| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5855296 = | 51 (0.870) | 4 (0.070) | 3/248 | NT | 8.3% | coding (1316/1392 nt) | tcyP | sodium/cystine symporter |
| ? | NC_002947 | 5855345 = | 39 (0.690) | coding (1365/1392 nt) | tcyP | sodium/cystine symporter | |||||
TCACCGGCCAGCACTTCCTTGTCAGTCTCTTTCAACAGCTGGCTGGTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5855344‑5855296‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtgaTGAACATGCCGAGCTGAGCCACACCTGACAGATCGCCGGGGCGCATTGCGCCCCTTTCGCGACAAGGCCGCTCGTGTCTTGCTCAAAACCTGAACACCCTGCGCCCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCA > NC_002947/5855345‑5855490 TCACCGGCCAGCACTTCCTTGTCAGTCTCTTTCAACAGCTGGCTGGTGATGAACATGCCGAGCTGAGCCACACCTGACAGATCGCCGGGGCGCATTGCGCCCCTTTCGCGACAAGGCCGCTCGTGTCTTGCTCAAAACCTGAACACCCT > 3:175643/1‑149TCACCGGCCAGCACTTCCTTGTCAGTCTCTTTCAACAGCTGGCTGGTGATGAACATGCCGAGCTGAGCCACACCTGACAGATCGCCGGGGCGCATTGCGCCCCTTTCGCGACAAGGCCGCTCGTGTCTTGCTCAAAACCTGAACACCCT > 5:351486/1‑149 CACCGGCCAGCACTTCCTTGTCAGTCTCTTTCAACAGCTGGCTGGTGATGAACATGCCGAGCTGAGCCACACCTGACAGATCGCCGGGGCGCATTGCGCCCCTTTCGCGACAAGGCCGCTCGTGTCTTGCTCAAAACCTG > 5:194713/1‑140 CACCGGCCAGCACTTCCTTGTCAGTCTCTTTCAACAGCTGGCTGGTGATGAACATGCCGAGCTGAGCCACACCTGACAGATCGCCGGGGCGCATTGCGCCCCTTTCGCGACAAGGCCGCTCGTGTCTTGCTCAAAACCTG < 6:194713/140‑1 GTGATGAACATGCCGAGCTGAGCCACACCTGACAGATCGCCGGGGCGCATTGCGCCCCTTTCGCGACAAGGCCGCTCGTGTCTTGCTCAAAACCTGAACACCCTGCGCCCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAA < 6:351486/147‑1 TGATGAACATGCCGAGCTGAGCCACACCTGACAGATCGCCGGGGCGCATTGCGCCCCTTTCGCGACAAGGCCGCTCGTGTCTTGCTCAAAACCTGAACACCCTGCGCCCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCA < 8:260705/149‑1 GATGAACATGCCGAGCTGAGCCACACCTGACAGATCGCCGGGGCGCATTGCGCCCCTTTCGCGACAAGGCCGCTCGTGTCTTGCTCAAAACCTGAACACCCTGCGCCCC > 1:351327/1‑109 GATGAACATGCCGAGCTGAGCCACACCTGACAGATCGCCGGGGCGCATTGCGCCCCTTTCGCGACAAGGCCGCTCGTGTCTTGCTCAAAACCTGAACACCCTGCGCCCC < 2:351327/109‑1 TCACCGGCCAGCACTTCCTTGTCAGTCTCTTTCAACAGCTGGCTGGTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5855344‑5855296‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtgaTGAACATGCCGAGCTGAGCCACACCTGACAGATCGCCGGGGCGCATTGCGCCCCTTTCGCGACAAGGCCGCTCGTGTCTTGCTCAAAACCTGAACACCCTGCGCCCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCA > NC_002947/5855345‑5855490 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |