New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1437733	34 (0.580)	3 (0.050)	3/244	NT	9.2%	coding (300/927 nt)	prpA	4‑hydroxyproline epimerase
	?	NC_002947	= 1437768	27 (0.490)					coding (265/927 nt)	prpA	4‑hydroxyproline epimerase

GGGCACGTCCACCGCAACCTGTTGGCGGTAGCGGTAGGAGGGCACGTTGGCGACGGTGATGGCGCCATCTTCATGCAAGGTGGCGCTGACCTGGCCGACCGGGGTGTCGATCTTGTGCACCCCGGGCGTGATCAGGCCCATGTGCTGTAGCGAGGCGACCAGGCCGATGGTGCCGTGGCCGCACATGTTCAGGTAACCGGCGTTGTTGAAGAAGATCACCCCGCAGGTGGCGTCGGCCGACACTGGCGGGCAGTACAGTGCGCCAACCAGCACATCGTTGCCGCGTGGCTCC  >  NC_002947/1437589‑1437880                                                                                                                                                 |                                                                                                                                                    gggCACGTCCACCGCAACCTGTTGGCGGTAGCGGTAGGAGGGCACGTTGGCGACGGTGATGGCGCCATCTTCATGCAAGGTGGCGCTGACCTGGCCGACCGGGGTGTCGATCTTGTGCACCCCGGGCGTGATCAGGCCCATGTGCTGTa                                                                                                                                                 <  2:267732/149‑1 (MQ=255)     aCGTCCACCGCAACCTGTTGGCGGTAGCGGTAGGAGGGCACGTTGGCGACGGTGATGGCGCCATCTTCATGCAAGGTGGCGCTGACCTGGCCGACCGGGGTGTCGATCTTGTGCACCCCGGGCGTGATCAGGCCCATGTGCTGTAGc                                                                                                                                               >  4:107883/1‑147 (MQ=255)     aCGTCCACCGCAACCTGTTGGCGGTAGCGGTAGGAGGGCACGTTGGCGACGGTGATGGCGCCATCTTCATGCAAGGTGGCGCTGACCTGGCCGACCGGGGTGTCGATCTTGTGCACCCCGGGCGTGATCAGGCCCATGTGCTGTAGCGa                                                                                                                                             <  3:29390/149‑1 (MQ=255)         ccACCGCAACCTGTTGGCGGTAGCGGTAGGAGGGCACGTTGGCGACGGTGATGGCGCCATCTTCATGCAAGGTGGCGCTGACCTGGCCGACCGGGGTGTCGATCTTGTGCACCCCGGGCGTGATCAGGCCCATGTGCTGTAGCGAg                                                                                                                                            <  8:99540/146‑1 (MQ=255)         ccACCGCAACCTGTTGGCGGTAGCGGTAGGAGGGCACGTTGGCGACGGTGATGGCGCCATCTTCATGCAAGGTGGCGCTGACCTGGCCGACCGGGGTGTCGATCTTGTGCACCCCGGGCGTGATCAGGCCCATGTGCTGTAGCGAg                                                                                                                                            >  7:99540/1‑146 (MQ=255)                  ccTGTTGGCGGTAGCGGTAGGAGGGCACGTTGGCGACGGTGATGGCGCCATCTTCATGCAAGGTGGCGCTGACCTGGCCGACCGGGGTGTCGATCTTGTGCACCCCGGGCGTGATCAGGCCCATGTGCTGTAGCGAGGCGACCAGGcc                                                                                                                                 >  6:310577/1‑148 (MQ=255)                          cggtagcggtagGAGGGCACGTTGGCGACGGTGATGGCGCCATCTTCATGCAAGGTGGCGCTGACCTGGCCGACCGGGGTGTCGATCTTGTGCACCCCGGGCGTGATCAGGCCCATGTGCTGTAGCGAGGCGACCAGGCCGATGGTGcc                                                                                                                        <  5:310577/149‑1 (MQ=255)                           ggtagcggtagGAGGGCACGTTGGCGACGGTGATGGCGCCATCTTCATGCAAGGTGGCGCTGACCTGGCCGACCGGGGTGTCGATCTTGTGCACCCCGGGCGTGATCAGGCCCATGTGCTGTAGCGAGGCGACCAGGCCGATGGTGCCg                                                                                                                       >  2:94316/1‑149 (MQ=255)                               gcggtagGAGGGCACGTTGGCGACGGTGATGGCGCCATCTTCATGCAAGGTGGCGCTGACCTGGCCGACCGGGGTGTCGATCTTGTGCACCCCGGGCGTGATCAGGCCCATGTGCTGTAGCGAGGCGACCAGGCCGATGGTGCCGTGGc                                                                                                                   <  8:76723/149‑1 (MQ=255)                                  gTAGGAGGGCACGTTGGCGACGGTGATGGCGCCATCTTCATGCAAGGTGGCGCTGACCTGGCCGACCGGGGTGTCGATCTTGTGCACCCCGGGCGTGATCAGGCCCATGTGCTGTAGCGAGGCGACCAGGCCGATGGTGCCGTGGCCg                                                                                                                 <  5:113901‑M2/148‑2 (MQ=255)                                     ggaggGCACGTTGGCGACGGTGATGGCGCCATCTTCATGCAAGGTGGCGCTGACCTGGCCGACCGGGGTGTCGATCTTGTGCACCCCGGGCGTGATCAGGCCCATGTGCTGTAGCGAGGCGACCAGGCCGATGGTGCCGTGGCCgcaca                                                                                                             <  3:341035‑M2/149‑6 (MQ=255)                                        gggCACGTTGGCGACGGTGATGGCGCCATCTTCATGCAAGGTGGCGCTGACCTGGCCGACCGGGGTGTCGATCTTGTGCACCCCGGGCGTGATCAGGCCCATGTGCTGTAGCGAGGCGCCCAGGCCGATGGTGCCGTGGCCGCACATGt                                                                                                          >  6:216187/1‑149 (MQ=255)                                        gggCACGTTGGCGACGGTGATGGCGCCAGCTTCATGCAAGGTGGCGCTGACCTGGCCGACCGGGGTGTCGATCTTGTGCACCCCGGGCGTGATCAGGCCCATGTGCggccacggcaccatcggcctggtcgcctcgctacagcacatgg                                                                                                          <  6:207669‑M1/149‑44 (MQ=255)                                         ggCACGTTGGCGACGGTGATGGCGCCATCTTCATGCAAGGTGGCGCTGACCTGGCCGACCGGGGTGTCGATCTTGTGCACCCCGGGCGTGATCAGGCCCATGTGCTGTAGCGAGGCGACCAGGCCGATGGTGCCGTGGCCGCACATGtt                                                                                                         <  2:218745/149‑1 (MQ=255)                                            aCGTTGGCGACGGTGATGGCGCCATCTTCATGCAAGGTGGCGCTGACCTGGCCGACCGGGGTGTCGATCTTGTGCACCCCGGGCGTGATCAGGCCCATGTGCTGTAGCGAGGCGACCAGGCCGATGGTGCCGTGGCCGCACATGTTCAg                                                                                                      <  3:107883/149‑1 (MQ=255)                                              gTTGGCGACGGTGATGGCGCCATCTTCATGCAAGGTGGCGCTGACCTGGCCGACCGGGGTGTCGATCTTGTGCACCCCGGGCGTGATCAGGCCCATGTGCTGTAGCGAGGCGACCAGGCCGATGGTGCCGt                                                                                                                      <  3:59665/131‑1 (MQ=255)                                              gTTGGCGACGGTGATGGCGCCATCTTCATGCAAGGTGGCGCTGACCTGGCCGACCGGGGTGTCGATCTTGTGCACCCCGGGCGTGATCAGGCCCATGTGCTGTAGCGAGGCGACCAGGCCGATGGTGCCGt                                                                                                                      >  4:59665/1‑131 (MQ=255)                                               ttGGCGACGGTGATGGCGCCATCTTCATGCAAGGTGGCGCTGACCTGGCCGACCGGGGTGTCGATCTTGTGCACCCCGGGCGTGATCAGGCCCATGTGCTGTAGCGAGGCGACCAGGCCGATGGTGCCGTGGCCGCACATGTTCAGGt                                                                                                    >  8:240467/1‑148 (MQ=255)                                                    gACGGTGATGGCGCCATCTTCATGCAAGGTGGCGCTGACCTGGCCGACCGGGGTGTCGATCTTGTGCACCCCGGGTGTGATCAGGCCCATGTGCTGTAGCGAGGCGACCAGGCCGATGGTGcc                                                                                                                        <  6:286676/123‑1 (MQ=255)                                                    gACGGTGATGGCGCCATCTTCATGCAAGGTGGCGCTGACCTGGCCGACCGGGGTGTCGATCTTGTGCACCCCGGGTGTGATCAGGCCCATGTGCTGTAGCGAGGCGACCAGGCCGATGGTGcc                                                                                                                        >  5:286676/1‑123 (MQ=255)                                                              gcgcCATCTTCATGCAAGGTGGCGCTGACCTGGCCGACCGTGGTGTCGATCTTGTGCACCCCGGGCGTGATCAGGCCCATGTGCTGTAGCGAGGCGACCAGGCCGATGGTGCCGTGGCCGCACATGTTCAGGTAACCGGCGTTGTTga                                                                                     <  8:250050/148‑1 (MQ=255)                                                                   aTCTTCATGCAAGGTGGCGCTGACCTGGCCGACCGGGGTGTCGATCTTGTGCACCCCGGGCGTGATCAGGCCCATGTGCTg                                                                                                                                                   <  8:66502/81‑1 (MQ=255)                                                                   aTCTTCATGCAAGGTGGCGCTGACCTGGCCGACCGGGGTGTCGATCTTGTGCACCCCGGGCGTGATCAGGCCCATGTGCTg                                                                                                                                                   >  7:66502/1‑81 (MQ=255)                                                                      ttCATGCAAGGTGGCGCTGACCTGGCCGACCGGGGTGTCGATCTTGTGCACCCCGGGCGTGATCAGGCCCATGTGCggccacggcaccatcggcctggtcgcctcgctacagcacatgggc                                                                                                        <  4:220271‑M1/121‑46 (MQ=255)                                                                      ttCATGCAAGGTGGCGCTGACCTGGCCGACCGGGGTGTCGATCTTGTGCACCCCGGGCGTGATCAGGCCCATGTGCggccacggcaccatcggcctggtcgcctcgctacagcacatgggc                                                                                                        >  3:220271‑M1/1‑76 (MQ=255)                                                                          tGCAAGGTGGCGCTGACCTGGCCGACCGGGGTGTCGATCTTGTGCACCCCGGGCGTGATCAGGCCCATGTGCTGTAGCGAGGCGACCAGGCCGATGGTGCCGt                                                                                                                      <  6:45044/103‑1 (MQ=255)                                                                          tGCAAGGTGGCGCTGACCTGGCCGACCGGGGTGTCGATCTTGTGCACCCCGGGCGTGATCAGGCCCATGTGCTGTAGCGAGGCGACCAGGCCGATGGTGCCGt                                                                                                                      >  5:45044/1‑103 (MQ=255)                                                                                 tGGCGCTGACCTGGCCGACCGGGGTGTCGATCTTGTGCACCCCGGGCGTGATCAGGCCCATGTGCTGTAGCGAGGCGACCAGGCCGATGGTGCCGTGGCCGCACATGTTCAGGTAACCGGCGTTGTTGAAGAAGATCACCCCGCAGGTg                                                                 <  7:240467/149‑1 (MQ=255)                                                                                 tGGCGCTGACCTGGCCGACCGGGGTGTCGATCTTGTGCACCCCGGGCGTGATCAGGCCCATGTGCTGTAGCGAGGCGACCAGGCCGATGGTGCCGTGGCCGCACATGTTCAGGTAACCGGCGTTGTTGAAGAAGATCACCCCGCAGGTg                                                                 <  3:3391/149‑1 (MQ=255)                                                                                    cgcTGACCTGGCCGACCGGGGTGTCGATCTTGTGCACCCCGGGCGTGATCAGGCCCATGTGCTGTAGCGAGGCGACCAGGCCGATGGTGCCGTGGCCGCACATGTTCAGGTAACCGGCGTTGTTGAAGAAGATCACCCCGCAGGTg                                                                 <  5:312244/146‑1 (MQ=255)                                                                                    cgcTGACCTGGCCGACCGGGGTGTCGATCTTGTGCACCCCGGGCGTGATCAGGCCCATGTGCTGTAGCGAGGCGACCAGGCCGATGGTGCCGTGGCCGCACATGTTCAGGTAACCGGCGTTGTTGAAGAAGATCACCCCGCAGGTg                                                                 >  6:312244/1‑146 (MQ=255)                                                                                         aCCTGGCCGACCGGGGTGTCGATCTTGTGCACCCCGGGCGTGATCAGGCCCATGTGCTGTAGCGAGGCGACCAGGCCGATGGTGCCGTGGCCGCACATGTTCAGGTAACCGGCGTTGTTGAAGAAGATCACCCCGCAGGTGGCGTCGGc                                                         <  1:94316/149‑1 (MQ=255)                                                                                           cttggcGACCGGGTTGTCGATCTTGTGAACCCCTGGCGTGATCAGGCCCATGTTCTGTAGCGAGGCGACCAGGCCGATGGTGCCGTGGCCGCACATGTTCAGGTAACCGGCGTTGTTGAAGAAGATCACCCCGCAGGTg                                                                 <  8:40818/134‑1 (MQ=255)                                                                                           cTGGCCGACCGGGGTGTCGATCTTGTGCACCCCGGGAGTGATCAGGCCCATGTGATGTAGCGAGGCGACCAGGCCGATGGTGCCGTGGCCGCACATGTTCAGGTAAACGGCGTTGTTGAAGAAGATCACCCCGCAGGTg                                                                 >  7:40818/1‑139 (MQ=255)                                                                                              gCCGACCGGGGTGTCGATCTTGTGCACCCCGGGCGTGATCAGGCCCATGTGCTGTAGCGAGGCGACCAGGCCGATGGTGCCGTGGCCGCACATGTTCAGGTAACCGGCGTTGTTGAAGAAGATCACCCCGCAGGTGGCGTCGGCCGaca                                                    <  3:177835/149‑1 (MQ=255)                                                                                               ccGACCGGGGTGTCGATCTTGTGCACCCCGGGCGTGATCAGGCCCATGTGCTGTAGCGAGGCGACCAGGCCGATGGTGCCGTGGCCGCACATGTTCAGGTAACCGGCGTTGTTGAAGAAGATCACCCCGCAGGTGGCGTCGGCCGacac                                                   <  4:341035/149‑1 (MQ=255)                                                                                                   ccGGGGTGTCGATCTTGTGCACCCCGGGCGTGATCAGGCCCATGTGCTGTAGCGAGGCGACCAGGCCGATGGTGCCGTGGCCGCACATGTTCAGGTAACCGGCGTTGTTGAAGAAGATCACCCCGCAGGTGGCGTCGGCCGACACTGGc                                               <  6:113901/149‑1 (MQ=255)                                                                                                    cGGGGTGTCGATCTTGTGCACCCCGGGCGTGATCAGGCCCATGTGCTGTAGCGAGGCGACCAGGCCGATGGTGCCGTGGCCGCACATGTTCAGGTAACCGGCGTTGTTGAAGAAGATCACCCCGCAGGTGGCGTCGGCCGACACTGGCg                                              >  2:57504/1‑149 (MQ=255)                                                                                                         tgtCGATCTTGTGCACCCCGGGCGTGATCAGGCCCATGTGCTGTAGCGAGGCGACCAGGCCGATGGTGCCGTGGCCGCACATGTTCAGGTAACCGGCGTTGTTGAAGAAGATCACCCCGCAGGTGGCGTCGGCCGCCACTGGCGGGCAg                                         >  5:124877/1‑149 (MQ=255)                                                                                                                     gCACCCCGGGCGTGATCAGGCCCATGTGCTGTAGCGAGGCGACCAGGCCGATGGTGCCGTGGCCGCACATGTTCAGGTAACCGGCGTTGTTGAAGAAGATCACCCCGCAGGTGGCGTCGGCCGACACTGGCGGGCAGTACAGTGCGcc                              >  3:249186/1‑148 (MQ=255)                                                                                                                       aCCCCGGGCGTGATCAGGCCCATGTGCTGTAGCGAGGCGACCAGGCCGATGGTGCCGTGGCCGCACATGTTCAGGTAACCGGCGTTGTTGAAGAAGATCACCCCGCAGGTGGCGTCGGCCGACACTGGCGGGCAGTACAGTGCGCCAAc                           >  7:212089/1‑149 (MQ=255)                                                                                                                                    tCAGGCCCATGTGCTGTAGCGAGGCGCCCAGGCCGATGGTGCCGTGGCCGCACAAGTTCAGGTAACCGGCGTTGTTGAAGAAGATCACCCCGCAGGTGGCGTCGGCCGACACTGGCGGGCAGTACAGTGCGCCACCCAGCACATCGTTg              >  2:362226/1‑149 (MQ=255)                                                                                                                                        gCCCATGTGCTGTAGCGAGGCGACCAGGCCGATGGTGCCGTGGCCgcacatgggcctgatcacgcccggggtgcacaagatcgacaccccggtcggccaggtcagcgccaccttgcatgaa                                      >  3:220271‑M2/1‑45 (MQ=255)                                                                                                                                        gCCCATGTGCTGTAGCGAGGCGACCAGGCCGATGGTGCCGTGGCCgcacatgggcctgatcacgcccggggtgcacaagatcgacaccccggtcggccaggtcagcgccaccttgcatgaa                                      <  4:220271‑M2/121‑77 (MQ=255)                                                                                                                                          ccATGTGCTGTAGCGAGGCGACCAGGCCGATGGTGCCGTGGCCgcacatgggcctgatcacgcccggggtgcacaagatcgacaccccggtcggccaggtcagcgccaccttgcatgaagctggcgccatcaccgtcgccaacgtgccc        <  6:207669‑M2/149‑107 (MQ=255)                                                                                                                                             tgtgCggccacggcaccatcggcctggtcgcctcgctacagcacatgggcctgatcacgcccggggtgcacaagatcgacaccccggtcggccaggtcagcgccaccttgcatgaagatggcgccatcaccgtcgccaacgtgccctcc     <  3:341035‑M1/149‑145 (MQ=255)                                                                                                                                              gtgCTGTAGCGAGGCGACCAGGCCGATGGTGCCGTGGCCGCACATGTTCAGGTAACCGGCGTTGTTGAAGAAGATCACCCCGCAGGTGGCGTCGGCCGACACTGGCGGGCAGTACAGTGCGCCAACCAGCACATCGTTGCCGCGTGGCt    >  2:62221/1‑149 (MQ=255)                                                                                                                                                 cggccacggcaccatcggcctggtcgcctcgctacagcacatgggcctgatcacgcccggggtgcacaagatcgacaccccggtcggccaggtcagcgccaccttgcatgaagatggcgccatcaccgtcgccaacgtgccctcctac  <  5:113901‑M1/148‑148 (MQ=255)                                                                                                                                                 |                                                                                                                                                    GGGCACGTCCACCGCAACCTGTTGGCGGTAGCGGTAGGAGGGCACGTTGGCGACGGTGATGGCGCCATCTTCATGCAAGGTGGCGCTGACCTGGCCGACCGGGGTGTCGATCTTGTGCACCCCGGGCGTGATCAGGCCCATGTGCTGTAGCGAGGCGACCAGGCCGATGGTGCCGTGGCCGCACATGTTCAGGTAACCGGCGTTGTTGAAGAAGATCACCCCGCAGGTGGCGTCGGCCGACACTGGCGGGCAGTACAGTGCGCCAACCAGCACATCGTTGCCGCGTGGCTCC  >  NC_002947/1437589‑1437880

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.