New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	866552 =	40 (0.680)	3 (0.050)	3/244	NT	7.1%	coding (5/474 nt)	PP_0748	hypothetical protein
	?	NC_002947	866595 =	41 (0.740)					coding (48/474 nt)	PP_0748	hypothetical protein

CACGACCGCAAGGCAAGCCCTGACCTCAAGGCCAACTATGTGGGCCTGCCTTGTGTCGATCGCTATATCTTCGGTTACGGCATGGACTACAAAGGTTACTGGCGCAACGCTAACGGCATCTTCGCCGTAAAGGGGCTGTAACCGTGCGCCAGCCTGCGTTCATCGACCAATCGCTGTTCGCCGGGCTGGCCGAAAAGGCCGCTGCCAACCCGCGCGGGCGGCAGCACCATAACTTTCACGCTATGGAAGAGCCCTGCCACCGCATGGCCGTCGGGCTGCAACCAAGCACCTA  >  NC_002947/866405‑866696                                                                                                                                                    |                                                                                                                                                 cACGACCGCAAGGCAAGCCCTGACCTCAAGGCCAACTATGTGGGCCTGCCTTGTGTCGATCGCTATATCTTCGGTTACGGCATGGACTACAAAGGTTACTGGCGCAACGCTAACGGCATCTTCGCCGTAAAGGGGCTGTAACCGTgcgc                                                                                                                                                 <  8:253549/149‑1 (MQ=255)  aggtttcagccttgtcggcgctcaaatggcgatgcggcggaatgtaggtgcttggttgcagcccgacggccatgcggtggcagggctcttccatagcgtgaaagttatggtgctgccgcccgcgcgggttggcagcggccttttcgGc                                                                                                                                                 <  2:209491‑M1/2‑1 (MQ=255)  aggtttcagccttgtcggcgctcaaatggcgatgcggcggaatgtaggtgcttggttgcagcccgacggccatgcggtggcagggctcttccatagcgtgaaagttatggtgctgccgcccgcgcgggttggcagcggccttttcgGc                                                                                                                                                 <  2:191993‑M1/2‑1 (MQ=255)   cGACCGCAAGGCAAGCCCTGACCTCAAGGCCAACTATGTGGGCCTGCCTTGTGTCGATCGCTATATCTTCGGTTACGGCATGGACTACAAAGGTTACTGGCGCAACGCTAACGGCATCTTCGCCGTAAAGGGGCTGTAACCGTgcgc                                                                                                                                                 >  7:2686/1‑147 (MQ=255)    gtttcagcattgtcggcgctcaattggcgatgctgcggaatgtaggtgcttggttgcagcccgacggccatgcggtggcagggctcttgaatagcgtgaaagttatggtgctgacgcccgcgcgggttggcagcggccttttctGCCAg                                                                                                                                              <  1:67339‑M1/5‑1 (MQ=255)    gACCGCAAGGCAAGCCCTGACCTCAAGGCCAACTATGTGGGCCTGCCTTGTGTCGATCGCTATATCTTCGGTTACGGCATGGACTACAAAGGTTACTGGCGCAACGCTAACGGCATCTTCGCCGTAAAGGGGCTGTAACCGTGCGCCAg                                                                                                                                              >  5:293379/1‑149 (MQ=255)     tttcagccttgtcggcgctcaaatggcgatgcggcggaatgtaggtgcttggttgcagcccgacggccatgcggtggcagggctcttccatagcgtgaaagttatggtgctgccgcccgcgcgggttggcagcggccttttcgGCCAGc                                                                                                                                             <  1:333349‑M1/6‑1 (MQ=255)     aCCGCAAGGCAAGCCCTGACCTCAAGGCCAACTATGTGGGCCTGCCTTGTGTCGATCGCTATATCTTCGGTTACGGCATGGACTACAAAGGTTACTGGCGCAACGCTAACGGCATCTTCGCCGTAAAGGGGCTGTAACCGTGCGCCAGc                                                                                                                                             <  3:137278/149‑1 (MQ=255)           aggcaagCCCTGACCTCAAGGCCAACTATGTGGGCCTGCCTTGTGTCGATCGCTATATCATCGGTTACGGCATGGACTACAAAGGTTACTGGCGCAACGCTAACGGCATCTTCGCCGTAAAGGGGCTGTAACCGTGCGCCAGCCTGCGt                                                                                                                                       <  3:59382/149‑1 (MQ=255)             gcaagCCCTGACCTCAAGGCCAACTATGTGGGCCTGCCTTGTGTCGATCGCTATATCTTCGGTTACGGCATGGACTACAAAGGTTACTGGCGCAACGCTAACGGCATCTTCGCCGTTAAGGGGCTGTAACCGTGCGCCAGCCTGCGTTc                                                                                                                                     <  2:261503/149‑1 (MQ=255)                agCCCTGACCTCAAGGCCAACTATGTGGGCCTTCCTCTTGTCGATCGCTATATCTTCGGTTACGGCATGGACTACAAAGGTTACTGGCGCAACGCTAACGGCATCTTCGCCGTAAAGGGGCTGTAACCGTGCGCCAGCCTGCGTTCATc                                                                                                                                  <  5:351861/149‑1 (MQ=255)                agCCCTGACCTCAAGGCCAACTATGTGGGCCTGCCTTGTGTCGATCGCTATATCTTCGGTTACGGCATGGACTACAAAGGTTACTGGCGCAACGCTAACGGCATCTTCGCCGTAAAGGGGCTGTAACCGTGCGCCAGCCTGCGTTCATc                                                                                                                                  <  2:67602/149‑1 (MQ=255)                  cccTGACCTCAAGGCCAACTATGTGGGCCTGCCTTGTGTCGATCGCTATATCTTCGGTTACGGCATGGACTACAAAGGTTACTGGCGCAACGCTAACGGCATCTTCGCCGTAAAGGGGCTGTAACCGTGCGCCAGCCTGCGTTCATCGa                                                                                                                                <  8:93517/149‑1 (MQ=255)                   ccTGACCTCAAGGCCAACTATGTGGGCCTGCCTTGTGTCGATCGCTATATCTTCGGTTACGGCATGGACTACAAAGGTTACTGGCGCAACGCTAACGGCATCTTCGCCGTAAAGGGGCTGTAACCGTGCGCCAGCCTGCGTTCATCGAc                                                                                                                               <  8:2686/149‑1 (MQ=255)                       aCCTCAAGGCCAACTATGTGGGCCTGCCTTGTGTCGATCGCTATATCTTCGGTTACGGCATGGACTACAAAGGTTACTGGCGCAACGCTAACGGCATCTTCGCCGTAAAGGGGCTGTAACCGTGCGCCAGCCTGCGTTCATCGACCAAt                                                                                                                           <  7:167008/149‑1 (MQ=255)                              ggCCAACTATGTGCGCCTGCCTTGTGTCGATCGCTATATCTTCGGTTACGGCATGGACTACAAAGGTTACTGGCGCAACGCTAACGGCATCTTCGCCTTAAAGGGCCTGTAAACGTGCGCAAGCCTGCGTTCATCGACCTATCGCTGt                                                                                                                     >  8:350120/1‑148 (MQ=255)                                          gggCCTGCCTTGTGTCGATCGCTATATCTTCGGTTACGGCATGGACTACAAAGGTTACTGGCGCAACGCTAACGGCATCTTCGCCGTAAAGGGGCTGTAACCGTGCGCCAGCCTGCGTTCATCGACCAATCGCTGTTc                                                                                                                   >  7:224865/1‑138 (MQ=255)                                          gggCCTGCCTTGTGTCGATCGCTATATCTTCGGTTACGGCATGGACTACAAAGGTTACTGGCGCAACGCTAACGGCATCTTCGCCGTAAAGGGGCTGTAACCGTGCGCCAGCCTGCGTTCATCGACCAATCGCTGTTc                                                                                                                   <  8:224865/138‑1 (MQ=255)                                                  ctTGTGTCGATCGCTATATCTTCGGTTACGGCATGGACTACAAAGGTTACTGGCGCAACGCTAACGGCATCTTCGCCGTAAAGGGGCTGTAACCGTGCGCCAGCCTGCGTTCATCGACCAATCGCTGTTCGCCGGGCTGGCCGAAAAgg                                                                                                <  6:293379/149‑1 (MQ=255)                                                       gtCGATCGCTATATCTTCGGTTACGGCATGGACTACAAAGGTTACTGGCGCAACGCTAACGGCATCTTCGCCGTAAAGGGGCTGTAACCGTGCGCCAGCCTGCGTTCATCGACCAATCGCTGTTCGCCGGGCTgg                                                                                                         <  1:162799/135‑1 (MQ=255)                                                       gtCGATCGCTATATCTTCGGTTACGGCATGGACTACAAAGGTTACTGGCGCAACGCTAACGGCATCTTCGCCGTAAAGGGGCTGTAACCGTGCGCCAGCCTGCGTTCATCGACCAATCGCTGTTCGCCGGGCTgg                                                                                                         >  2:162799/1‑135 (MQ=255)                                                       ggttgcagccagacggccatgaggtggaagggctcttccatagcgtgaaagttatggtgctgccgcccgcgcggcttggcagcggccttttcggac                                                                                                                                                <  2:28035‑M1/3‑3 (MQ=255)                                                              gCTATATCTTCGGTTACGGCATGGACTACAAAGGTTACTGGCGCAACGCTAACGGCATCTTCGCCGTAAAGGGGCTGTAACCGTGCGCCAGCCTGCGTTCATCGACCAATCGCTGTTCGCCGGGCTGGCCGAAAAGGCCGCTGCCAAc                                                                                     <  7:350120/148‑1 (MQ=255)                                                                               ggCATGGACTACAAAGGTTACTGGCGCAACGCTAACGGCATCTTCGCCGTAAAGGGGCTGTAACCGTGCGCCAGCCTGCGTTCATCGACCAATCg                                                                                                                         >  6:114872/1‑95 (MQ=255)                                                                               ggCATGGACTACAAAGGTTACTGGCGCAACGCTAACGGCATCTTCGCCGTAAAGGGGCTGTAACCGTGCGCCAGCCTGCGTTCATCGACCAATCg                                                                                                                         <  5:114872/95‑1 (MQ=255)                                                                               ggCATGGACTACAAAGGTTACTGGCGCAACGCTAACGGCATCTTCGCCGTAAAGGGGCTGTAACCGTGCGCCAGCCTGCGTTCATCGACCAATCGCTGTTCGCCGGGCTGGCCGAAAAGGCCGCTGCCAACCCGCGCGGGCGGCAGCAc                                                                   <  7:263516/149‑1 (MQ=255)                                                                               ggCATGGACTACAAAGGTTACTGGCGCAACGCTAACGGCATCTTCGCCGTAAAGGGGCTGTAACCGTGCGCCAGCCTGCGTGCATCGACCAATCGCTGTTCGCCGGGCTGGCCGAAAAGGCCGCTGCCAACCCGCGCGGGCGGCAGCAc                                                                   <  7:258629/149‑1 (MQ=255)                                                                                        tcttccatagcgtgaaagttatggtgctgccgcccgcgcgggttggcagcggccttttcgGCCAGCCTGCGTTCATCGACCAATCGCTGTTCGCCGGGCTGGcc                                                                                                       <  6:154601‑M1/44‑1 (MQ=255)                                                                                        tcttccatagcgtgaaagttatggtgctgccgcccgcgcgggttggcagcggccttttcgGCCAGCCTGCGTTCATCGACCAATCGCTGTTCGCCGGGCTGGcc                                                                                                       >  5:154601‑M1/61‑104 (MQ=255)                                                                                        tACAAAGGTTACTGGCGCAACGCTAACGGCATCTTCGCCGTAAAGGGGCTGTAACCGTGCGCCAGCCTGCGTTCATCGACCAATCGCTGTTCGCCGGGCTGGCCGAAAAGGCCGCTGCCAACCCGCGCGGGCGGCAGCACCATAACttt                                                          >  5:171867/1‑149 (MQ=255)                                                                                          cAAAGGTTACTGGCGCAACGCTAACGGCATCTTCGCCGTAAAGGGGCTGTAACCGTGCGCCAGCCTGCGTTCATCGACCAATCGCTGTTCGCCGGGCTGGCCGAAAAGGCCGCTGCCAACCCGCGCGGGCGGCAGCACCATAACTTTCa                                                        >  1:178049/1‑149 (MQ=255)                                                                                           aaaGGTTACTGGCGCAACGCTAACGGCATCTTCGCCGTAAAGGGGCTGTAACCGTGCGCCAGCCTGCGTTCATCGACCAATCGCTGTTCGCCGGGCTGGCCGAAAAGGCCGCTGCCAACCCGCGCGGGCGGCAGCACCATAACTTTCAc                                                       <  2:100111/149‑1 (MQ=255)                                                                                                  aCTGGCGCAACGCTAACGGCATCTTCGCCGTAAAGGGGCTGTAACCGTGCGCCAGCCTGCGTTCATCGACCAATCGCTGTTCGCCGGGCTGGCCGAAAAGGCCGCTGCCAACCCGCGCGGGCGGCAGCACCATAACTTTCACGCTATg                                                 >  2:207886/1‑148 (MQ=255)                                                                                                   gtgaaagttatggtgctgccgcccgcgcgggttggcagcggccttttcgGCCAGCCTGCGTTCATCGACCAATCGCTGTTCGCCGGGCTGGCCGAAAAGGCCg                                                                                             >  7:333069‑M1/50‑103 (MQ=255)                                                                                                           aCGCTAACGGCATCTTCGCCGTAAAGGGGCTGTAACCGTGCGCCAGCCTGCGTTCATCGACCAATCGCTGTTCGCCGGGCTGGCCGAAAAGGCCGCTGCCAACCCGCGCGGGCGGCAGCACCATAACATTCACGCTATGGAAGAGCCCt                                       >  6:242852/1‑149 (MQ=255)                                                                                                             gCTAACGGCATCTTCGCCGTAAAGGGGCTGTAACCGTGCGCCAGCCTGCGTTCATCGACCAATCGCTGTTCGCCGGGCTGGCCGAAAAGGCCGCTGCCAACCCGCGCGGGCGGCAGCACCATAACTTTCACGCTATGGAAGAGCCCTGc                                     <  8:96455/149‑1 (MQ=255)                                                                                                               tAACGGCATCTTCGCCGTAAAGGGGCTGTAACCGTGCGCCAGCCTGCGTTCATCGACCAATCGCTGTTCGCCGGGCTGGCCGAAAAGGCCGCTGCCAACCCGCGCGGGCGGCAGCACCATAACTTTCACGCTATGGAAGAGCCCTGCCa                                   >  1:226173/1‑149 (MQ=255)                                                                                                               tAACGGCATCTTCGCCGTAAAGGGGCTGTAACCGTGCGCCAGCCTGCGTTCATCGACCAATCGCTGATCGCCGGGCTCGCCGAAAAGGCCGCTGCCAACCCGCGCGGGCGGCAGCACCATAACTTTCACGCTATGGAAGAGCCCTGCCa                                   >  1:118440/1‑149 (MQ=255)                                                                                                                         ttCGCCGTAAAGGGGCTGTAACCGTGCGCCAGCCTGCGTTCATCGACCAATCGCTGTTCGCCGGGCTGGCCGAAAAGGCCGCTGCCAACCCGCGCGGGCGGCAGCACCATAACTTTCACGc                                                     <  3:200557/121‑1 (MQ=255)                                                                                                                         ttCGCCGTAAAGGGGCTGTAACCGTGCGCCAGCCTGCGTTCATCGACCAATCGCTGTTCGCCGGGCTGGCCGAAAAGGCCGCTGCCAACCCGCGCGGGCGGCAGCACCATAACTTTCACGc                                                     >  4:200557/1‑121 (MQ=255)                                                                                                                         ttCGCCGTAAAGGGGCTGTAACCGTGCGCCAGCCTGCGTTCATCGACCAATCGCTGTTCGCCGGGCTGGCCGAAAAGGCCGCTGCCAACCCGCGCGGGCGGCAGCACCATAACTTTCACGCTATGGAAGAGCCCTGCCACCGCATGGcc                         >  1:175732/1‑149 (MQ=255)                                                                                                                           cGCCGTAAAGGGGCTGTAACCGTGCGCCAGCCTGCGTTCATCGACCAATCGCTGTTCGCCGGGCTGGCCGAAAAGGCCGCTGCCAACCCGCGCGGGCGGCAGCACCATAACTTTCACGCTATGGAAGAGCCCTGCCACCGCATgg                           <  1:44620/145‑1 (MQ=255)                                                                                                                           cGCCGTAAAGGGGCTGTAACCGTGCGCCAGCCTGCGTTCATCGACCAATCGCTGTTCGCCGGGCTGGCCGAAAAGGCCGCTGCCAACCCGCGCGGGCGGCAGCACCATAACTTTCACGCTATGGAAGAGCCCTGCCACCGCATGGCCGt                       >  3:93049/1‑149 (MQ=255)                                                                                                                            gCCGTAAAGGGGCTGTAACCGTGCGCCAGCCTGCGTTCATCGACCAATCGCTGTTCGCCGGGCTGGCCGAAAAGGCCGCTGCCAACCCGCGCGGGCGGCAGCACCATAACTTTCACGCTATGGAAGAGCCCTGCAACCGCATGGCCGTc                      >  7:181935/1‑149 (MQ=255)                                                                                                                             ccGTAAAGGGGCTGTAACCGTGCGCCAGCCTGCGTTCATCGACCAATCGCTGTTCGCCGGGCTGGCCGAAAAGGCCGCTGCCAACCCGCGCGGGCGGCAGCACCATAACTTTCACGCTATCGAAGAGCCCTGCCACCGCATGGCCGTCg                     <  1:207886/149‑1 (MQ=255)                                                                                                                             ccGTAAAGGGGCTGTAACCGTGCGCCAGCCAGCGTTCATCGACCAATCGCTGTTCGCCGGGCTGGCCGAAAAGGCCGCTGCCACCCCGCGCGGGCGGCAGCACCATAACTTTCACGCTATGGAAGAGCCCTGCCACCGCATGGCCGTCg                     >  1:28170/1‑149 (MQ=255)                                                                                                                                        cTGTAACCGTGCGCCAGCCTGCGTTCATCGACCAATCGCTGTTCGCCGGGCTGGCCGAAAAGGCCGCTGCCAACCCGCGCGGGCGGCAGCACCATAACTTTCACGCTATGGAAGAGCCCTGCCACCGCATGGCCGTCGGGCTGCAAcc           >  2:104539/1‑148 (MQ=255)                                                                                                                                         tGTAACCGTGCGCCAGCCTGCGTTCATCGACCAATCGCTGTTCGCCGGGCTGGCCGAAAAGGCCGCTGCCAACCCGCGCGGGCGGCAGCACCATAACTTTCACGCTATGGAAGAGCCCTGCCACCGCATGGCCGTCGGGCTGCAAcc           >  3:130391/1‑147 (MQ=255)                                                                                                                                         tGTAACCGTGCGCCAGCCTGCGTTCATCGACCAATCGCTGTTCGCCGGGCTGGCCGAAAAGGCCGCTGCCAACCCGCGCGGGCGGCAGCACCATAACTTTCACGCTATGGAAGAGCCCTGCCACCGCATGGCCGTCGGGCTGCAACCaa         >  4:145916/1‑149 (MQ=255)                                                                                                                                           tAACCGTGCGCCAGCCTGCGTTCATCGACCAATCGCTGTTCGCCGGGCTGGCCGAAAAGGCCGCTGCCAACCCGCGCGGGCGGCAGCACCATAACTTTCACGCTATGGAAGAGCCCTGCCACCGCATGGCCGTCGGGCTGCAACCAAg        >  1:261225/1‑148 (MQ=255)                                                                                                                                             aCCGTGCGCCAGCCTGCGTTCATCGACCAATCGCTGTTCGCCGGGCTGGCCGAAAAGGCCGCTGCCAACCCGCGCGGGCGGCAGCACCATAACTTTCACGCTATGGAAGAGCCCTGCCACCGCATGGCCGTCGGGCTGCAACCAAGCAc     >  1:191993/1‑149 (MQ=255)                                                                                                                                               cGTGCGCCAGCCTGCGTTCATCGACCAATCGCTGTTCGCCGGGCTGGCCGAAAAGGCCGCTGCCAACCCGCGCGGGCGGCAGCACCATAACTTTCACGCTATGGAAGAGCCCTGCCACCGCATGGCCGTCGGGCTGCAACCAAGCACCt   <  2:261225/149‑1 (MQ=255)                                                                                                                                                gTGCGCCAGCCTGCGTTCATCGACCAATCGCTGTTCGCCGGGCTGGCCGAAAAGGCCGCTGCCAACCCGCGCGGGCGGCAGCACCATAACTTTCACGCTATGGAAGAGCCCTGCCACCGCATGGCCGTCGGGCTGCAACCAAGCACCTa  >  1:270874/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                 CACGACCGCAAGGCAAGCCCTGACCTCAAGGCCAACTATGTGGGCCTGCCTTGTGTCGATCGCTATATCTTCGGTTACGGCATGGACTACAAAGGTTACTGGCGCAACGCTAACGGCATCTTCGCCGTAAAGGGGCTGTAACCGTGCGCCAGCCTGCGTTCATCGACCAATCGCTGTTCGCCGGGCTGGCCGAAAAGGCCGCTGCCAACCCGCGCGGGCGGCAGCACCATAACTTTCACGCTATGGAAGAGCCCTGCCACCGCATGGCCGTCGGGCTGCAACCAAGCACCTA  >  NC_002947/866405‑866696

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.