New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5855296 =	51 (0.870)	4 (0.070)	3/248	NT	8.3%	coding (1316/1392 nt)	tcyP	sodium/cystine symporter
	?	NC_002947	5855345 =	39 (0.690)					coding (1365/1392 nt)	tcyP	sodium/cystine symporter

CCGGTGGAACTGGTGGCGTTGCTGATTTCGGTGGAGCCGCTGATCGACATGGGCCGTACGGCGTTGAACGTGAACGGTTCGATGACGGCGGGCGTTGTCACCAGCCAGCTGTTGAAAGAGACTGACAAGGAAGTGCTGGCCGGTGATGAACATGCCGAGCTGAGCCACACCTGACAGATCGCCGGGGCGCATTGCGCCCCTTTCGCGACAAGGCCGCTCGTGTCTTGCTCAAAACCTGAACACCCTGCGCCCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCA  >  NC_002947/5855199‑5855490                                                                                                                                                   |                                                                                                                                                  ccGGTGGAACTGGTGGCGTTGCTGATTTCGGTGGAGCCGCTGATCGACATGGGCCGTACGGCGTTGAACGTGAACGGTTCGATGACGGCGGGCGTTGTCACCAGCCAGCTGTTGAAAGAGACTGACAAGGAAGTGCTGGCCGGtgatg                                                                                                                                                  <  8:128718/148‑1 (MQ=255)       gAACTGGTGGCGTTGCTGATTTCGGTGGAGCCGCTGATCGACATGGGCCGTACGGCGTTGAACGTGAACGGTTCGATGACGGCGGGCGTTGTCACCAGCCAGCTGTTGAAAGAGACTGACAAGGAAGTGCTGGCCGGTGATGAACATGc                                                                                                                                           <  4:286000/149‑1 (MQ=255)                gCGTTGCTGATTTCGGTGGAGCCGCTGATCGACATGGGCCGTACGGCGTTGAACGTGAACGGTTCGATGACGGCGGGCGTTGTCACCAGCCAGCTGTTGAAAGAGACTGACAAGGAAGTGCTGGCCGGTGATGAACATGCCGAGCTGa                                                                                                                                   <  5:113938/148‑1 (MQ=255)                          tttCGGTGGAGCCGCTGATCGACATGGGCCGTACGGCGTTGAACGTGAACGGTTCGATGACGGCGGGCGTTGTCACCAGCCAGCTGTTGAAAGAGACTGACAAGGAAGTGCTGGCCGGTGATGAACATGCCGAGCTGAGCCACACCTGa                                                                                                                        <  2:200487/149‑1 (MQ=255)                            tCGGTGGAGCCGCTGATCGACATGGGCCGTACGGCGTTGAACGTGAACGGTTCGATGACGGCGGGCGTTGTCACCAGCCAGCTGTTGAAAGAGACTGACAAGGAAGTGCTGGCCGGTGATGAACATGCCGAGCTGAGCCACACCTGAc                                                                                                                       <  3:86596/148‑1 (MQ=255)                              ggTGGAGCCGCTGATCGACATGGGCCGTACGGCGTTGAACGTGAACGGTTCGATGACGGCGGGCGTTGTCACCAGCCAGCTGTTGAAAGAGACTGACAAGGAAGTCCTGGCCGGTGATGAACATGCCGAGCTGAGCCACACCTGa                                                                                                                        >  5:365409/1‑145 (MQ=255)                                    gCCGCTGATCGACATGGGCCGTACGGCGTTGAACGTGAACGGTTCGATGACGGCGGGCGTTGTCACCAGCCAGCTGTTGAAAGAGACTGACAAGGAAGTGCTGGCCGGTGATGAACATGCCGAGCTGAGCCACACCTGACAGATCGCCg                                                                                                              >  6:72833/1‑149 (MQ=255)                                    gCCGCTGATCGACATGGGCCGTACGGCGTTGAACGTGAACGGTTCGATGACGGCGGGCGTTGTCACCAGCCAGCTGTTGAAAGAGACTGACAAGGAAGTGCTGGCCGGTGATGAACATGCCGAGCTGAGCCACACCTGACAGATCGCCg                                                                                                              >  6:340681/1‑149 (MQ=255)                                      cGCTGATCGACATGGGCCGTACGGCGTTGAACGTGAACGGTTCGATGACGGCGGGCGTTGTCACCAGCCAGCTGTTGAAAGAGACTGACAAGGAAGTGCTGGCCGGTGATGAACATGc                                                                                                                                           >  1:273231/1‑118 (MQ=255)                                      cGCTGATCGACATGGGCCGTACGGCGTTGAACGTGAACGGTTCGATGACGGCGGGCGTTGTCACCAGCCAGCTGTTGAAAGAGACTGACAAGGAAGTGCTGGCCGGTGATGAACATGc                                                                                                                                           <  2:273231/118‑1 (MQ=255)                                           aTCGACATGGGCCGTACGGCGTTGAACGTGAACGGTTCGATGACGGCGGGCGTTGTCACCAGCCAGCTGTTGAAAGAGACTGACAAGGAAGTGCTGGCCGGTGATGAACATGCCGAGCTGAGCCACACCTGACAGATCGCCGGGGCGCa                                                                                                       >  8:260231/1‑149 (MQ=255)                                               aCATGGGCCGTACGGCGTTGAACGTGAACGGTTCGATGACGGCGGGCGTTGTCACCAGCCAGCTGTTGAAAGAGACTGACAAGGATGTGCTGGCCGGTGATGAACATGCCGAGCTGAGCCACACCTGACAGATCGCCGGGGCGCATTgc                                                                                                   >  7:272163/1‑149 (MQ=255)                                               aCATGGGCCGTACGGCGTTGAACGTGAACGGTTCGATGACGGCGGGCGTTGTCACCAGCCAGCTGTTGAAAGAGACTGACAAGGAAGTGCTGGCCGGTGATGAACAt                                                                                                                                             <  4:255081/107‑1 (MQ=255)                                               aCATGGGCCGTACGGCGTTGAACGTGAACGGTTCGATGACGGCGGGCGTTGTCACCAGCCAGCTGTTGAAAGAGACTGACAAGGAAGTGCTGGCCGGTGATGAACAt                                                                                                                                             >  3:255081/1‑107 (MQ=255)                                               aCATGGGCCGTACGGCGTTGAACGTGAACGGTTCGATGACGGCGGGCGTTGTCACCAGCCAGCTGTTGAAAGAGACTGACAAGGAAGTGCTGGCCGGTGATGAACATGCCGAGCTGAGCCACACCTGACAGATCGCCGGGGCGCATTgc                                                                                                   >  7:244695/1‑149 (MQ=255)                                                    ggCCGTACGGCGTTGAACGTGAACGGTTCGATGACGGCGGGCGTTGTCACCAGCCAGCTGTTGAAAGAGACTGACAAGGAAGTGCTGGCCGGTGATGAACATGCCGAGCTGAGCCACACCTGACAGATCGCCGGGGCGCATTGCGcccc                                                                                              >  8:64029/1‑149 (MQ=255)                                                     gCCGTACGGCGTTGAACGTGAACGGTTCGATGACGGCGGGCGTTGTCACCAGCCAGCTGTTGAAAGAGACTGACAAGGAAGTGCTGGCCGGTGATGAACATGCCGAGCTGAGCCACACCTGACAGATCGCCGGGGCGCAATGCGccccg                                                                                             <  5:72833/149‑2 (MQ=255)                                                       cGTACGGCGTTGAACGTGAACGGTTCGATGACGGCGGGCGTTGTCACCAGCCAGCTGTTGAAAGAGACTGACAAGGAAGTGCTGGCCGGTGATGAACATGCCGAGCTGAGCCACACCTGACAGATCGCCGGGGCGCATTGCGCCCCttt                                                                                           <  6:365409/149‑1 (MQ=255)                                                       cGTACGGCGTTGAACGTGAACGGTTCGATGACGGCGGGCGTTGTCACCAGCCAGCTGTTGAAAGAGACTGACAAGGAAGTGCTGGCCGGTGATGAACATGCCGAGCTGAGCCACACCTGACAGATCGCCGGGGCGCATTGCGCCCCttt                                                                                           <  2:76464/149‑1 (MQ=255)                                                                   aacgtgaacgGTTCGATGACGGCGGGCGTTGTCACCAGCCAGCTGTTGAAAGAGACTGACAAGGAAGTGCTGGCCGGTGATGAACATGCCGAGCTGAGCCACACCTGACAGATCGCCGGGGCGCATTGCGCCCCTTTCGCGACAAGGcc                                                                               >  8:185338/1‑149 (MQ=255)                                                                    acgtgaacgGTTCGATGACGGCGGGCGTTGTCACCAGCCAGCTGTTGAAAGAGACTGACAAGGAAGTGCTGGCCGGTGATGAACATGCCGAGCTGAGCCACACCTGACAGATCGCCGGGGCGCATTGCGCCCCTTTCGCGACAAGGCCg                                                                              >  2:47337/1‑149 (MQ=255)                                                                      gtgaacgGTTCGATGACGGCGGGCGTTGTCACCAGCCAGCTGTTGAAAGAGACTGACAAGGAAGTGCTGGCCGGTGATGAACATGCCGAGCTGAGCCACACCTGACAGATCGCCGGGGCGCAATGCGccccg                                                                                             >  3:297666/1‑131 (MQ=255)                                                                      gtgaacgGTTCGATGACGGCGGGCGTTGTCACCAGCCAGCTGTTGAAAGAGACTGACAAGGAAGTGCTGGCCGGTGATGAACATGCCGAGCTGAGCCACACCTGACAGATCGCCGGGGCGCAATGCGccccg                                                                                             <  4:297666/132‑2 (MQ=255)                                                                        gaacgGTTCGATGACGGCGGGCGTTGTCACCAGCCAGCTGTTGAAAGAGACTGACAAGGAAGTGCTGGCCGGTGATGAACATGCCGAGCTGAGCCACACCTGACAGATCGCCGGGGCGCATTGCGCCCCTTTCGCGACAAGGCCGCTCg                                                                          >  7:260705/1‑149 (MQ=255)                                                                          acgGTTCGATGACGGCGGGCGTTGTCACCAGCCAGCTGTTGAAAGAGACTGACAAGGAAGTGCTGGCCGGTGATGAACATGCCGAGCTGAGCCACACCTGACAGATCGCCGGGGCGCATTGCGCCCCTTTCGCGACAAGGCCGCTCgtg                                                                        <  7:64029/149‑1 (MQ=255)                                                                                cGATGACGGCGGGCGTTGTCACCAGCCAGCTGTTGAAAGAGACTGACAAGGAAGTGCTGGCCGGTGATGAACATGCCGAGCTGAGCCACACCTGACAGATCGCCGGGGCGCATTGCGCCCCTTTCGCGACAAGGCCGCTCGTGTCTTg                                                                   <  5:340681/148‑1 (MQ=255)                                                                                 gATGACGGCGGGCGTTGTCACCAGCCAGCTGTTGAAAGAGACTGACAAGGAAGTGCTGGCCGGTGATGAACATGCCGAGCTGAGCCACACCTGACAGATCGCCGGGGCGCATTGCGCCCCTTTCGCGACAAGGCCGCTCGTGTCTTGCt                                                                 <  2:102903/149‑1 (MQ=255)                                                                                          gggcgTTGTCACCAGCCAGCTGTTGAAAGAGACTGACAAGGAAGTGCTGGCCGGTGATGAACATGCCGAGCTGAGCCACACCTGACAGATCGCCGGGGCGCATTGCGCCCCTTTCGCGACAAGGCCGc                                                                             <  5:204428/128‑1 (MQ=255)                                                                                          gggcgTTGTCACCAGCCAGCTGTTGAAAGAGACTGACAAGGAAGTGCTGGCCGGTGATGAACATGCCGAGCTGAGCCACACCTGACAGATCGCCGGGGCGCATTGCGCCCCTTTCGCGACAAGGCCGc                                                                             >  6:204428/1‑128 (MQ=255)                                                                                                  tcaccggccagcacttccttgtcagtctctttcaacagctggctggtgaTGAACATGCCGAGCTGAGCCACACCTGACAGATCGCCGGGGCGCATTGCGCCCCTTTCGCGACAAGGCCGCTCGTGTCTTGCTCAAAACCTGAACACCCt                                                >  3:175643‑M2/50‑149 (MQ=255)                                                                                                  tcaccggccagcacttccttgtcagtctctttcaacagctggctggtgaTGAACATGCCGAGCTGAGCCACACCTGACAGATCGCCGGGGCGCATTGCGCCCCTTTCGCGACAAGGCCGCTCGTGTCTTGCTCAAAACCTGAACACCCt                                                >  5:351486‑M2/50‑149 (MQ=255)                                                                                                   caccggccagcacttccttgtcagtctctttcaacagctggctggtgaTGAACATGCCGAGCTGAGCCACACCTGACAGATCGCCGGGGCGCATTGCGCCCCTTTCGCGACAAGGCCGCTCGTGTCTTGCTCAAAACCTg                                                        >  5:194713‑M2/49‑140 (MQ=255)                                                                                                   caccggccagcacttccttgtcagtctctttcaacagctggctggtgaTGAACATGCCGAGCTGAGCCACACCTGACAGATCGCCGGGGCGCATTGCGCCCCTTTCGCGACAAGGCCGCTCGTGTCTTGCTCAAAACCTg                                                        <  6:194713‑M2/92‑1 (MQ=255)                                                                                                                    aaGAGACTGACAAGGAAGTGCTGGCCGGTGATGAACATGCCGAGCTGAGCCACACCTGAc                                                                                                                       <  1:36993/60‑1 (MQ=255)                                                                                                                    aaGAGACTGACAAGGAAGTGCTGGCCGGTGATGAACATGCCGAGCTGAGCCACACCTGAc                                                                                                                       >  2:36993/1‑60 (MQ=255)                                                                                                                    aaGAGACTGACAAGGAAGTGCTGGCCGGTGATGAACATGCCGAGCTGAGCCACACCTGACAGATCGCCGGGGCGCATTGCGCCCCTTTCGCGACAAGGCCGCTCGTGTCTTGCTCAAAACCTGAACACCCTGCGCCCCCCCGTAGGAGc                              <  1:47337/149‑1 (MQ=255)                                                                                                                      gagaCTGACAAGGAAGTGCTGGCCGGTGATGAACATGCCGAGCTGAGCCACACCTGACAGATCGCCGGGGCGCATTGCGCCCCTTTCGCGACAAGGCCGCTCGTGTCTTGCTCAAAACCTGAACACCCTGCGCCCCCCCGTAGGAGCgg                            <  1:339576/149‑1 (MQ=255)                                                                                                                      gagaCTGACAAGGAAGTGCTGGCCGGTGATGAACATGCCGAGCTGAGCCACACCTGACAGATCGCCGGGGCGCATTGCGCCCCTTTCGCGACAAGGCCGCTCGTGTCTTGCTCAAAACCTGAACACCCTGCGCCCCCCCGTAGGAGCgg                            >  2:162616/1‑149 (MQ=255)                                                                                                                      gagaCTGACAAGGAAGTGCTGGCCGGTGATGAACATGCCGAGCTGAGCCACAACTGACAGATCGCCGGGGCGCATTGCGCCCCTTTCGCGACAAGGCCGCTCGTGTCTTGCTCAAAACCTGAACACCCTGCGCCCCCCCGTAGGAGCgg                            <  4:294484/149‑1 (MQ=255)                                                                                                                           tGACAAGGAAGTGCTGGCCGGTGATGAACATGCCGAGCTGAGCCACACCTGACAGATCGCCGGGGCGCATTGCGCCCCTTTCGCGACAAGGCCGCTCGTGTCTTGCTCAAAACCTGAACACCCTGCGCCCCCCCGTAGGAGCGGGTTCa                       >  8:103325/1‑149 (MQ=255)                                                                                                                             aCAAGGAAGTGCTGGCCGGTGATGAACATGCCGAGCTGAGCCACACCTGACAGATCGCCGGGGCGCATTGCGCCCCTTTCGCGACAAGGCCGCTCGTGTCTTGCTCAAAACCTGAACACCCTGCGCCCCCCCGTAGGAGCGGGTTCAcc                     <  8:244695/149‑1 (MQ=255)                                                                                                                                  gAAGTGCTGGCCGGTGATGAACATGCCGAGCTGAGCCACACCTGACAGATCGCCGGGGCGCATTGCGCCCCTTTCGCGACAAGGCCGCTCGTGTCTTGCTCAAAACCTGAACACCCTGCGCCCCCCCGTAGGAGCGGGTTCACCcgcg                 >  2:244007/1‑148 (MQ=255)                                                                                                                                  gAAGTGCTGGCCGGTGATGAACATGCCGAGCTGAGCCACACCTGACAGATCGCCGGGGCGCATTGCGCCCCTTTCGCGACAAGGCCGCTCGTGTCTTGCTCAAAACCTGAACACCCTGCGCCCCCCCGTAGGAGCGGGTTCACCcgcg                 >  5:354975/1‑148 (MQ=255)                                                                                                                                    aGTGCTGGCCGGTGATGAACATGCCGAGCTGAGCCACACCTGACAGATCGCCGGGGCGCATGGCGCCCCTTTCGCGACAAGGCCGCTCGTGTCTTGCTCAAACCCTGAACACCCTGCGCCCCCCCGTAGGAGCGGGTTCACCCGCGAAg              <  7:185338/149‑1 (MQ=255)                                                                                                                                           gCCGGTGATGAACATGCCGAGCTGAGCCACACCTGACAGATCGCCGGGGCGCATTGCGCCCCTTTCGCGACAAGGCCGCTCGTGTCTTGCTCAAAACCTGAACACCCTGCGCCCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGc        >  4:211898/1‑148 (MQ=255)                                                                                                                                             cGGTGATGAACATGCCGAGCTGAGCCACACCTGACAGATCGCCGGGGCGCATTGCGCCCCTTTCGCGACAAGGCCGCTCGTGTCTTGCTCAAAACCTGAACACCCTGCGCCCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCa       >  4:158257/1‑147 (MQ=255)                                                                                                                                               gtgaTGAACATGCCGAGCTGAGCCACACCTGACAGATCGCCGGGGCGCATTGCGCCCCTTTCGCGACAAGGCCGCTCGTGTCTTGCTCAAAACCTGAACACCCTGCGCCCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCaaa     <  6:351486‑M2/143‑1 (MQ=255)                                                                                                                                                tgaTGAACATGCCGAGCTGAGCCACACCTGACAGATCGCCGGGGCGCATTGCGCCCCTTTCGCGACAAGGCCGCTCGTGTCTTGCTCAAAACCTGAACACCCTGCGCCCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCa  <  8:260705‑M2/146‑1 (MQ=255)                                                                                                                                                 gaTGAACATGCCGAGCTGAGCCACACCTGACAGATCGCCGGGGCGCATTGCGCCCCTTTCGCGACAAGGCCGCTCGTGTCTTGCTCAAAACCTGAACACCCTGCGcccc                                         <  2:351327‑M2/107‑1 (MQ=255)                                                                                                                                                 gaTGAACATGCCGAGCTGAGCCACACCTGACAGATCGCCGGGGCGCATTGCGCCCCTTTCGCGACAAGGCCGCTCGTGTCTTGCTCAAAACCTGAACACCCTGCGcccc                                         >  1:351327‑M2/3‑109 (MQ=255)                                                                                                                                                   |                                                                                                                                                  CCGGTGGAACTGGTGGCGTTGCTGATTTCGGTGGAGCCGCTGATCGACATGGGCCGTACGGCGTTGAACGTGAACGGTTCGATGACGGCGGGCGTTGTCACCAGCCAGCTGTTGAAAGAGACTGACAAGGAAGTGCTGGCCGGTGATGAACATGCCGAGCTGAGCCACACCTGACAGATCGCCGGGGCGCATTGCGCCCCTTTCGCGACAAGGCCGCTCGTGTCTTGCTCAAAACCTGAACACCCTGCGCCCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCA  >  NC_002947/5855199‑5855490

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.