New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5876984 =	40 (0.680)	4 (0.080)	4/210	NT	13.0%	intergenic (+6/+99)	rpiA/PP_5151	ribose‑5‑phosphate isomerase A/hypothetical protein
	?	NC_002947	5877066 =	21 (0.440)					intergenic (+88/+17)	rpiA/PP_5151	ribose‑5‑phosphate isomerase A/hypothetical protein

CTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGT‑AAATGGTCCCCGCTTCATCCATCGCAATCCCCTCCGCCTGCGGCACCGTCGCCTGCAACCCCTGGAAACCCTTGC  >  NC_002947/5876931‑5877210                                                                                                                                        |                                                                                                                                                  ctgctgctgGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAg                                                                                                                                       <  1:266768/148‑1 (MQ=255)  tgctgctgGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTTAACCCCCACCTAAAAAGTAACCCACCCGCCGGGAAACGGGGGGCTACCAGTTGGAGCGGGTTTTACCGCGCAAACGCCCCGACAGGc                                                                                                                                     >  2:132076/1‑149 (MQ=255)    ctgctgGGCACCGGTGAAGGCGGGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAg                                                                                                                                       <  3:171496/145‑1 (MQ=255)    ctgctgGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAACCCCTTCCCGGGTAAAACCCCAACAAAAAGGTAACCCACCCGCCGGGAACCCAGGCGGAACGAGTAGGGGCGGGTTTTCCCCCCAACAAGCCCGGACAggac                                                                                                                                    >  4:171496/1‑146 (MQ=255)       gtgGGCAGCGCTGCAGGCGGGAAGATCCTGATGGCCGAGTAATCCGCTTCGCGGGTAAACCCGCTCCTACACGGTACCCCACGGGCCTTCAACCGTGGCGATCCCTGTTGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGAtca                                                                                                                                <  4:296314/148‑1 (MQ=37)         gggCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAAACCCCGCCTACAAGGTTCCCCCCCGGCCGGGCACCGTGGGGCTCCCCGTAGGAGCGGGGTTTCCCGCGCACACGCCCGGACAcgcgcaccgt                                                                                                                              >  3:93576/1‑143 (MQ=255)         ggccACCGCGTAAGGCGTCAAGCGCCTTAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCGCTCCTACACGGTACCCCACCGGCCTGGAACCTTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGAtcagt                                                                                                                              <  7:130924/146‑1 (MQ=38)           gCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTTAAACCGCTACTACAAGGTACCCCCCCCGCCTGGAACCGTGGCGATCCCGGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGCCAGGCGAtaagt                                                                                                                              >  8:64236/1‑147 (MQ=255)                              gagCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACAt                                                                                                         <  1:132076/149‑1 (MQ=255)                                 ccTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGa                                                                                                      <  4:93576/149‑1 (MQ=255)                                 ccTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCCCACCAACAAGGTACCCCACCCGCCTGGAACCCTGGCGATACCAGTAGGAGCGGGTTTAACCGCGAACAGGCCCTGACAGGCGATAAGTCACTCGGCAGCTTGAAcacaaat                                                                                                       >  6:271370/1‑145 (MQ=255)                                     aaGGCCGAGTAAAACCCTTCGCGGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACa                                                                                                   <  2:152333/148‑1 (MQ=255)                                                 aaCCCTTCGCGGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCAc                                                                                       <  3:338861/148‑1 (MQ=255)                                                 aaCCCTTCGCGGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACt                                                                                      <  5:271370/149‑1 (MQ=255)                                                               AAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCTCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGAtcagtca                                                                                                                            <  1:165381‑M1/97‑1 (MQ=255)                                                               AAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCTCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGAtcagtca                                                                                                                            >  2:165381‑M1/1‑97 (MQ=255)                                                                 ACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGT‑AAATGGTc                                                                     <  2:102753‑M1/149‑1 (MQ=255)                                                                  CCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGT‑AAAt                                                                         <  7:102938‑M1/144‑1 (MQ=255)                                                                  CCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGT‑AAAt                                                                         >  8:102938‑M1/1‑144 (MQ=255)                                                                     gctcctacagggatcgccacggttccaggccggtggggtaccttgtaggagcgggtttacccgcgaaCAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGT‑AAATg                                                                        >  5:308307‑M2/68‑142 (MQ=255)                                                                     gctcctacagggatcgccacggttccaggccggtggggtaccttgtaggagcgggtttacccgcgaaCAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGT‑AAATg                                                                        <  6:308307‑M2/75‑1 (MQ=255)                                                                       tcctacagggatcgccacggttccaggccggtggggtaccttgtaggagcgggtttacccgcgaaCAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGT‑AAATGGTCCCCGCt                                                               >  3:178937‑M2/66‑149 (MQ=255)                                                                         caACAAGGTACCCCACCGGCCTGGAACCGTGGCGAACCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGT‑AAATGGTCCCCGCtt                                                              <  2:258633‑M1/146‑1 (MQ=255)                                                                          TACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGT‑AAATGGTCCCCGCTTCa                                                            <  2:268367‑M1/149‑1 (MQ=255)                                                                               ggatcgccacggttccaggccggtggggtaccttgtaggagcgggtttacccgcgaaCAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGT‑AAATGGTCCCCGCTTcatccat                                                       >  8:334570‑M2/58‑149 (MQ=255)                                                                                gTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGT‑AAATGGTCCCCGCTTcatccatc                                                      <  1:153769/149‑1 (MQ=255)                                                                                   ccccACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGT‑AAATGGTCCCCGCTTCATCCATCGc                                                    >  3:24375/1‑148 (MQ=255)                                                                                      cACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGT‑AAATGGTCCCCGCTTCATCCATCGCAATc                                                >  1:48869/1‑149 (MQ=255)                                                                                       aCCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGT‑AAATGGTCCCCGCTTCATCCATCGCAATcc                                               >  7:89873/1‑149 (MQ=255)                                                                                                taaCCGTGGCGATACCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGTCTGCTTGAACACATAGTTCAGGTTCGGCTCACTGACCAGGT‑AAATGGTGCCCGCTTCATCCATCGCAATCCCCTCCGc                                        <  5:134589/146‑1 (MQ=39)                                                                                                gAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGAtcagt                                                                                                                              >  3:92873/1‑62 (MQ=255)                                                                                                gAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGAtcagt                                                                                                                              <  4:92873/62‑1 (MQ=255)                                                                                                              ccTGAAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGT‑AAATGGTCCCCGCTTCATCCATCGCAATCCCCTCCGCCTGCGGCACCGTCGc                         <  3:270277/148‑1 (MQ=255)                                                                                                               cTGTAGGATCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAAATGGTCCCCGCTTCATCCATCGCAATc                                                <  1:22178/125‑1 (MQ=255)                                                                                                               cTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGT‑AAATGGTCCCTGCTTCATCCATCGCAATCCCCTCCGCCTGCGGCACCGTCGCCt                       <  1:258633/149‑1 (MQ=255)                                                                                                               cTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGT‑AAATGGTCCCCGCTTCATCCATCGCAATc                                                >  2:22178/1‑124 (MQ=255)                                                                                                               cTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGT‑AAATGGTCCCCGCTTCATCCATCGCAATCCCCTCCGCCTGCGGCACCGTCGCCt                       <  8:89873/149‑1 (MQ=255)                                                                                                                tgtaggagcgggtttacccgcgaaCAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGT‑AAATGGTCCCCGCTTCATCCATCGCAATCCCCTCCGCCTGCg                                   >  2:351770‑M2/25‑136 (MQ=255)                                                                                                                tgtaggagcgggtttacccgcgaaCAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGT‑AAATGGTCCCCGCTTCATCCATCGCAATCCCCTCCGCCTGCg                                   <  1:351770‑M2/112‑1 (MQ=255)                                                                                                                          ggtttacccgcgaaCAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGT‑AAATGGTCCCCGCTTCATCCATCGCAATCCCCTCCGCCTGCGGCACCGTCGCCTGCAACCCCTg             >  7:281594‑M2/15‑148 (MQ=255)                                                                                                                          ggtttaccagcgaaCAGGCCCTGACAGGCGATCAGTCAGTAGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACAAGGT‑AAATGGTCCCCGCTTCATCCATCGCAATCCCCTCCGCCTGCGGCACCTTCGCCAGCAACCCCTg             >  8:45506‑M2/15‑148 (MQ=255)                                                                                                                                  cgcgaaCAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGT‑AAATGGTCCCCGCTTCATCCATCGCAATCCCCTCCGCCTGCGGCACCGTCGCCTGCAACCCCTGGAAACCCtt    <  8:281594‑M2/143‑1 (MQ=255)                                                                                                                                    cgaaCAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGT‑AAATGGTCCCCGCTTCATCCATCGCAATCCCCTCCGCCTGCGGCACCGTCGCCTGCAACCCCTGGAAACCCTTgc  <  7:334570‑M2/145‑1 (MQ=255)                                                                                                                                        cAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGT‑AAATGGTCCCCGCTTCATCCATCGCAATCCCCTCCGCCTGCGGCACCGTCGCCTGCAACCCCTGGAAACCCTTgc  <  3:177154/145‑1 (MQ=255)                                                                                                                                        cAGGCACTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGT‑AAATGGTCCCCGCTTCATCCATCGCAATCCCCTCCGCCTGCGGCACCGTCGCCTGCAACCCCTGGAAACCCTTgc  >  4:177154/1‑145 (MQ=255)                                                                                                                                        |                                                                                                                                                  CTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGT‑AAATGGTCCCCGCTTCATCCATCGCAATCCCCTCCGCCTGCGGCACCGTCGCCTGCAACCCCTGGAAACCCTTGC  >  NC_002947/5876931‑5877210

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.