New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1437733	34 (0.580)	3 (0.050)	3/244	NT	9.2%	coding (300/927 nt)	prpA	4‑hydroxyproline epimerase
	?	NC_002947	= 1437768	27 (0.490)					coding (265/927 nt)	prpA	4‑hydroxyproline epimerase

GTAGGAGGGCACGTTGGCGACGGTGATGGCGCCATCTTCATGCAAGGTGGCGCTGACCTGGCCGACCGGGGTGTCGATCTTGTGCACCCCGGGCGTGATCAGGCCCATGTGCTGTAGCGAGGCGACCAGGCCGATGGTGCCGTGGCCGCACATGTTCAGGTAACCGGCGTTGTTGAAGAAGATCACCCCGCAGGTGGCGTCGGCCGACACTGGCGGGCAGTACAGTGCGCCAACCAGCACATCGTTGCCGCGTGGCTCCAGCAGGCAGGCGCGGCGCCACCGGTCGT  >  NC_002947/1437622‑1437908                                                                                                                                                   |                                                                                                                                             gTAGGAGGGCACGTTGGCGACGGTGATGGCGCCATCTTCATGCAAGGTGGCGCTGACCTGGCCGACCGGGGTGTCGATCTTGTGCACCCCGGGCGTGATCAGGCCCATGTGCTGTAGCGAGGCGACCAGGCCGATGGTGCCGTGGCCg                                                                                                                                             <  5:113901‑M2/148‑2 (MQ=255)    ggaggGCACGTTGGCGACGGTGATGGCGCCATCTTCATGCAAGGTGGCGCTGACCTGGCCGACCGGGGTGTCGATCTTGTGCACCCCGGGCGTGATCAGGCCCATGTGCTGTAGCGAGGCGACCAGGCCGATGGTGCCGTGGCCgcaca                                                                                                                                         <  3:341035‑M2/149‑6 (MQ=255)       gggCACGTTGGCGACGGTGATGGCGCCATCTTCATGCAAGGTGGCGCTGACCTGGCCGACCGGGGTGTCGATCTTGTGCACCCCGGGCGTGATCAGGCCCATGTGCTGTAGCGAGGCGCCCAGGCCGATGGTGCCGTGGCCGCACATGt                                                                                                                                      >  6:216187/1‑149 (MQ=255)        ggCACGTTGGCGACGGTGATGGCGCCATCTTCATGCAAGGTGGCGCTGACCTGGCCGACCGGGGTGTCGATCTTGTGCACCCCGGGCGTGATCAGGCCCATGTGCTGTAGCGAGGCGACCAGGCCGATGGTGCCGTGGCCGCACATGtt                                                                                                                                     <  2:218745/149‑1 (MQ=255)           aCGTTGGCGACGGTGATGGCGCCATCTTCATGCAAGGTGGCGCTGACCTGGCCGACCGGGGTGTCGATCTTGTGCACCCCGGGCGTGATCAGGCCCATGTGCTGTAGCGAGGCGACCAGGCCGATGGTGCCGTGGCCGCACATGTTCAg                                                                                                                                  <  3:107883/149‑1 (MQ=255)              ttGGCGACGGTGATGGCGCCATCTTCATGCAAGGTGGCGCTGACCTGGCCGACCGGGGTGTCGATCTTGTGCACCCCGGGCGTGATCAGGCCCATGTGCTGTAGCGAGGCGACCAGGCCGATGGTGCCGTGGCCGCACATGTTCAGGt                                                                                                                                >  8:240467/1‑148 (MQ=255)                             gcgcCATCTTCATGCAAGGTGGCGCTGACCTGGCCGACCGTGGTGTCGATCTTGTGCACCCCGGGCGTGATCAGGCCCATGTGCTGTAGCGAGGCGACCAGGCCGATGGTGCCGTGGCCGCACATGTTCAGGTAACCGGCGTTGTTga                                                                                                                 <  8:250050/148‑1 (MQ=255)                                                tGGCGCTGACCTGGCCGACCGGGGTGTCGATCTTGTGCACCCCGGGCGTGATCAGGCCCATGTGCTGTAGCGAGGCGACCAGGCCGATGGTGCCGTGGCCGCACATGTTCAGGTAACCGGCGTTGTTGAAGAAGATCACCCCGCAGGTg                                                                                             <  7:240467/149‑1 (MQ=255)                                                tGGCGCTGACCTGGCCGACCGGGGTGTCGATCTTGTGCACCCCGGGCGTGATCAGGCCCATGTGCTGTAGCGAGGCGACCAGGCCGATGGTGCCGTGGCCGCACATGTTCAGGTAACCGGCGTTGTTGAAGAAGATCACCCCGCAGGTg                                                                                             <  3:3391/149‑1 (MQ=255)                                                   cgcTGACCTGGCCGACCGGGGTGTCGATCTTGTGCACCCCGGGCGTGATCAGGCCCATGTGCTGTAGCGAGGCGACCAGGCCGATGGTGCCGTGGCCGCACATGTTCAGGTAACCGGCGTTGTTGAAGAAGATCACCCCGCAGGTg                                                                                             >  6:312244/1‑146 (MQ=255)                                                   cgcTGACCTGGCCGACCGGGGTGTCGATCTTGTGCACCCCGGGCGTGATCAGGCCCATGTGCTGTAGCGAGGCGACCAGGCCGATGGTGCCGTGGCCGCACATGTTCAGGTAACCGGCGTTGTTGAAGAAGATCACCCCGCAGGTg                                                                                             <  5:312244/146‑1 (MQ=255)                                                        aCCTGGCCGACCGGGGTGTCGATCTTGTGCACCCCGGGCGTGATCAGGCCCATGTGCTGTAGCGAGGCGACCAGGCCGATGGTGCCGTGGCCGCACATGTTCAGGTAACCGGCGTTGTTGAAGAAGATCACCCCGCAGGTGGCGTCGGc                                                                                     <  1:94316/149‑1 (MQ=255)                                                          cttggcGACCGGGTTGTCGATCTTGTGAACCCCTGGCGTGATCAGGCCCATGTTCTGTAGCGAGGCGACCAGGCCGATGGTGCCGTGGCCGCACATGTTCAGGTAACCGGCGTTGTTGAAGAAGATCACCCCGCAGGTg                                                                                             <  8:40818/134‑1 (MQ=255)                                                          cTGGCCGACCGGGGTGTCGATCTTGTGCACCCCGGGAGTGATCAGGCCCATGTGATGTAGCGAGGCGACCAGGCCGATGGTGCCGTGGCCGCACATGTTCAGGTAAACGGCGTTGTTGAAGAAGATCACCCCGCAGGTg                                                                                             >  7:40818/1‑139 (MQ=255)                                                             gCCGACCGGGGTGTCGATCTTGTGCACCCCGGGCGTGATCAGGCCCATGTGCTGTAGCGAGGCGACCAGGCCGATGGTGCCGTGGCCGCACATGTTCAGGTAACCGGCGTTGTTGAAGAAGATCACCCCGCAGGTGGCGTCGGCCGaca                                                                                <  3:177835/149‑1 (MQ=255)                                                              ccGACCGGGGTGTCGATCTTGTGCACCCCGGGCGTGATCAGGCCCATGTGCTGTAGCGAGGCGACCAGGCCGATGGTGCCGTGGCCGCACATGTTCAGGTAACCGGCGTTGTTGAAGAAGATCACCCCGCAGGTGGCGTCGGCCGacac                                                                               <  4:341035/149‑1 (MQ=255)                                                                  ccGGGGTGTCGATCTTGTGCACCCCGGGCGTGATCAGGCCCATGTGCTGTAGCGAGGCGACCAGGCCGATGGTGCCGTGGCCGCACATGTTCAGGTAACCGGCGTTGTTGAAGAAGATCACCCCGCAGGTGGCGTCGGCCGACACTGGc                                                                           <  6:113901/149‑1 (MQ=255)                                                                   cGGGGTGTCGATCTTGTGCACCCCGGGCGTGATCAGGCCCATGTGCTGTAGCGAGGCGACCAGGCCGATGGTGCCGTGGCCGCACATGTTCAGGTAACCGGCGTTGTTGAAGAAGATCACCCCGCAGGTGGCGTCGGCCGACACTGGCg                                                                          >  2:57504/1‑149 (MQ=255)                                                                        tgtCGATCTTGTGCACCCCGGGCGTGATCAGGCCCATGTGCTGTAGCGAGGCGACCAGGCCGATGGTGCCGTGGCCGCACATGTTCAGGTAACCGGCGTTGTTGAAGAAGATCACCCCGCAGGTGGCGTCGGCCGCCACTGGCGGGCAg                                                                     >  5:124877/1‑149 (MQ=255)                                                                                    gCACCCCGGGCGTGATCAGGCCCATGTGCTGTAGCGAGGCGACCAGGCCGATGGTGCCGTGGCCGCACATGTTCAGGTAACCGGCGTTGTTGAAGAAGATCACCCCGCAGGTGGCGTCGGCCGACACTGGCGGGCAGTACAGTGCGcc                                                          >  3:249186/1‑148 (MQ=255)                                                                                      aCCCCGGGCGTGATCAGGCCCATGTGCTGTAGCGAGGCGACCAGGCCGATGGTGCCGTGGCCGCACATGTTCAGGTAACCGGCGTTGTTGAAGAAGATCACCCCGCAGGTGGCGTCGGCCGACACTGGCGGGCAGTACAGTGCGCCAAc                                                       >  7:212089/1‑149 (MQ=255)                                                                                                   tCAGGCCCATGTGCTGTAGCGAGGCGCCCAGGCCGATGGTGCCGTGGCCGCACAAGTTCAGGTAACCGGCGTTGTTGAAGAAGATCACCCCGCAGGTGGCGTCGGCCGACACTGGCGGGCAGTACAGTGCGCCACCCAGCACATCGTTg                                          >  2:362226/1‑149 (MQ=255)                                                                                                       gCCCATGTGCTGTAGCGAGGCGACCAGGCCGATGGTGCCGTGGCCgcacatgggcctgatcacgcccggggtgcacaagatcgacaccccggtcggccaggtcagcgccaccttgcatgaa                                                                  <  4:220271‑M2/121‑77 (MQ=255)                                                                                                       gCCCATGTGCTGTAGCGAGGCGACCAGGCCGATGGTGCCGTGGCCgcacatgggcctgatcacgcccggggtgcacaagatcgacaccccggtcggccaggtcagcgccaccttgcatgaa                                                                  >  3:220271‑M2/1‑45 (MQ=255)                                                                                                         ccATGTGCTGTAGCGAGGCGACCAGGCCGATGGTGCCGTGGCCgcacatgggcctgatcacgcccggggtgcacaagatcgacaccccggtcggccaggtcagcgccaccttgcatgaagctggcgccatcaccgtcgccaacgtgccc                                    <  6:207669‑M2/149‑107 (MQ=255)                                                                                                             gtgCTGTAGCGAGGCGACCAGGCCGATGGTGCCGTGGCCGCACATGTTCAGGTAACCGGCGTTGTTGAAGAAGATCACCCCGCAGGTGGCGTCGGCCGACACTGGCGGGCAGTACAGTGCGCCAACCAGCACATCGTTGCCGCGTGGCt                                >  2:62221/1‑149 (MQ=255)                                                                                                                     gCGAGGCGACCAGGCCGATGGTGCCGTGGCCGCACATGTTCAGGTAACCGGCGTTGTTGaagaag                                                                                                            >  3:128791/1‑65 (MQ=255)                                                                                                                     gCGAGGCGACCAGGCCGATGGTGCCGTGGCCGCACATGTTCAGGTAACCGGCGTTGTTGaagaag                                                                                                            <  4:128791/65‑1 (MQ=255)                                                                                                                       gAGGCGACCAGGCCGATGGTGCCGTGGCCGCACATGTTCAGGTAACCGGCGTTGTTGAAGAAGATCACCCCGCAGGTGGCGTCGGCCGACACTGGCGGGCAGTACAGTGCGCCAACCAGCACATCGTTGCCGCGTGGCTCCAgcagg                        >  5:187995/1‑147 (MQ=255)                                                                                                                          gCGACCAGGCCGATGGTGCCGTGGCCGCACATGTTCAGGTAACCGGCGTTGTTGAAGAAGATCACCCCGCAGGTGGCGTCGGCCGACACTGGCGGGCAGTACAGTGCGCCAACCAGCACATCGTTGCCGCGTGGCTCCAGCaggcaggc                   >  1:310213/1‑149 (MQ=255)                                                                                                                            gACCAGGCCGATGGTGCCGTGGCCGCACATGTTCAGGTAACCGGCGTTGTTGAAGAAGATCACCCCGCAGGTGGCGTCGGCCGACACTGGCGGGCAGTACAGTGCGCCAACCAGCACATCGTTGCCGCGTGGCTCCAGCAGGCAggcgc                 >  7:321218/1‑149 (MQ=255)                                                                                                                              ccAGGCCGATGGTGCCGTGGCCGCACATGTTCAGGTAACCGGCGTTGTTGAAGAAGATCACCCCGCAGGTGGCGTCGGCCGACACTGGCGGGCAGTACAGTGCGCCAACCAGCACATCGTTGCCGCGTGGCTCCAGCAGGCAggcgcgg               <  5:216187/149‑1 (MQ=255)                                                                                                                                  gCCGATGGTGCCGTGGCCGCACATGTTCAGGTAACCGGCGTTGTTGAAGAAGATCACCCCGCAGGTGGCGTCGGCCGACACTGGCGGGCAGTACAGTGCGCCAACCAGCACATCGTTGCCGCGTGGCTCCAGCAGGCAggcgcgaactg           >  6:17864/1‑144 (MQ=255)                                                                                                                                       tGGTACCTTGGCCGCACATGTTCAGGTAACCCGCGTAGTTGAAGAAGATCACCCCTCACGTGGCGTCGGCCGACACTGGCGGGCAGTACAGTGCGCCAACCAGCACATCGTTGCCTCGTGGCTCCACCAGGCAGGCGCGGCGCCAccc       >  2:83119/1‑147 (MQ=255)                                                                                                                                            ccGTGGCCGCACATGTTCAGGTAACCGGCGTTGTTGAAGAAGATCACCCCGCAGGTGGCGTCGGCCGACACTGGCGGGCAGTACAGTGCGCCAACCAGCACATCGTTGCCGCGTGGCTCCAGCAGGCAGGCGCGGCGCCACCGGTCGt  <  2:310213/148‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                             GTAGGAGGGCACGTTGGCGACGGTGATGGCGCCATCTTCATGCAAGGTGGCGCTGACCTGGCCGACCGGGGTGTCGATCTTGTGCACCCCGGGCGTGATCAGGCCCATGTGCTGTAGCGAGGCGACCAGGCCGATGGTGCCGTGGCCGCACATGTTCAGGTAACCGGCGTTGTTGAAGAAGATCACCCCGCAGGTGGCGTCGGCCGACACTGGCGGGCAGTACAGTGCGCCAACCAGCACATCGTTGCCGCGTGGCTCCAGCAGGCAGGCGCGGCGCCACCGGTCGT  >  NC_002947/1437622‑1437908

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.