New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5876984 =	40 (0.680)	4 (0.080)	4/210	NT	13.0%	intergenic (+6/+99)	rpiA/PP_5151	ribose‑5‑phosphate isomerase A/hypothetical protein
	?	NC_002947	5877066 =	21 (0.440)					intergenic (+88/+17)	rpiA/PP_5151	ribose‑5‑phosphate isomerase A/hypothetical protein

TGAAGCGGGGACCATTTACCTGGTCAGTGAGCCGAACCTGTTCTATGTGTTCAAGCAGCCGACTGACTGATCGCCTGTCAGGGCCTGTTCGCGGGTAAACCCGCTCCTACAGGGATCGCCACGGTTCCAGGCCGGTGGGGTACCTTGTAGGAGCGGGTTTACCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5877152‑5876984 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtaggagcgggtttacccgcgaaCAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCATCCATCGCAATCCCCTCCGCCTGCGGCACCGTCGCCTGCAACCCCTGGAAACCCTTGC  >  NC_002947/5877066‑5877210                                                                                                                                                                                                                                                                                                                            TGAAGCGGGGACCATTTACCTGGTCAGTGAGCCGAACCTGTTCTATGTGTTCAAGCAGCCGACTGACTGATCGCCTGTCAGGGCCTGTTCGCGGGTAAACCCGCTCCTACAGGGATCGCCACGGTTCCAGGCCGGTGGGGTACCTTGTA                                                                                                                                                                       <  2:268367/149‑1   AAGCGGGGACCATTTACCTGGTCAGTGAGCCGAACCTGTTCTATGTGTTCAAGCAGCCGACTGACTGATCGCCTGTCAGGGCCTGTTCGCGGGTAAACCCGCTCCTACAGGGTTCGCCACGGTTCCAGGCCGGTGGGGTACCTTGTtg                                                                                                                                                                      <  2:258633/148‑3          GACCATTTACCTGGTCAGTGAGCCGAACCTGTTCTATGTGTTCAAGCAGCCGACTGACTGATCGCCTGTCAGGGCCTGTTCGCGGGTAAACCCGCTCCTACAGGGATCGCCACGGTTCCAGGCCGGTGGGGTACCTTGTAGGAGCGGGT                                                                                                                                                              <  2:102753/149‑1              ATTTACCTGGTCAGTGAGCCGAACCTGTTCTATGTGTTCAAGCAGCCGACTGACTGATCGCCTGTCAGGGCCTGTTCGCGGGTAAACCCGCTCCTACAGGGATCGCCACGGTTCCAGGCCGGTGGGGTACCTTGTAGGAGCGGG                                                                                                                                                               <  7:102938/144‑1              ATTTACCTGGTCAGTGAGCCGAACCTGTTCTATGTGTTCAAGCAGCCGACTGACTGATCGCCTGTCAGGGCCTGTTCGCGGGTAAACCCGCTCCTACAGGGATCGCCACGGTTCCAGGCCGGTGGGGTACCTTGTAGGAGCGGG                                                                                                                                                               >  8:102938/1‑144                                                                TGACTGATCGCCTGTCAGGGCCTGTTCGCGGGTAAACCCGCTCCTACAGAGATCGCCACGGTTCCAGGCCGGTGGGGTACCTTGTAGGAGCGGGTTT                                                                                                                                                            <  1:165381/97‑1                                                                TGACTGATCGCCTGTCAGGGCCTGTTCGCGGGTAAACCCGCTCCTACAGAGATCGCCACGGTTCCAGGCCGGTGGGGTACCTTGTAGGAGCGGGTTT                                                                                                                                                            >  2:165381/1‑97                                                                                               GTAAACCCGCTCCTACAGGGATCGCCACGGTTCCAGGCCGGTGGGGTACCTTGTAGGAGCGGGTTTA                                                                                                                                                           >  1:80533/1‑67                                                                                               GTAAACCCGCTCCTACAGGGATCGCCACGGTTCCAGGCCGGTGGGGTACCTTGTAGGAGCGGGTTTA                                                                                                                                                           <  2:80533/67‑1                                                                                                       GCTCCTACAGGGATCGCCACGGTTCCAGGCCGGTGGGGTACCTTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATG                                                                        >  5:308307/1‑142                                                                                                       GCTCCTACAGGGATCGCCACGGTTCCAGGCCGGTGGGGTACCTTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATG                                                                        <  6:308307/142‑1                                                                                                         TCCTACAGGGATCGCCACGGTTCCAGGCCGGTGGGGTACCTTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCT                                                               >  3:178937/1‑149                                                                                                                 GGATCGCCACGGTTCCAGGCCGGTGGGGTACCTTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCATCCAT                                                       >  8:334570/1‑149                                                                                                                                                  TGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCATCCATCGCAATCCCCTCCGCCTGCG                                   <  1:351770/136‑1                                                                                                                                                  TGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCATCCATCGCAATCCCCTCCGCCTGCG                                   >  2:351770/1‑136                                                                                                                                                            GGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCATCCATCGCAATCCCCTCCGCCTGCGGCACCGTCGCCTGCAACCCCTG             >  7:281594/1‑148                                                                                                                                                            GGTTTACCAGCGAACAGGCCCTGACAGGCGATCAGTCAGTAGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACAAGGTAAATGGTCCCCGCTTCATCCATCGCAATCCCCTCCGCCTGCGGCACCTTCGCCAGCAACCCCTG             >  8:45506/1‑148                                                                                                                                                                    CGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCATCCATCGCAATCCCCTCCGCCTGCGGCACCGTCGCCTGCAACCCCTGGAAACCCTT    <  8:281594/149‑1                                                                                                                                                                      CGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCATCCATCGCAATCCCCTCCGCCTGCGGCACCGTCGCCTGCAACCCCTGGAAACCCTTGC  <  7:334570/149‑1                                                                                                                                                                                                                                                                                                                            TGAAGCGGGGACCATTTACCTGGTCAGTGAGCCGAACCTGTTCTATGTGTTCAAGCAGCCGACTGACTGATCGCCTGTCAGGGCCTGTTCGCGGGTAAACCCGCTCCTACAGGGATCGCCACGGTTCCAGGCCGGTGGGGTACCTTGTAGGAGCGGGTTTACCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5877152‑5876984 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtaggagcgggtttacccgcgaaCAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCATCCATCGCAATCCCCTCCGCCTGCGGCACCGTCGCCTGCAACCCCTGGAAACCCTTGC  >  NC_002947/5877066‑5877210

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.