947/5534003‑5534293

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.