New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	866552 =	40 (0.680)	3 (0.050)	3/244	NT	7.1%	coding (5/474 nt)	PP_0748	hypothetical protein
	?	NC_002947	866595 =	41 (0.740)					coding (48/474 nt)	PP_0748	hypothetical protein

CTTGTGTCGATCGCTATATCTTCGGTTACGGCATGGACTACAAAGGTTACTGGCGCAACGCTAACGGCATCTTCGCCGTAAAGGGGCTGTAACCGTGCGCCAGCCTGCGTTCATCGACCAATCGCTGTTCGCCGGGCTGGCCGAAAAGGCCGCTGCCAACCCGCGCGGGCGGCAGCACCATAACTTTCACGCTATGGAAGAGCCCTGCCACCGCATGGCCGTCGGGCTGCAACCAAGCACCTACATTCCGCCGCATCGCCATTTGAGCGCCGACAAGGCTGAAACCT  >  NC_002947/866454‑866740                                                                                                                                              |                                                                                                                                                  ctTGTGTCGATCGCTATATCTTCGGTTACGGCATGGACTACAAAGGTTACTGGCGCAACGCTAACGGCATCTTCGCCGTAAAGGGGCTGTAACCGTGCGCCAGCCTGCGTTCATCGACCAATCGCTGTTCGCCGGGCTGGCCGAAAAgg                                                                                                                                            <  6:293379/149‑1 (MQ=255)             gCTATATCTTCGGTTACGGCATGGACTACAAAGGTTACTGGCGCAACGCTAACGGCATCTTCGCCGTAAAGGGGCTGTAACCGTGCGCCAGCCTGCGTTCATCGACCAATCGCTGTTCGCCGGGCTGGCCGAAAAGGCCGCTGCCAAc                                                                                                                                 <  7:350120/148‑1 (MQ=255)                              ggCATGGACTACAAAGGTTACTGGCGCAACGCTAACGGCATCTTCGCCGTAAAGGGGCTGTAACCGTGCGCCAGCCTGCGTTCATCGACCAATCGCTGTTCGCCGGGCTGGCCGAAAAGGCCGCTGCCAACCCGCGCGGGCGGCAGCAc                                                                                                               <  7:263516/149‑1 (MQ=255)                              ggCATGGACTACAAAGGTTACTGGCGCAACGCTAACGGCATCTTCGCCGTAAAGGGGCTGTAACCGTGCGCCAGCCTGCGTGCATCGACCAATCGCTGTTCGCCGGGCTGGCCGAAAAGGCCGCTGCCAACCCGCGCGGGCGGCAGCAc                                                                                                               <  7:258629/149‑1 (MQ=255)                                       tcttccatagcgtgaaagttatggtgctgccgcccgcgcgggttggcagcggccttttcgGCCAGCCTGCGTTCATCGACCAATCGCTGTTCGCCGGGCTGGcc                                                                                                                                                   <  6:154601‑M1/44‑1 (MQ=255)                                       tcttccatagcgtgaaagttatggtgctgccgcccgcgcgggttggcagcggccttttcgGCCAGCCTGCGTTCATCGACCAATCGCTGTTCGCCGGGCTGGcc                                                                                                                                                   >  5:154601‑M1/61‑104 (MQ=255)                                       tACAAAGGTTACTGGCGCAACGCTAACGGCATCTTCGCCGTAAAGGGGCTGTAACCGTGCGCCAGCCTGCGTTCATCGACCAATCGCTGTTCGCCGGGCTGGCCGAAAAGGCCGCTGCCAACCCGCGCGGGCGGCAGCACCATAACttt                                                                                                      >  5:171867/1‑149 (MQ=255)                                         cAAAGGTTACTGGCGCAACGCTAACGGCATCTTCGCCGTAAAGGGGCTGTAACCGTGCGCCAGCCTGCGTTCATCGACCAATCGCTGTTCGCCGGGCTGGCCGAAAAGGCCGCTGCCAACCCGCGCGGGCGGCAGCACCATAACTTTCa                                                                                                    >  1:178049/1‑149 (MQ=255)                                          aaaGGTTACTGGCGCAACGCTAACGGCATCTTCGCCGTAAAGGGGCTGTAACCGTGCGCCAGCCTGCGTTCATCGACCAATCGCTGTTCGCCGGGCTGGCCGAAAAGGCCGCTGCCAACCCGCGCGGGCGGCAGCACCATAACTTTCAc                                                                                                   <  2:100111/149‑1 (MQ=255)                                                 aCTGGCGCAACGCTAACGGCATCTTCGCCGTAAAGGGGCTGTAACCGTGCGCCAGCCTGCGTTCATCGACCAATCGCTGTTCGCCGGGCTGGCCGAAAAGGCCGCTGCCAACCCGCGCGGGCGGCAGCACCATAACTTTCACGCTATg                                                                                             >  2:207886/1‑148 (MQ=255)                                                  gtgaaagttatggtgctgccgcccgcgcgggttggcagcggccttttcgGCCAGCCTGCGTTCATCGACCAATCGCTGTTCGCCGGGCTGGCCGAAAAGGCCg                                                                                                                                         >  7:333069‑M1/50‑103 (MQ=255)                                                          aCGCTAACGGCATCTTCGCCGTAAAGGGGCTGTAACCGTGCGCCAGCCTGCGTTCATCGACCAATCGCTGTTCGCCGGGCTGGCCGAAAAGGCCGCTGCCAACCCGCGCGGGCGGCAGCACCATAACATTCACGCTATGGAAGAGCCCt                                                                                   >  6:242852/1‑149 (MQ=255)                                                            gCTAACGGCATCTTCGCCGTAAAGGGGCTGTAACCGTGCGCCAGCCTGCGTTCATCGACCAATCGCTGTTCGCCGGGCTGGCCGAAAAGGCCGCTGCCAACCCGCGCGGGCGGCAGCACCATAACTTTCACGCTATGGAAGAGCCCTGc                                                                                 <  8:96455/149‑1 (MQ=255)                                                              tAACGGCATCTTCGCCGTAAAGGGGCTGTAACCGTGCGCCAGCCTGCGTTCATCGACCAATCGCTGTTCGCCGGGCTGGCCGAAAAGGCCGCTGCCAACCCGCGCGGGCGGCAGCACCATAACTTTCACGCTATGGAAGAGCCCTGCCa                                                                               >  1:226173/1‑149 (MQ=255)                                                              tAACGGCATCTTCGCCGTAAAGGGGCTGTAACCGTGCGCCAGCCTGCGTTCATCGACCAATCGCTGATCGCCGGGCTCGCCGAAAAGGCCGCTGCCAACCCGCGCGGGCGGCAGCACCATAACTTTCACGCTATGGAAGAGCCCTGCCa                                                                               >  1:118440/1‑149 (MQ=255)                                                                        ttCGCCGTAAAGGGGCTGTAACCGTGCGCCAGCCTGCGTTCATCGACCAATCGCTGTTCGCCGGGCTGGCCGAAAAGGCCGCTGCCAACCCGCGCGGGCGGCAGCACCATAACTTTCACGc                                                                                                 >  4:200557/1‑121 (MQ=255)                                                                        ttCGCCGTAAAGGGGCTGTAACCGTGCGCCAGCCTGCGTTCATCGACCAATCGCTGTTCGCCGGGCTGGCCGAAAAGGCCGCTGCCAACCCGCGCGGGCGGCAGCACCATAACTTTCACGc                                                                                                 <  3:200557/121‑1 (MQ=255)                                                                        ttCGCCGTAAAGGGGCTGTAACCGTGCGCCAGCCTGCGTTCATCGACCAATCGCTGTTCGCCGGGCTGGCCGAAAAGGCCGCTGCCAACCCGCGCGGGCGGCAGCACCATAACTTTCACGCTATGGAAGAGCCCTGCCACCGCATGGcc                                                                     >  1:175732/1‑149 (MQ=255)                                                                          cGCCGTAAAGGGGCTGTAACCGTGCGCCAGCCTGCGTTCATCGACCAATCGCTGTTCGCCGGGCTGGCCGAAAAGGCCGCTGCCAACCCGCGCGGGCGGCAGCACCATAACTTTCACGCTATGGAAGAGCCCTGCCACCGCATgg                                                                       <  1:44620/145‑1 (MQ=255)                                                                          cGCCGTAAAGGGGCTGTAACCGTGCGCCAGCCTGCGTTCATCGACCAATCGCTGTTCGCCGGGCTGGCCGAAAAGGCCGCTGCCAACCCGCGCGGGCGGCAGCACCATAACTTTCACGCTATGGAAGAGCCCTGCCACCGCATGGCCGt                                                                   >  3:93049/1‑149 (MQ=255)                                                                           gCCGTAAAGGGGCTGTAACCGTGCGCCAGCCTGCGTTCATCGACCAATCGCTGTTCGCCGGGCTGGCCGAAAAGGCCGCTGCCAACCCGCGCGGGCGGCAGCACCATAACTTTCACGCTATGGAAGAGCCCTGCAACCGCATGGCCGTc                                                                  >  7:181935/1‑149 (MQ=255)                                                                            ccGTAAAGGGGCTGTAACCGTGCGCCAGCCTGCGTTCATCGACCAATCGCTGTTCGCCGGGCTGGCCGAAAAGGCCGCTGCCAACCCGCGCGGGCGGCAGCACCATAACTTTCACGCTATCGAAGAGCCCTGCCACCGCATGGCCGTCg                                                                 <  1:207886/149‑1 (MQ=255)                                                                            ccGTAAAGGGGCTGTAACCGTGCGCCAGCCAGCGTTCATCGACCAATCGCTGTTCGCCGGGCTGGCCGAAAAGGCCGCTGCCACCCCGCGCGGGCGGCAGCACCATAACTTTCACGCTATGGAAGAGCCCTGCCACCGCATGGCCGTCg                                                                 >  1:28170/1‑149 (MQ=255)                                                                                       cTGTAACCGTGCGCCAGCCTGCGTTCATCGACCAATCGCTGTTCGCCGGGCTGGCCGAAAAGGCCGCTGCCAACCCGCGCGGGCGGCAGCACCATAACTTTCACGCTATGGAAGAGCCCTGCCACCGCATGGCCGTCGGGCTGCAAcc                                                       >  2:104539/1‑148 (MQ=255)                                                                                        tGTAACCGTGCGCCAGCCTGCGTTCATCGACCAATCGCTGTTCGCCGGGCTGGCCGAAAAGGCCGCTGCCAACCCGCGCGGGCGGCAGCACCATAACTTTCACGCTATGGAAGAGCCCTGCCACCGCATGGCCGTCGGGCTGCAAcc                                                       >  3:130391/1‑147 (MQ=255)                                                                                        tGTAACCGTGCGCCAGCCTGCGTTCATCGACCAATCGCTGTTCGCCGGGCTGGCCGAAAAGGCCGCTGCCAACCCGCGCGGGCGGCAGCACCATAACTTTCACGCTATGGAAGAGCCCTGCCACCGCATGGCCGTCGGGCTGCAACCaa                                                     >  4:145916/1‑149 (MQ=255)                                                                                        cggccttttcggccagcccggcgaacagcgattggtcgatgaacgcaggctggcCGAAAAGGCCGCTGCCAACCCGCGCGGGCGGCAGCACCATAACTTTCAc                                                                                                   >  7:333069‑M2/55‑103 (MQ=255)                                                                                          tAACCGTGCGCCAGCCTGCGTTCATCGACCAATCGCTGTTCGCCGGGCTGGCCGAAAAGGCCGCTGCCAACCCGCGCGGGCGGCAGCACCATAACTTTCACGCTATGGAAGAGCCCTGCCACCGCATGGCCGTCGGGCTGCAACCAAg                                                    >  1:261225/1‑148 (MQ=255)                                                                                            aCCGTGCGCCAGCCTGCGTTCATCGACCAATCGCTGTTCGCCGGGCTGGCCGAAAAGGCCGCTGCCAACCCGCGCGGGCGGCAGCACCATAACTTTCACGCTATGGAAGAGCCCTGCCACCGCATGGCCGTCGGGCTGCAACCAAGCAc                                                 >  1:191993/1‑149 (MQ=255)                                                                                              cGTGCGCCAGCCTGCGTTCATCGACCAATCGCTGTTCGCCGGGCTGGCCGAAAAGGCCGCTGCCAACCCGCGCGGGCGGCAGCACCATAACTTTCACGCTATGGAAGAGCCCTGCCACCGCATGGCCGTCGGGCTGCAACCAAGCACCt                                               <  2:261225/149‑1 (MQ=255)                                                                                               gTGCGCCAGCCTGCGTTCATCGACCAATCGCTGTTCGCCGGGCTGGCCGAAAAGGCCGCTGCCAACCCGCGCGGGCGGCAGCACCATAACTTTCACGCTATGGAAGAGCCCTGCCACCGCATGGCCGTCGGGCTGCAACCAAGCACCTa                                              >  1:270874/1‑149 (MQ=255)                                                                                                  ggccagcccggcgaacagcgattggtcgatgaacgcaggctggcCGAAAAGGCCGCTGCCAACCCGCGCGGGCGGCAGCACCATAACTTTCACGCTATGGAaga                                                                                        <  6:154601‑M2/60‑1 (MQ=255)                                                                                                  ggccagcccggcgaacagcgattggtcgatgaacgcaggctggcCGAAAAGGCCGCTGCCAACCCGCGCGGGCGGCAGCACCATAACTTTCACGCTATGGAaga                                                                                        >  5:154601‑M2/45‑104 (MQ=255)                                                                                                    CCAGCCTGCGTTCATCGACCAATCGCTGTTCGCCGGGCTGGCCGAAAAGGCCGCTGCAAACCCGCGAGGGCGGCAGCACCATAACTTTCACGATATGGAAGATCCCTGCCACCGCATGGCCGTAGGGCTGCTAACAAGAACCTACAtt                                          <  2:67339‑M1/148‑1 (MQ=255)                                                                                                          tGCGTTCATCGACCAATCGCTGTTCGCCGGGCTGGCCGAAAAGGCCGCTGCCAACCCGCGCGGGCGGCAGCACCATAACTTTCACGCTATGGAAGAGCCCTGACACCGCATGGCCGTCGGGCTCCAACCAACCACCTACATTccgccg                                    >  2:231897/1‑148 (MQ=255)                                                                                                                 aTCGACCAATCGCTGTTCGCCGGGCTGGCCGAAAAGGCCGCTGCCAACCCGCGCGGGCGGCAGCACCATAACTTTCACGCTATGGAAGAGCCCTGCCACCGCATGGCCGTCGGGCTGCAACCACGCACCTACATTCCGCCGCATCGCCa                            >  2:333349/1‑149 (MQ=255)                                                                                                                 aTCGACCAATCGCTGTTCGCCGGGCTGGCCGAAAAGGCCGCTGCCAACCCGCGCGGGCGGCAGCACCATAACTTTCACGCTATGGAAGAGCCCTGCCACCGCATGGCCGTCGGGCTGCAACCAAGCACCTACATTCCGCCGCATCGCCa                            <  6:171867/149‑1 (MQ=255)                                                                                                                 aTCGACCAATCGCTGTTCGCCGGGCTGGCCGAAAAGGCCGCTGCCAACCCGCGCGGGCGGCAGCACCATAACTTTCACGCTATGGAAGAGCCCTGCCACCGCATGGCCGTCGGGCTGCAACCAAGCACCTACATTCCGCCGCATCGCCa                            >  4:13830/1‑149 (MQ=255)                                                                                                                 aTCGACCAATCGCTGTTCGCCGGGCTGGCCGAAAAGGCCGCTGCCAACCCGCGCGGGCGGCAGCACCATAACTTTCACGCTATGGAAGAGCCCTGCCACCGCATGGCCGTCCGGCTGCAACCAAGCACCTACATTCAGCCGCATCCCCa                            >  7:346581/1‑149 (MQ=255)                                                                                                                  tCGACCAATAGCTGTTCGCCGGGCTGGCCGAAAAGGCCGCTGCCAACCCGCGCGGGCGGCAGCACCATAACTTTCACGCTATGGAAGACCCCTGCCACCGCATGGCCGTCGGGCTGCAACCAAGCACCTACATTCCGCCGCATCGCCAt                           >  7:252078/1‑149 (MQ=255)                                                                                                                    gACCAATCGCTGTTCGCCGGGCTGGCCGAAAAGGCCGCTGCCAACCCGCGCGGGCGGCAGCACCATAACTTTCACGCTATGGAAGAGCCCTGCCACCGCATGGCCGTCGGGCTGCAACCAAGCACCTACATTCCGCCGCATCGCCAtt                          <  8:112577/148‑1 (MQ=255)                                                                                                                     aCCAATCGCTGTTCGCCGGGCTGGCCGAAAAGGCCGCTGCCAACCCGCGCGGGCGGCAGCACCATAACTTTCACGCTATGGAAGAGCCCTGCCACCGCATGGCCGTCGGGCTGCAACCAAGCACCTACATTCCGCCGCATCGCCAttt                         >  1:209491/1‑148 (MQ=255)                                                                                                                     aCCAATCGCTGTTCGCCGGGCTGGCCGAAAAGGCCGCTGCCAACCCGCGCGGGCGGCAGCACCATAACTTTCACGCTATGGAAGAGCCCTGCCACCGCATGGCCGTCGGGCTGCAACCAAGCACCTACATTCCGCCGCATCGCCATTTg                        >  1:13743/1‑149 (MQ=255)                                                                                                                     aCCAATCGCTGATCGCCGGGCTGGCCGAAAAGGCCGCTGCCAACCCGCGCGGGCGGCAGCACCATAACTTTCACGCTATGGAAGAGCCCTGCCACCGCATGGCCGTCGGGCTGCAACCAAGCACCTACATTCCGCCGCATCGCCATTTg                        <  2:118440/149‑1 (MQ=255)                                                                                                                      ccAATCGCTGTTCGCCGGGCTGGCCGAAAAGGCCGCTGCCAACCCGCGCGGGCGGCAGCACCATAACTTTCACGCTATGGAAGAGCCCTGCCACCGCATGGCCGTCGGGCTGCAACCAAGCACCTACATTCCGCCGCATCGCCAttt                         >  7:205373/1‑147 (MQ=255)                                                                                                                      ccAATCGCTGTTCGCCGGGCTGGCCGAAAAGGCCGCTGCCAACCCGCGCGGGCGGCAGCACCATAACTTTCACGCTATGGAAGAGCCCTGCCACCGCATGGCCGTCGGGCTGCAACCAAGCACCTACATTCCGCCGCATCGCCATTTGa                       <  2:178049/149‑1 (MQ=255)                                                                                                                          tCGCTGTTCGCCGGGCTGGCCGAAAAGGCCGCTGCCAACCCGCGCGGGCGGCAGCACCATAACTTTCACGCTATGGAAGAGCCCTGCCACCGCATGGCCGTCGGGCTGCAACCAAGCACCTACATTCCGCCGCATCGCCATTTGAgcgc                   <  4:93049/149‑1 (MQ=255)                                                                                                                                ttCGCCGGGCTGGCCGAAAAGGCCGCTGCCAACCCGCGCGGGCGGCAGCACCATAACTTTCACGCTATGGAAGAGCCCTGCCACCGCATGGCCGTCGGGCTGCAACCAAGCACCTACATTCCGCCGCATCGCCATTTGAGCGCCGACaa             <  2:13743/149‑1 (MQ=255)                                                                                                                                    ccGGGCTGGCCGAAAAGGCCGCTGCCAACCCGCGCGGGCGGCAGCACCATAACTTTCACGCTATGGAAGAGCCCTGCCACCGCATGGCCGTCGGGCTGCAACCAAGCACCTACATTCCGCCGCATCGCCATTTGAGCGCCGACAAGGCt         >  5:364630/1‑149 (MQ=255)                                                                                                                                    ccGGGCTGGCCGAAAAGGCCGCTGCCAACCCGCGCGGGCGGCAGCACCATAACTTTCACGCTATGGAAGAGCCCTGCCACCGCATGGCCGTCGGGCTGCAACCAAGCACCTACATTCCGCCGCATCGCCATTTGAGCGCCGACAAGGCt         <  2:270874/149‑1 (MQ=255)                                                                                                                                    ccGGGCTGGCCGAAAAGGCCGCTGCCAACCCGCGCGGGCGGCAGCACCATAACTTTCACGCTATGGAAGAGCCCTGCCACCGCATGGCCGTCGGGCTGCAACCAAGCACCTACATTCCGCCGCATCGCCATTTGAGCGCCGACAAGGCt         <  1:104539/149‑1 (MQ=255)                                                                                                                                        gctggcCGAAAAGGCCGCTGCCAACCCGCGCGGGCGGCAGCACCATAACTTTCACGCTATGGAAGAGCCCTGCCACCGCATGGCCGTCGGGCTGCAACCAAGCACCTACATTCCGCCGCATCGCCATTTGAGCGCCGACAAGGCTGaaa     <  1:333349‑M2/143‑1 (MQ=255)                                                                                                                                         ctggcAGAAAAGGCCGCTGCCAACCCGCGCGGGCGTCAGCACCATAACTTTCACGCTATTCAAGAGCCCTGCCACCGCATGGCCGTCGGGCTGCAACCAAGCACCTACATTCCGCAGCATCGCCAATTGAGCGCCGACAATGCTGAAAc    <  1:67339‑M2/144‑1 (MQ=255)                                                                                                                                           gtcCGAAAAGGCCGCTGCCAAGCCGCGCGGGCGGCAGCACCATAACTTTCACGCTATGGAAGAGCCCTTCCACCTCATGGCCGTCTGGCTGCAAcc                                                       <  2:28035‑M2/93‑1 (MQ=255)                                                                                                                                           ggCCGAAAAGGCCGCTCCCAACCCGCGCGGGCGGCACCACCATAACTTTCAAGCTATTGAAGACCCCTGCCCCCGCATGGCCGTCGGGCTGCAAcc                                                       >  1:28035/1‑96 (MQ=255)                                                                                                                                            gcCGAAAAGGCCGCTGCCAACCCGCGCGGGCGGCAGCACCATAACTTTCACGCTATGGAAGAGCCCTGCCACCGCATGGCCGTCGGGCTGCAACCAAGCACCTACATTCCGCCGCATCGCCATTTGAGCGCCGACAAGGCTGAAACCt  <  2:209491‑M2/146‑1 (MQ=255)                                                                                                                                            gcCGAAAAGGCCGCTGCCAACCCGCGCGGGCGGCAGCACCATAACTTTCACGCTATGGAAGAGCCCTGCCACCGCATGGCCGTCGGGCTGCAACCAAGCACCTACATTCCGCCGCATCGCCATTTGAGCGCCGACAAGGCTGAAACCt  <  2:191993‑M2/146‑1 (MQ=255)                                                                                                                                              |                                                                                                                                                  CTTGTGTCGATCGCTATATCTTCGGTTACGGCATGGACTACAAAGGTTACTGGCGCAACGCTAACGGCATCTTCGCCGTAAAGGGGCTGTAACCGTGCGCCAGCCTGCGTTCATCGACCAATCGCTGTTCGCCGGGCTGGCCGAAAAGGCCGCTGCCAACCCGCGCGGGCGGCAGCACCATAACTTTCACGCTATGGAAGAGCCCTGCCACCGCATGGCCGTCGGGCTGCAACCAAGCACCTACATTCCGCCGCATCGCCATTTGAGCGCCGACAAGGCTGAAACCT  >  NC_002947/866454‑866740

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.