New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5876984 =	40 (0.680)	4 (0.080)	4/210	NT	13.0%	intergenic (+6/+99)	rpiA/PP_5151	ribose‑5‑phosphate isomerase A/hypothetical protein
	?	NC_002947	5877066 =	21 (0.440)					intergenic (+88/+17)	rpiA/PP_5151	ribose‑5‑phosphate isomerase A/hypothetical protein

AGATCACCAACCCGGTGGAGCTGGAAGCGCAGATCAACGCCATCGTCGGCGTGGTGACCAACGGCCTGTTCGCGGCGCGGCCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACT  >  NC_002947/5876839‑5877127                                                                                                                                                  |                                                                                                                                                 gcaagggtttccaggggttgcaggcgacggtgccgcaggcggaggggattgcgatggatgaagcggggaccatttacctggtcagtgagccgaacctgttctatgtgttcaagcagccgactgactgatcgcctgtcagggcctgTTcg                                                                                                                                               <  7:334570‑M1/4‑1 (MQ=255)   aagggtttccaggggttgcaggcgacggtgccgcaggcggaggggattgcgatggatgaagcggggaccatttacctggtcagtgagccgaacctgttctatgtgttcaagcagccgactgactgatcgcctgtcagggcctgTTcgc‑g                                                                                                                                            <  8:281594‑M1/6‑1 (MQ=255)   aTCACCAACCCGGTGGAGCTGGAAGCGCAGATCAACGCCATCGTCGGCGTGGTGACCAACGGCCTGTTCGCGGCGCGGCCGGTGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTcgc‑g                                                                                                                                            >  2:266768/1‑149 (MQ=255)     cACCAACCCGGTGGAGCTGGAAGCGCAGATCAACGCCATCGTCGGCGTGGTGACCAACGGCCTGTTCGCGGCGCGGCCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑ggg                                                                                                                                          >  7:20087/1‑149 (MQ=255)        cAACCCGGTGGAGCTGGAAGCGCAGATCAACGCCATCGTCGGCGTGGTGACCAACGGCCTGTTCGCGGCGCGGCCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCGGAAGGCCGAGTAAAACCCTTCGC‑GGGTa                                                                                                                                        >  5:330298/1‑148 (MQ=255)            ccGGTGGAGCTGGAAGCGCAGATCAACGCCATCGTCGGCGTGGTGACCAACGGCCTGTTCGCGGCGCGGCCGGCGGATCTGCTGCTGCTGGGCACCGCTGAATGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGGTAAAca                                                                                                                                    >  5:323164/1‑148 (MQ=255)            caggggttgctggcgaaggtgccgcaggcggaggggattgcgatggatgaagcggggaccatttaccttgtcagtgagccgaacctgttctatgtgttcaagcagcctactgactgatcgcctgtcagggcctgTTCGC‑TGGTAAAcc                                                                                                                                    >  8:45506‑M1/135‑148 (MQ=255)            caggggttgcaggcgacggtgccgcaggcggaggggattgcgatggatgaagcggggaccatttacctggtcagtgagccgaacctgttctatgtgttcaagcagccgactgactgatcgcctgtcagggcctgTTCGC‑GGGTAAAcc                                                                                                                                    >  7:281594‑M1/135‑148 (MQ=255)             cGGTGGAGCTGGAAGCGCAGATCAACGCCATCGTCGGCGTGGTGACCAACGGCCTGTTCGCGGCGCGGCCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCg                                                                                                                                  >  4:84707/1‑149 (MQ=255)                tGGAGCTGGAAGCGCAGATCAACGCCATCGTCGGCGTGGTGACCAACGGCCTGTTCGCGGCGCGGCCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCGCTc                                                                                                                               <  4:266138/149‑1 (MQ=255)                          aGCGCAGATCAACGCCATCGTCGGCGTGGTGACCAACGGCCTGTTCGCGGCGCGGCCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCGCTCCTACAAGGTa                                                                                                                     <  6:298389/149‑1 (MQ=255)                           gcgcAGATCAACGCCATCGTCGGCGTGGTGACCAACGGCCTGTTCGCGGCGCGGCCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCGCTCCTACAAGGTAc                                                                                                                    <  1:87966/149‑1 (MQ=255)                             gcAGATCAACGCCATCGTCGGCGTGGTGACCAACGGCCTGTTCGCGGCGCGGCCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTTTACCCGcgaa                                                                                                                              >  3:218772/1‑134 (MQ=255)                             gcAGATCAACGCCATCGTCGGCGTGGTGACCAACGGCCTGTTCGCGGCGCGGCCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTTTACCCGcgaa                                                                                                                              <  4:218772/137‑4 (MQ=255)                                  cgcaggcggaggggattgcgatggatgaagcggggaccatttacctggtcagtgagccgaacctgttctatgtgttcaagcagccgactgactgatcgcctgtcagggcctgTTCGC‑GGGTAAACCCGCTCCTACa                                                                                                                          >  2:351770‑M1/113‑136 (MQ=255)                                  cgcaggcggaggggattgcgatggatgaagcggggaccatttacctggtcagtgagccgaacctgttctatgtgttcaagcagccgactgactgatcgcctgtcagggcctgTTCGC‑GGGTAAACCCGCTCCTACa                                                                                                                          <  1:351770‑M1/24‑1 (MQ=255)                                   cAACGCCATCGTCGGCGTGGTGACCAACGGCCTGTTCGCGGCGCGGCCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTTAAACCCCAGCTACAAGGTACcccccccg                                                                                                            >  3:199431/1‑147 (MQ=255)                                   cAACGCCATCGTCGGCGTGGTGACCAACGGCCTGTTCGCGGCGCGGCCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GCGTAAAACCGCGCCGAGAAAGTAACCCCCCgg                                                                                                            >  4:270277/1‑149 (MQ=255)                                    aaCGCCATCGTCGGCGTGGTGACCAACGGCCTGTTCGCGGCGCGGCCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCGCTCCTACAAGGTACCCCACCGGc                                                                                                           >  7:84541/1‑149 (MQ=255)                                     aCGCCATCGTCGGCGTGGTGACCAACGGCCTGTTCGCGGCGCGGCCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCGCTCCTACAAGGTACCCCACCGGcc                                                                                                          >  6:58691/1‑149 (MQ=255)                                      cGCCATCGTCGGCGTGGTGACCAACGGCCTGTTCGCGGCGCGGCCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCt                                                                                                         <  3:84707/149‑1 (MQ=255)                                      cGCCATCGTCGGCGTGGTGACCAACGGCCTGTTCGCGGCGCGGCCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCt                                                                                                         <  6:330298/149‑1 (MQ=255)                                        ccATCGTCGGCGTGGTGACCAACGGCCTGTTCGCGGCGCGGCCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTgg                                                                                                       <  8:20087/149‑1 (MQ=255)                                           tcgtcgGCGTGGTGACCAACGGCCTGTTCGCGGCGCGGCCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAAc                                                                                                    <  6:6445/149‑1 (MQ=255)                                             gtcgGCGTGGTGACCAACGGCCTGTTCGCGGCGCGGCCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCGCTCCTACAAGGTACCCCACCGGGCTGGAACCg                                                                                                  <  8:189794/149‑1 (MQ=255)                                                      gtgACCAACGGCCTGTTCGCGGCGCGGCCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATcc                                                                                         <  7:273246/149‑1 (MQ=255)                                                      atggatgaagcggggaccatttacctggtcagtgagccgaacctgttctatgtgttcaagcagccgactgactgatcgcctgtcagggcctgTTCGC‑GGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATcc                                                                                         >  8:334570‑M1/93‑149 (MQ=255)                                                            aaCGGCCTGTTCGCGGCGCGGCCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAg                                                                                   <  5:101368/149‑1 (MQ=255)                                                              agcggggaccatttacctggtcagtgagccgaacctgttctatgtgttcaagcagccgactgactgatcgcctgtcagggcctgTTCGC‑GGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGa                                                                                 >  3:178937‑M1/85‑149 (MQ=255)                                                                gCCTGTTCGCGGCGCGGCCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGc                                                                               <  4:38444/149‑1 (MQ=255)                                                                 ccTGTTCGCGGCGCGGCCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCg                                                                              <  3:94074/149‑1 (MQ=255)                                                                       catttacctggtcagtgagccgaacctgttctatgtgttcaagcagccgactgactgatcgcctgtcagggcctgTTCGC‑GGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGc                                                                               >  5:308307‑M1/76‑142 (MQ=255)                                                                       catttacctggtcagtgagccgaacctgttctatgtgttcaagcagccgactgactgatcgcctgtcagggcctgTTCGC‑GGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGc                                                                               <  6:308307‑M1/67‑1 (MQ=255)                                                                        gcggcgcggcCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGGTAAACCC‑CGACGAAAAGGGTCCCCCCCCGCCGGGGACCGGGGCGCTCCCGGTTGGGGCGGGgtttc                                                                       >  1:152333/1‑147 (MQ=255)                                                                        gcggcgcggcCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTAc                                                                       <  5:58691/149‑1 (MQ=255)                                                                            cgcggcCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCcgc                                                                   <  8:84541/149‑1 (MQ=255)                                                                                             ctgctgctgGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAg                                                   <  1:266768/148‑1 (MQ=255)                                                                                              tgctgctgGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTTAACCCCCACCTAAAAAGTAACCCACCCGCCGGGAAACGGGGGGCTACCAGTTGGAGCGGGTTTTACCGCGCAAACGCCCCGACAGGc                                                 >  2:132076/1‑149 (MQ=255)                                                                                                ctgctgGGCACCGGTGAAGGCGGGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAg                                                   <  3:171496/145‑1 (MQ=255)                                                                                                ctgctgGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAACCCCTTCCC‑GGGTAAAACCCCAACAAAAAGGTAACCCACCCGCCGGGAACCCAGGCGGAACGAGTAGGGGCGGGTTTTCCCCCCAACAAGCCCGGACAggac                                                >  4:171496/1‑146 (MQ=255)                                                                                                   gtgGGCAGCGCTGCAGGCGGGAAGATCCTGATGGCCGAGTAATCCGCTTCGC‑GGGTAAACCCGCTCCTACACGGTACCCCACGGGCCTTCAACCGTGGCGATCCCTGTTGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGAtca                                            <  4:296314/148‑1 (MQ=37)                                                                                                     gggCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAAACCCCGCCTACAAGGTTCCCCCCCGGCCGGGCACCGTGGGGCTCCCCGTAGGAGCGGGGTTTCCCGCGCACACGCCCGGACAcgcgcaccgt                                          >  3:93576/1‑143 (MQ=255)                                                                                                     ggccACCGCGTAAGGCGTCAAGCGCCTTAAGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCGCTCCTACACGGTACCCCACCGGCCTGGAACCTTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGAtcagt                                          <  7:130924/146‑1 (MQ=38)                                                                                                       gCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTTAAACCGCTACTACAAGGTACCCCCCCCGCCTGGAACCGTGGCGATCCCGGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGCCAGGCGAtaagt                                          >  8:64236/1‑147 (MQ=255)                                                                                                                          gagCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTgg                                                                                               <  7:192273/75‑1 (MQ=255)                                                                                                                          gagCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTgg                                                                                               >  8:192273/1‑75 (MQ=255)                                                                                                                          gagCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACAt                     <  1:132076/149‑1 (MQ=255)                                                                                                                             ccTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGa                  <  4:93576/149‑1 (MQ=255)                                                                                                                             ccTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCCCACCAACAAGGTACCCCACCCGCCTGGAACCCTGGCGATACCAGTAGGAGCGGGTTTAACCGCGAACAGGCCCTGACAGGCGATAAGTCACTCGGCAGCTTGAAcacaaat                   >  6:271370/1‑145 (MQ=255)                                                                                                                                 aaGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACa               <  2:152333/148‑1 (MQ=255)                                                                                                                                             aaCCCTTCGC‑GGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCAc   <  3:338861/148‑1 (MQ=255)                                                                                                                                             aaCCCTTCGC‑GGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACt  <  5:271370/149‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                 AGATCACCAACCCGGTGGAGCTGGAAGCGCAGATCAACGCCATCGTCGGCGTGGTGACCAACGGCCTGTTCGCGGCGCGGCCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACT  >  NC_002947/5876839‑5877127

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.