New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	599803 =	39 (0.660)	3 (0.060)	3/238	NT	8.6%	coding (241/408 nt)	PP_0512	hypothetical protein
	?	NC_002947	599853 =	28 (0.520)					coding (191/408 nt)	PP_0512	hypothetical protein

GCAGCGGGCCGGTGGCCTGGGTTTGTGCCTGGGTAATGCGCACCGGGGGCAGGTGCATGATCAGCTGGCCGGAGTTGCTGGCGCGGCCACGCAGTTCGACCCGGGCACCGGGCGGGAAGGCTTCGGGGTTGAAACGCAGGTGGTAGGGCAGCGCCTGGCCGGTACCGGTCAGGTTGCTGCTGGCCAGCAGGCGCTGCGGGCGGTCGCGTTCGTCGATCACCAGCAAGGCCAGTTCCACCTCGGCACCCGCCGGGATTTCCAGCAAGGTGCCGCTCAGCTCGCGCTGGTAGGCCGG  >  NC_002947/599656‑599950                                                                                                                                                    |                                                                                                                                                    gCAGCGGGCCGGTGGCCTGGGTTTGTGCCTGGGTAATGCGCACCGGGGGCAGGTGCATGATCAGCTGGCCGGAGTTGCTGGCGCGGCCACGCAGTTCGACCCGGGCACCGGGCGGGAAGGCTTCGGGGTTGAAACGCAGGTGGTAggg                                                                                                                                                     >  2:319459/1‑148 (MQ=255)   aGCGGGCCGGTGGCCTGGGTTTGTGCCTGGGTAATGCGCACCGGGGGCAGGTGCATGATCAGCTGGCCGGAGTTGCTGGCGCGGCCACGCAGTTCGACCCGGGCACCGGGCGGGAAGGCTTCGGGGTTGAAACGCAGGTGGTAGGGCAg                                                                                                                                                  >  5:299878/1‑149 (MQ=255)    gcccgcgccagccccctcggccaaggccgaagtaccgggcccgttgccggcctaccagcgcgagctgagcggcaccttgctggaaatcccggcgggtgccgaggtggaactggccttgctggtgatcgacgaacgcgaccgcccGCAgc                                                                                                                                                 <  7:156384‑M1/5‑1 (MQ=255)      ccgcgccagccccctcggccaaggccgaagtaccgggtccgttgccggcctaccagcgcgagctgagcggcaccttgctggaaatcccggcgggtgccgaggtggaactggccttgctggtgatcgacgaacgcgaccgcccGCAgcgc                                                                                                                                               <  6:33142‑M1/7‑1 (MQ=255)         ccGGTGGCCTGGGTTTGTGCCTGGGTAATGCGCACCGGGGGCAGGTGCATGATCAGCTGGCCGGAGTTGCTGGCGCGGCCACGCAGTTCGACCCGGGCACCGGGCGGGAAGGCTTCGGGGTTGAAACGCAGGTGGTAGGGCAGCGCCTg                                                                                                                                            <  5:248860/149‑1 (MQ=255)          cGGTGGCCTGGGTTTGTGCCTGGGTAATGCGCACCGGGGGCAGGTGCATGATCAGCTGGCCGGAGTTGCTGGCGCGGCCACGCAGTTCGACCCGGGCACCGGGCGGGAAGGCTTCGGGGTTGAAACGCAGGTGGTAGGGCAGCGCCTgg                                                                                                                                           >  6:126013/1‑149 (MQ=255)            gTGGCCTGGGTTTGTGCCTGGGTAATGCGCACCGGGGGCAGGTGCATGATCAGCTGGCCGGAGTTGCTGGCGCGGCCACGCAGTTCGACCCGGGCACCGGGCGGGAAGGCTTCGGGGTTGAAACGCAGGTGGTAGGGCAGCGCCTGGcc                                                                                                                                         >  2:213326/1‑149 (MQ=255)            gTGGCCTGGGTTTGTGCCTGGGTAATGCGCACCGGGGGCAGGTGCATGATCAGCTGGCCGGAGTTGCTGGCGCGGCCACGCAGTTCGACCCGGGCACCGGGCGGGAAGGCTTCGGGGTTGAAACGCAGGTGGTAGGGCAGCGCCTGGcc                                                                                                                                         >  6:276721/1‑149 (MQ=255)             tGGCCTGGGTTTGTGCCTGGGTAATGCGCACCGGGGGCAGGTGCATGATCAGCTGGCCGGAGTTGCTGGCGCGGCCACGCAGTTCGACCCGGGCACCGGGCGGGAAGGCTTCGGGGTTGAAACGCAGGTGGTAGGGCAGCGCCTGGCCg                                                                                                                                        <  6:290176/149‑1 (MQ=255)               gCCTGGGTTTGTGCCTGGGTAATGCGCACCGGGGGCAGGTGCATGATCAGCTGGCCGGAGTTGCTGGCGCGGCCACGCAGTTCGACCCGGGCACCGGGCGGGAAGGCTTCGGGGTTGAAACGCAGGTGGTAGGGCAGCGCCTGGCCgg                                                                                                                                       <  8:188545/148‑1 (MQ=255)               gCCTGGGTTTGTGCCTGGGTAATGCGCACCGGGGGCAGGTGCATGATCAGCTGGCCGGAGTTGCTGGCGCGGCCACGCAGTTCGACCCGGGCACCGGGCGGGAAGGCTTCGGGGTTGAAACGCAGGTGGTAGGGCAGCGCCTGGCCgg                                                                                                                                       <  6:299878/148‑1 (MQ=255)                ccTGGGTTTGTGCCTGGGTAATGCGCACCGGGGGCAGGTGCATGATCAGCTGGCCGGAGTTGCTGGCGCGGCCACGCAGTTCGACCCGGGCACCGGGCGGGAAGGCTTCGGGGTTGAAACGCAGGTGGTAGGGCAGCGCCTGGCCGGTa                                                                                                                                     <  8:258061/149‑1 (MQ=255)                         gtgCCTGGGTAATGCGCACCGGGGGCAGGTGCATGATCAGCTGGCCGGAGTTGCTGGCGCGGCCACGCAGTTCGACCCGGGCACCGGGCGGGAAGGCTTCGGGGTTGAAACGCAGGTGGTAGGGCAGCGCCTGGCCGGTACCGGTCAg                                                                                                                             <  3:71315/148‑1 (MQ=255)                             cTGGGTAATGCGCACCGGGGGCAGGTGCATGATCAGCTGGCCGGAGTTGCTGGCGCGGCCACGCAGTTCGACCCGGGCACCGGGCGGGAAGGCTTCGGGGTTGAAACGCAGGTGGTAGGGCAGCGCCTGGCCGGTACCGGTCAGGTtgc                                                                                                                        >  3:287425/1‑149 (MQ=255)                                                ggCAGGTGCATGATCAGCTGGCCGGAGTTGCTGGCGCGGCCACGCAGTTCGACCCGGGCACCGGGCGGGAAGGCTTCGGGGTTGAAACGCAGGTGGTAGGGCAGCGCCTGGCCGGTACCGGTCAGGTTGCTGCTGGCCAGCAGGCGCTg                                                                                                     <  1:201182/149‑1 (MQ=255)                                                ggCAGGTGCATGATCAGCTGGCCGGAGTTGCTGGCGCGGCCACGCAGTTCGACCCGGGCACCGGGCGGGAAGGCTTCGGGGTTGAAACGCAGGTGGTAGGGCAGCGCCTGGCCGGTACCGGTCAGGTTGCTGCTGGCCAGCAGGCGCTg                                                                                                     >  6:58764/1‑149 (MQ=255)                                                 gccggcctaccagcgcgagctgagcggcaccttgctggaaatcccggcgggtgccgaggtggaactggccttgctggtgatcgacgaacgcgaccgcccGCAGCGCCTGGCCGGTACCGGTCAGGTTGCTGCTGGCCAGCAGGCGCTg                                                                                                     >  8:156384‑M1/100‑148 (MQ=255)                                                 cccggTGCATGATCAGCTGGCCGGAGTTGCTGGCGCGGCCACGCAGTTCGACCCGGGCACCGGGCGGGAAGGCTTCGGGGTTGAAACGCAGGTGGTAGGGCAGCGCCTGGCCGGTACCGGTCAGGTTGCTGCTGGCCAGCAGGCGCTgc                                                                                                    <  8:272564/146‑1 (MQ=255)                                                   cggcctaccagcgcgagctgagcggcaccttgctggaaatcccggcgggtgccgaggtggaactggccttgctggtgatcgacgaacgcgaccgcccGCAGCGCCTGGCCGGTACCGGTCAGGTTGCTGCTGGCCAGCAGGCGCTgc                                                                                                    <  5:285855‑M1/50‑1 (MQ=255)                                                   cggcctaccagcgcgagctgagcggcaccttgctggaaatcccggcgggtgccgaggtggaactggccttgctggtgatcgacgaacgcgaccgcccGCAGCGCCTGGCCGGTACCGGTCAGGTTGCTGCTGGCCAGCAGGCGCTgc                                                                                                    >  6:285855‑M1/98‑147 (MQ=255)                                                         aTGTTCAGCGGGCGGGAGTTGCTGGCGCGGCCACGCAGTTCGACCCGGGCACCGGGCGGGAAGGCTTCGGGGTTGAAACGCAGGTGGTAGGGCAGCGCCTGGCCGGTACCGGTCAGGTTGCTGCTGGCCAGCAGGCGCTGCGGGCGGTc                                                                                            <  6:86196/149‑1 (MQ=255)                                                          tGATCAGCTGGCCGGAGTTGCTGGCGCGGCCACGCAGTTCGACCCGGGCACCGGGCGGGAAGGCTTCGGGGTTGAAACGGAGGTGGTAGGGCAGCGCCTGGCCGGTACCGGTGAGGTTGCTGCTGGCCAGCAGGCGCTgcggggggggg                                                                                           >  4:281461/1‑146 (MQ=255)                                                            aTCAGCTGGCCGGAGTTGCTGGCGCGGCCACGCAGTTCGACCCGGGCACCGGGCGGGAAGGCTTCGGGGTTGAAACGCAGGTGGTAGGGCAGCGCCTGGCCGGTACCGGTCAGGTTGCTGCTGGCCAGCAGGCGCTGCGGGCGGTcgcg                                                                                         <  1:319459/149‑1 (MQ=255)                                                            aTCAGCTGGCCGGAGTTGCTGGCGCGGCCACGCAGTTCGACCCGGGCACCGGGCGGGAAGGCTTCGGGGTTGAAACGCAGGTGGTAGGGCAGCGCCTGGCCGGTACCGGTCAGGTTGCTGCTGGCCAGCAGGCGCTGCGGGCGGTcgcg                                                                                         >  6:7208/1‑149 (MQ=255)                                                                 cTGGCCGGAGTTGCTGGCGCGGCCACGCAGTTCGCCCCGGGCACCGGGCGGGAAGGCTTCGGGGTTGAAACGCAGGTGGTAGGGCAGCGCCTGGCCGGTACCGGGCAGGTTGCTGCTGGCCAGCAGGCGCTGCGGGCGGTCGCGTtcgt                                                                                    <  5:276721/149‑1 (MQ=255)                                                                    gCCGGAGTTGCTGGCGCGGCCACGCAGTTCGACCCGGGCACCGGGCGGGAAGGCTTCGGGGTTGAAACGCAGGTGGTAGGGCAGCGCCTGGCCGGTAc                                                                                                                                    <  8:29527/98‑1 (MQ=255)                                                                    gCCGGAGTTGCTGGCGCGGCCACGCAGTTCGACCCGGGCACCGGGCGGGAAGGCTTCGGGGTTGAAACGCAGGTGGTAGGGCAGCGCCTGGCCGGTAc                                                                                                                                    >  7:29527/1‑98 (MQ=255)                                                                          gTTGCTGGCGCGGCCACGCAGTTCGACCCGGGCACCGGGCGGGAAGGCTTCGGGGTTGAAACGCAGGTGGTAGGGCAGCGCCTGGCCGGTACCGGTCAGGTTGCTGCTGGCCAGCAGGCGCTGCGGGCGGTCGCGTTCGTCGATCACCa                                                                           <  3:281461/149‑1 (MQ=255)                                                                                        cACGCAGTTCGACCCGGGCACCGGGCGGGAAGGCTTCGGGGTTGAAGCGCAGGTGGTAGGGCAGCGCCTGGCCGGTACCGGTCAGGTTGCTGCTGGCCAGCAGGCGCTGCGGGCGGTCGCGTTCGTCGATCACCAGc                                                                         <  2:351202/137‑1 (MQ=255)                                                                                        cACGCAGTTCGACCCGGGCACCGGGCGGGAAGGCTTCGGGGTTGAAGCGCAGGTGGTAGGGCAGCGCCTGGCCGGTACCGGTCAGGTTGCTGCTGGCCAGCAGGCGCTGCGGGCGGTCGCGTTCGTCGATCACCAGc                                                                         >  1:351202/1‑137 (MQ=255)                                                                                        cACGCAGTTCGACCCGGGCACCGGGCGGGAAGGCTTCGGGGTTGAAACGCAGGTGGTAGGGCAGCGCCTGGCCGGTACCGGTCAGGTTGCTGCTGGCCAGCAGGCGCTGCGGGCGGTCGCGTTCGTCGATCACCAGCAAGGCCAGTTc                                                              >  5:249962/1‑148 (MQ=255)                                                                                                   aCCCGGGCACCGGGCGGGAAGGCTTCGGGGTTGAAACGCAGGTGGTAGGGCAGCGCCTGGCCGGTACCGGTCAGGTTGCTGCTGGCCAGCAGGCGCCGCGGGCGGTCGCGt                                                                                        >  8:128644/1‑111 (MQ=255)                                                                                                   aCCCGGGCACCGGGCGGGAAGGCTTCGGGGTTGAAACGCAGGTGGTAGGGCAGCGCCTGGCCGGTACCGGTCAGGTTGCTGCTGGCCAGCAGGCGCCGCGGGCGGTCGCGt                                                                                        <  7:128644/111‑1 (MQ=255)                                                                                                        ggCACCGGGCGGGAAGGCTTCGGGGTTGAAACGCAGGTGGTAGGGCAGCGCCTGGCCGGTACCGGTCAGGTTGCTGCTGGCCAGCAGGCGCTGCGGGCGGTCGCGTTCGTCGATCACCAGCAAGGCCAGTTCCACCTCGGCACccgccg                                             <  5:58764/149‑1 (MQ=255)                                                                                                         gCACCGGGCGGGAAGGCTTCGGGGTTGAAACGCAGGTGGTAGGGCAGCGCCTGGCCGGTACCGGTCAGGTTGCTGCTGGCCAGCAGGCGCTGCGGGCGGTCGCGTTCGTCGATCACCAGCAAGGCCAGTTCCACCTCGGCACCCGCCgg                                            <  5:126013/149‑1 (MQ=255)                                                                                                           aCCGGGCGGGAAGGCTTCGGGGTTGAAACGCAGGTGGTAGGGCAGCGCCTGGCCGGTACCGGTCAGGTTGCTGCTGGCca                                                                                                               <  3:40034/80‑1 (MQ=255)                                                                                                           aCCGGGCGGGAAGGCTTCGGGGTTGAAACGCAGGTGGTAGGGCAGCGCCTGGCCGGTACCGGTCAGGTTGCTGCTGGCca                                                                                                               >  4:40034/1‑80 (MQ=255)                                                                                                                 cgggAAGGCTTCGGGGTTGAAACGCAGGTGGTAGGGCAGCGCCTGGCCGGTACCGGTCAGGTTGCTGCTGGCCAGCAGGCGCTGCGGGCGGTCGCGTTCGTCGATCACCAGCAAGGCCAGTTCCACCTCGGCACCCGCCGGGATTTCCa                                    <  5:7208/149‑1 (MQ=255)                                                                                                                 cgggAAGGCTTCGGGGTTGAAACGCAGGTGGTAGGGCAGCGCCTGGCCGGTACCGGTCAGGTTGCTGCTGGCCAGCAGGCGCTGCGGGCGGTCGCGTTCGTCGATCACCAGCAAGGCCAGTTCCACCTCGGCACCCGCCGGGATTTCCa                                    <  4:287425/149‑1 (MQ=255)                                                                                                                       ggCTTCGGGGTTGAAACGCAGGTGGTAGGGCAGCGCCTGGCCGGTACCGGTCAGGTTGCTGCTGGCCAGCAGGCGCTGCGGGCGGTCGCGTTCGTCGAt                                                                                <  8:315886/99‑1 (MQ=255)                                                                                                                       ggCTTCGGGGTTGAAACGCAGGTGGTAGGGCAGCGCCTGGCCGGTACCGGTCAGGTTGCTGCTGGCCAGCAGGCGCTGCGGGCGGTCGCGTTCGTCGAt                                                                                >  7:315886/1‑99 (MQ=255)                                                                                                                              gggTTGAAACGCAGGTGGTAGGGCAGCGCCTGGCCGGTACCGGTCAGGTTGCTGCTGGCCAGCAGGCGCTGCGGGCGGTCGCGTTCGTCGATCACCAGCAAGGCCAGTTCCACCTCGGCACCCGCCGGGATTTCCAGCAAGGTGCCGCt                       <  1:213326/149‑1 (MQ=255)                                                                                                                                    aaaCGCAGGTGGTAGGGCAGCGCCTGGCCGGTACCGGTCAGGTTGCTGCTGGCCAGCAGGCGCTGCGGGCGGTCGCGTTCGTCGATCACCAGCAAGGCCAGTTCCACCTCGGCACCCGCCGGGATTTCCAGCAAGGTGCCGCTCAGCTc                 <  2:87853/149‑1 (MQ=255)                                                                                                                                    aaaCGCAGGTGGTAGGGCAGCGCCTGGCCGGTACCGGTCAGGTTGCTGCTGGCCAGCAGGCGCTGCGGGCGGTCGCGTTCGTCGATCACCAGCAAGGCCAGTTCCACCTCGGCACCCGCCGGGATTTCCAGCAAGGTGCCGCTCAGCTc                 >  4:68020/1‑149 (MQ=255)                                                                                                                                         cAGGTGGTAGGGCAGCGCCTGGCCGGTACCGGTCAGGTTGCTGCTGGCCAGCAGGCGCTGCGGGCGGTCGCGTTCGTCGATCACCAGCAAGGCCAGTTCCACCTCGGCACCCGCCGGGATTTCCAGCAAGGTGCCGCTCAGCTCGCGCt            >  2:154298/1‑149 (MQ=255)                                                                                                                                             tggtAGGGCAGCGCCTGGCCGGTACCGGTCAGGTTGCTGCTGGCCAGCAGGCGCTGCGGGCGGTCGCGTTCGTCGATCACCAGCAAGGCCAGTTCCACCTCGGCACCCGCCGGGATTTCCAGCAAGGTGCCGCTCAGCTCGCGCTgg          >  1:1926/1‑147 (MQ=255)                                                                                                                                               gtAGGGCAGCGCCTGGCCGGTACCGGTCAGGTTGCTGCTGGCCAGCAGGCGCTGCGGGCGGTCGCGTTCGTCGATCACCAGCAAGGCCAGTTCCACCTCGGCACCCGCCGGGATTTCCAGCAAGGTGCCGCTCAGCTCGCGCTGGTAgg      >  6:377435/1‑149 (MQ=255)                                                                                                                                                 aGGGCAGCGCCTGGCCGGTACCGGTCAGGTTGCTGCTGGCCAGCAGGCGCTGCGGGCGGTCGCGTTCGTCGATCACCAGCAAGGCCAGTTCCACCTCGGCACCCGCCGGGATTTCCAGCAAGGTGCCGCTCAGCTCGCGCTGGTAGGcc    >  7:177556/1‑149 (MQ=255)                                                                                                                                                    GCAGCGCCTGGCTGGTACCGGTCAGGTTGCTGCTGGCCAGCAGGCGCTGCGGGCGGTCGCGTTCGTCGATCACCAGCAAGGCCAGTTCCACCTCGGCACCCGCCGGGATTTCCAGCAAGGTGCCGCTCAGCTCGCGCTGGTAGGCCgg  <  1:62928‑M1/148‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                    GCAGCGGGCCGGTGGCCTGGGTTTGTGCCTGGGTAATGCGCACCGGGGGCAGGTGCATGATCAGCTGGCCGGAGTTGCTGGCGCGGCCACGCAGTTCGACCCGGGCACCGGGCGGGAAGGCTTCGGGGTTGAAACGCAGGTGGTAGGGCAGCGCCTGGCCGGTACCGGTCAGGTTGCTGCTGGCCAGCAGGCGCTGCGGGCGGTCGCGTTCGTCGATCACCAGCAAGGCCAGTTCCACCTCGGCACCCGCCGGGATTTCCAGCAAGGTGCCGCTCAGCTCGCGCTGGTAGGCCGG  >  NC_002947/599656‑599950

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.