New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	599803 =	39 (0.660)	3 (0.060)	3/238	NT	8.6%	coding (241/408 nt)	PP_0512	hypothetical protein
	?	NC_002947	599853 =	28 (0.520)					coding (191/408 nt)	PP_0512	hypothetical protein

ATGATCAGCTGGCCGGAGTTGCTGGCGCGGCCACGCAGTTCGACCCGGGCACCGGGCGGGAAGGCTTCGGGGTTGAAACGCAGGTGGTAGGGCAGCGCCTGGCCGGTACCGGTCAGGTTGCTGCTGGCCAGCAGGCGCTGCGGGCGGTCGCGTTCGTCGATCACCAGCAAGGCCAGTTCCACCTCGGCACCCGCCGGGATTTCCAGCAAGGTGCCGCTCAGCTCGCGCTGGTAGGCCGGCAACGGGCCCGGTACTTCGGCCTTGGCCGAGGGGGCTGGCGCGGGC  >  NC_002947/599712‑599996                                                                                                                                              |                                                                                                                                                aTGTTCAGCGGGCGGGAGTTGCTGGCGCGGCCACGCAGTTCGACCCGGGCACCGGGCGGGAAGGCTTCGGGGTTGAAACGCAGGTGGTAGGGCAGCGCCTGGCCGGTACCGGTCAGGTTGCTGCTGGCCAGCAGGCGCTGCGGGCGGTc                                                                                                                                          <  6:86196/149‑1 (MQ=255)  tGATCAGCTGGCCGGAGTTGCTGGCGCGGCCACGCAGTTCGACCCGGGCACCGGGCGGGAAGGCTTCGGGGTTGAAACGGAGGTGGTAGGGCAGCGCCTGGCCGGTACCGGTGAGGTTGCTGCTGGCCAGCAGGCGCTgcggggggggg                                                                                                                                         >  4:281461/1‑146 (MQ=255)    aTCAGCTGGCCGGAGTTGCTGGCGCGGCCACGCAGTTCGACCCGGGCACCGGGCGGGAAGGCTTCGGGGTTGAAACGCAGGTGGTAGGGCAGCGCCTGGCCGGTACCGGTCAGGTTGCTGCTGGCCAGCAGGCGCTGCGGGCGGTcgcg                                                                                                                                       >  6:7208/1‑149 (MQ=255)    aTCAGCTGGCCGGAGTTGCTGGCGCGGCCACGCAGTTCGACCCGGGCACCGGGCGGGAAGGCTTCGGGGTTGAAACGCAGGTGGTAGGGCAGCGCCTGGCCGGTACCGGTCAGGTTGCTGCTGGCCAGCAGGCGCTGCGGGCGGTcgcg                                                                                                                                       <  1:319459/149‑1 (MQ=255)         cTGGCCGGAGTTGCTGGCGCGGCCACGCAGTTCGCCCCGGGCACCGGGCGGGAAGGCTTCGGGGTTGAAACGCAGGTGGTAGGGCAGCGCCTGGCCGGTACCGGGCAGGTTGCTGCTGGCCAGCAGGCGCTGCGGGCGGTCGCGTtcgt                                                                                                                                  <  5:276721/149‑1 (MQ=255)                  gTTGCTGGCGCGGCCACGCAGTTCGACCCGGGCACCGGGCGGGAAGGCTTCGGGGTTGAAACGCAGGTGGTAGGGCAGCGCCTGGCCGGTACCGGTCAGGTTGCTGCTGGCCAGCAGGCGCTGCGGGCGGTCGCGTTCGTCGATCACCa                                                                                                                         <  3:281461/149‑1 (MQ=255)                                cACGCAGTTCGACCCGGGCACCGGGCGGGAAGGCTTCGGGGTTGAAGCGCAGGTGGTAGGGCAGCGCCTGGCCGGTACCGGTCAGGTTGCTGCTGGCCAGCAGGCGCTGCGGGCGGTCGCGTTCGTCGATCACCAGc                                                                                                                       >  1:351202/1‑137 (MQ=255)                                cACGCAGTTCGACCCGGGCACCGGGCGGGAAGGCTTCGGGGTTGAAGCGCAGGTGGTAGGGCAGCGCCTGGCCGGTACCGGTCAGGTTGCTGCTGGCCAGCAGGCGCTGCGGGCGGTCGCGTTCGTCGATCACCAGc                                                                                                                       <  2:351202/137‑1 (MQ=255)                                cACGCAGTTCGACCCGGGCACCGGGCGGGAAGGCTTCGGGGTTGAAACGCAGGTGGTAGGGCAGCGCCTGGCCGGTACCGGTCAGGTTGCTGCTGGCCAGCAGGCGCTGCGGGCGGTCGCGTTCGTCGATCACCAGCAAGGCCAGTTc                                                                                                            >  5:249962/1‑148 (MQ=255)                                           aCCCGGGCACCGGGCGGGAAGGCTTCGGGGTTGAAACGCAGGTGGTAGGGCAGCGCCTGGCCGGTACCGGTCAGGTTGCTGCTGGCCAGCAGGCGCCGCGGGCGGTCGCGt                                                                                                                                      >  8:128644/1‑111 (MQ=255)                                           aCCCGGGCACCGGGCGGGAAGGCTTCGGGGTTGAAACGCAGGTGGTAGGGCAGCGCCTGGCCGGTACCGGTCAGGTTGCTGCTGGCCAGCAGGCGCCGCGGGCGGTCGCGt                                                                                                                                      <  7:128644/111‑1 (MQ=255)                                                ggCACCGGGCGGGAAGGCTTCGGGGTTGAAACGCAGGTGGTAGGGCAGCGCCTGGCCGGTACCGGTCAGGTTGCTGCTGGCCAGCAGGCGCTGCGGGCGGTCGCGTTCGTCGATCACCAGCAAGGCCAGTTCCACCTCGGCACccgccg                                                                                           <  5:58764/149‑1 (MQ=255)                                                 gCACCGGGCGGGAAGGCTTCGGGGTTGAAACGCAGGTGGTAGGGCAGCGCCTGGCCGGTACCGGTCAGGTTGCTGCTGGCCAGCAGGCGCTGCGGGCGGTCGCGTTCGTCGATCACCAGCAAGGCCAGTTCCACCTCGGCACCCGCCgg                                                                                          <  5:126013/149‑1 (MQ=255)                                                         cgggAAGGCTTCGGGGTTGAAACGCAGGTGGTAGGGCAGCGCCTGGCCGGTACCGGTCAGGTTGCTGCTGGCCAGCAGGCGCTGCGGGCGGTCGCGTTCGTCGATCACCAGCAAGGCCAGTTCCACCTCGGCACCCGCCGGGATTTCCa                                                                                  <  4:287425/149‑1 (MQ=255)                                                         cgggAAGGCTTCGGGGTTGAAACGCAGGTGGTAGGGCAGCGCCTGGCCGGTACCGGTCAGGTTGCTGCTGGCCAGCAGGCGCTGCGGGCGGTCGCGTTCGTCGATCACCAGCAAGGCCAGTTCCACCTCGGCACCCGCCGGGATTTCCa                                                                                  <  5:7208/149‑1 (MQ=255)                                                               ggCTTCGGGGTTGAAACGCAGGTGGTAGGGCAGCGCCTGGCCGGTACCGGTCAGGTTGCTGCTGGCCAGCAGGCGCTGCGGGCGGTCGCGTTCGTCGAt                                                                                                                              >  7:315886/1‑99 (MQ=255)                                                               ggCTTCGGGGTTGAAACGCAGGTGGTAGGGCAGCGCCTGGCCGGTACCGGTCAGGTTGCTGCTGGCCAGCAGGCGCTGCGGGCGGTCGCGTTCGTCGAt                                                                                                                              <  8:315886/99‑1 (MQ=255)                                                                      gggTTGAAACGCAGGTGGTAGGGCAGCGCCTGGCCGGTACCGGTCAGGTTGCTGCTGGCCAGCAGGCGCTGCGGGCGGTCGCGTTCGTCGATCACCAGCAAGGCCAGTTCCACCTCGGCACCCGCCGGGATTTCCAGCAAGGTGCCGCt                                                                     <  1:213326/149‑1 (MQ=255)                                                                            aaaCGCAGGTGGTAGGGCAGCGCCTGGCCGGTACCGGTCAGGTTGCTGCTGGCCAGCAGGCGCTGCGGGCGGTCGCGTTCGTCGATCACCAGCAAGGCCAGTTCCACCTCGGCACCCGCCGGGATTTCCAGCAAGGTGCCGCTCAGCTc                                                               >  4:68020/1‑149 (MQ=255)                                                                            aaaCGCAGGTGGTAGGGCAGCGCCTGGCCGGTACCGGTCAGGTTGCTGCTGGCCAGCAGGCGCTGCGGGCGGTCGCGTTCGTCGATCACCAGCAAGGCCAGTTCCACCTCGGCACCCGCCGGGATTTCCAGCAAGGTGCCGCTCAGCTc                                                               <  2:87853/149‑1 (MQ=255)                                                                                 cAGGTGGTAGGGCAGCGCCTGGCCGGTACCGGTCAGGTTGCTGCTGGCCAGCAGGCGCTGCGGGCGGTCGCGTTCGTCGATCACCAGCAAGGCCAGTTCCACCTCGGCACCCGCCGGGATTTCCAGCAAGGTGCCGCTCAGCTCGCGCt                                                          >  2:154298/1‑149 (MQ=255)                                                                                     tggtAGGGCAGCGCCTGGCCGGTACCGGTCAGGTTGCTGCTGGCCAGCAGGCGCTGCGGGCGGTCGCGTTCGTCGATCACCAGCAAGGCCAGTTCCACCTCGGCACCCGCCGGGATTTCCAGCAAGGTGCCGCTCAGCTCGCGCTgg                                                        >  1:1926/1‑147 (MQ=255)                                                                                       gtAGGGCAGCGCCTGGCCGGTACCGGTCAGGTTGCTGCTGGCCAGCAGGCGCTGCGGGCGGTCGCGTTCGTCGATCACCAGCAAGGCCAGTTCCACCTCGGCACCCGCCGGGATTTCCAGCAAGGTGCCGCTCAGCTCGCGCTGGTAgg                                                    >  6:377435/1‑149 (MQ=255)                                                                                         aGGGCAGCGCCTGGCCGGTACCGGTCAGGTTGCTGCTGGCCAGCAGGCGCTGCGGGCGGTCGCGTTCGTCGATCACCAGCAAGGCCAGTTCCACCTCGGCACCCGCCGGGATTTCCAGCAAGGTGCCGCTCAGCTCGCGCTGGTAGGcc                                                  >  7:177556/1‑149 (MQ=255)                                                                                            gcagcgcctgctggccagcagcaacctgaccggtaccggccaggcgctgcGGGCGGTCGCGTTCGTCGATCACCAGCAAGGCCAGTTCCACCTCGGCACCCGCCGGGATTTCCAGCAAGGTGCCGCTCAGCTCGCGCTGGTAGGCCg                                                 >  6:285855‑M2/51‑147 (MQ=255)                                                                                            gcagcgcctgctggccagcagcaacctgaccggtaccggccaggcgctgcGGGCGGTCGCGTTCGTCGATCACCAGCAAGGCCAGTTCCACCTCGGCACCCGCCGGGATTTCCAGCAAGGTGCCGCTCAGCTCGCGCTGGTAGGCCg                                                 <  5:285855‑M2/97‑1 (MQ=255)                                                                                            GCAGCGCCTGGCTGGTACCGGTCAGGTTGCTGCTGGCCAGCAGGCGCTGCGGGCGGTCGCGTTCGTCGATCACCAGCAAGGCCAGTTCCACCTCGGCACCCGCCGGGATTTCCAGCAAGGTGCCGCTCAGCTCGCGCTGGTAGGCCgg                                                <  1:62928‑M1/148‑1 (MQ=255)                                                                                             cagcgcctgctggccagcagcaacctgaccggtaccggccaggcgctgcGGGCGGTCGCGTTCGTCGATCACCAGCAAGGCCAGTTCCACCTCGGCACCCGCCGGGATTTCCAGCAAGGTGCCGCTCAGCTCGCGCTGGTAGGCCGGc                                               >  8:156384‑M2/50‑148 (MQ=255)                                                                                              gcaaCCTGACCGGTACCGGCCAGGTTGCTGCTGGCCAGCAGGCGCTGCGGGCGGTCGCGTTCGTCGATCACCAGCAAGGCCAGTTCCACCTCGGCACCCGCCGGGATTTCCAGCAAGGTGCCGCTCAGCTCGCGCTGGTAGGCCGGCaa                                             <  8:184769‑M1/145‑1 (MQ=255)                                                                                               GCGCCTGGCCGGTACCGGTCAGGTTGCTGCTGGCCAGCAGGCGCTGCGGGCGGTCGCGTTCGTCGATCACCAGCAAGGCCAGTTCCACCTCGGCACCCGCCGGGATTTCCAg                                                                                 >  6:171692‑M1/1‑112 (MQ=255)                                                                                               GCGCCTGGCCGGTACCGGTCAGGTTGCTGCTGGCCAGCAGGCGCTGCGGGCGGTCGCGTTCGTCGATCACCAGCAAGGCCAGTTCCACCTCGGCACCCGCCGGGATTTCCAg                                                                                 <  5:171692‑M1/112‑1 (MQ=255)                                                                                                     GGCCGGTACCGGTCAGGTTGCTGCTGGCCAGCAGGCGCTGCGGGCGGTCGCGTTCGTCGATCACCAGCAAGGCCAGTTCCACCTCGGCACCCGCCGGGATTTCCAGCAAGGTGCCGCTCAGCTCGCGCTGGTAGGCCGGCAACGGGccc                                      >  1:154298‑M1/1‑149 (MQ=255)                                                                                                        cGGTACCGGTCAGGTTGCTGCTGGCCAGCAGGCGCTGCGGGCGGTCGCGTTCGTCGATCACCAGCAAGGCCAGTTCCACCTCGGCACCCGCCGGGATTTCCAGCAAGGTGCCGCTCAGCTCGCGCTGGTAGGCCGGCAACGGGCCCgg                                    >  4:181786/1‑148 (MQ=255)                                                                                                                gTCAGGTTGCTGCTGGCCAGCAGGCGCTGCGGGCGGTCGCGTTCGTCGATCACCAGCAAGGCCAGTTCCACCTCGGCACCCGCCGGGATTTCCAGCAAGGTGCCGCTCAGCTCGCGCTGGTAGGCCGGCAACGGGCCCGGTACTTCGGc                           >  5:211370/1‑149 (MQ=255)                                                                                                                gTCAGGTTGCTGCTGGCCAGCAGGCGCTGCGGGCGGTCGCGTTCGTCGATCACCAGCAAGGCCAGTTCCACCTCGGCACCCGCCGGGATTTCCAGCAAGGTGCCGCTCAGCTCGCGCTGGTAGGCCGGCAACGGACCCGGTACTTCGGc                           >  5:33142/1‑149 (MQ=255)                                                                                                                     gTTGCTGCTGGCCAGCAGGCGCTGCGGGCGGTCGCGTTCGTCGATCACCAGCAAGGCCAGTTCCACCTCGGCACCCGCCGGGATTTCCAGCAAGGTGCCGCTCAGCTCGCGCTGGTAGGCCGGCAACGGGCCCGGTACTTCGGCCTTgg                      >  8:16992/1‑149 (MQ=255)                                                                                                                               gCCAGCAGGCGCTGCGGGCGGTCGCGTTCGTCGATCACCAGCAAGGCCAGTTCCACCTCGGCACCCGCCGGGATTTCCAGCAAGGTGCCGCTCAGCTCGCGCTgg                                                        >  7:299973/1‑105 (MQ=255)                                                                                                                               gCCAGCAGGCGCTGCGGGCGGTCGCGTTCGTCGATCACCAGCAAGGCCAGTTCCACCTCGGCACCCGCCGGGATTTCCAGCAAGGTGCCGCTCAGCTCGCGCTgg                                                        <  8:299973/105‑1 (MQ=255)                                                                                                                               gCCAGCAGGCGCTGCGGGCGGTCGCGTTCGTCGATCACCAGCAAGGCCAGTTCCACCTCGGCACCCGCCGGGATTTCCAGCAAGGTGCCGCTCAGCTCGCGCTGGTAGGCCGGCAACGGGCCCGGTACTTCGGCCTTGGCCGAgggg              <  7:184769/147‑1 (MQ=255)                                                                                                                                       gcgctgcGGGCGGTCGCGTTCGTCGATCACCAGCAAGGCCAGTTCCACCTCGGCACCCGCCGGGATTTCCAGCAAGGTGCCGCTCAGCTCGCGCTGGTAGGCCGGCAACGGACCCGGTACTTCGGCCTTGGCCGAGGGGGCTGGCGCgg    <  6:33142‑M2/142‑1 (MQ=255)                                                                                                                                         gctgcGGGCGGTCGCGTTCGTCGATCACCAGCAAGGCCAGTTCCACCTCGGCACCCGCCGGGATTTCCAGCAAGGTGCCGCTCAGCTCGCGCTGGTAGGCCGGCAACGGGCCCGGTACTTCGGCCTTGGCCGAGGGGGCTGGCGCGGgc  <  7:156384‑M2/144‑1 (MQ=255)                                                                                                                                              |                                                                                                                                                ATGATCAGCTGGCCGGAGTTGCTGGCGCGGCCACGCAGTTCGACCCGGGCACCGGGCGGGAAGGCTTCGGGGTTGAAACGCAGGTGGTAGGGCAGCGCCTGGCCGGTACCGGTCAGGTTGCTGCTGGCCAGCAGGCGCTGCGGGCGGTCGCGTTCGTCGATCACCAGCAAGGCCAGTTCCACCTCGGCACCCGCCGGGATTTCCAGCAAGGTGCCGCTCAGCTCGCGCTGGTAGGCCGGCAACGGGCCCGGTACTTCGGCCTTGGCCGAGGGGGCTGGCGCGGGC  >  NC_002947/599712‑599996

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.