New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2899473	46 (0.780)	3 (0.050)	3/248	NT	7.0%	coding (1157/1374 nt)	PP_2553	MFS transporter
	?	NC_002947	= 2899506	36 (0.640)					coding (1124/1374 nt)	PP_2553	MFS transporter

GTCCGGGTTGCCCAGGTCTTCCATCGCCAGGCGGTGGGTTTCCGGGGCAATGTAGGCTGCCAGGGCACACACGCCGGTGATGAAGAAGGCCAGCCCACCGACTACCAGCGGAATGTTGTCCGAGCCGGGTGGGGCAACCATTGCGAACAGCGCGGGCAGCATGGCGGTCAGCATGGTGCCGATGTTCTGCGCGATGGCCATGGCGGTAACGCGGTAGCGGGTGTGGAACAGCTCTGGGTAGAAGCTTGGGAACACCGCGTTGTAACCCTGGTAGACCATGCCCCACATGACGA  >  NC_002947/2899325‑2899617                                                                                                                                                     |                                                                                                                                                 gTCCGGGTTGCCCAGCTCTTCCATCGCCAGGCGGTGGGTTTCCGGGGCAATGTAGGCTGCCAGGGCACACACGCCGGTGATGAAGAAGGCCAGCCCACCGACTACCAGCGGAATGTTGTCCGAGCCGGGTGGGGCAACCATTGCGAACA                                                                                                                                                  <  3:275393‑M1/149‑1 (MQ=255)   ccGGGTTGCCCAGGTCTTCCATCGCCAGGCGGTGGGTTTCCGGGGCAATGTAGGCTGCCAGGGCACACACGCCGGTGATGAAGAAGGCCAGCCCACCGACTACCAGCGGAATGTTGTCCGAGCCGGGTGGGGCAACCATTGCGAACAgc                                                                                                                                                >  8:161185/1‑149 (MQ=255)     gggTTGCCCAGGTCTTCCATCGCCAGGCGGTGGGTTTCCGGGGCAATGTAGGCTGCCAGGGCACACACGCCGGTGATGAAGAAGGCCAGCCCACCGACTACCAGCGGAATGTTGTCCGAGCCGGGTGGGGCAACCATTGCGAACAgcgc                                                                                                                                              >  7:169422/1‑149 (MQ=255)     gggTTGCCCAGGTCTTCCATCGCCAGGCGGTGGGTTTCCGGGGCAATGTAGGCTGCCAGGGCACACACGCCGGTGATGAAGAAGGCCAGCCCACCGACTACCAGCGGAATGTTGTCCGAGCCGAGTGGGGCAACCATTGCGAACAgcgc                                                                                                                                              >  8:303683/1‑149 (MQ=255)       gTTTCCCAGGTCTTCCATCGCCATGCGGTGGGTTTCCGGGGCAATGTAGGCTGCCAGGGCACACACGCCGGTGATGAAGAAGGCCAGCCCACCGACTACCAGCGGAATGTTGTCCGAGCCGGGTGGGGCAACCATTGCGAACAGCGCgg                                                                                                                                            <  7:77635/149‑1 (MQ=255)        ttGCCCAGGTCTTCCATCGCCAGGCGGTGGGTTTCCGGGGCAATGTAGGCTGCCAGGGCACACACGCCGGTGATGAAGAAGGCCAGCCCACCGACTACCAGCGGAATGTTGTCCGAGCCGGGTGGGGCAACCATTGCGAACAGCGCggg                                                                                                                                           <  7:108958/149‑1 (MQ=255)           cccAGGTCTTCCATCGCCAGGCGGTGGGTTTCCGGGGCAATGTAGGCTGCCAGGGCACACACGCCGGTGATGAAGAAGGCCAGCCCACCGACTACCAGCGGAATGTTGTCCGAGCCGGGTGGGGCAACCATTGCGAACAGCGCGGgcag                                                                                                                                        >  7:17428/1‑149 (MQ=255)             cAGGTCTTCCATCGCCAGGCGGTGGGTTTCCGGGGCAATGTAGGCTGCCAGGGCACACACGCCGGTGATGAAGAAGGCCAGCCCACCGACTACCAGCGGAATGTTGTCCGAGCCGGGTGGGGCAACCATTGCGAACAGCGCGGgcagca                                                                                                                                      >  1:113715/1‑149 (MQ=255)                 tCTTCCATCGCCAGGCGGTGGGTTTCCGGGGCAATGTAGGCTGCCAGGGCACACACGCCGGTGATGAAGAAGGCCAGCCCACCGACTACCAGCGGAATGTTGTCCGAGCCGGGTGGGGCAACCATTGCGAACAGCGCGGGCAGCATGGc                                                                                                                                  <  7:161185/149‑1 (MQ=255)                     ccATCGCCAGGCGGTTGGTTTCCGTGGCAATGTAGGCTGCCAGGGCACACACGCCGGTGATGAAGAAGGCCAGCCCACCGACTACCAGCGGAATGTTGTCCGAGCCGGGTGTGGCAACCATTGCGAACAGCGCGGGCAGCATGGCg                                                                                                                                 <  8:17428/146‑1 (MQ=255)                     ccATCGCCAGGCGGTGGGTTTCCGGGGCAATGTAGGCTGCCAGGGCACACACGCCGGTGATGAAGAAGGCCAGCCCACCGACTACCAGCGGAATGTTGTCCGAGCCGGGTGGGGCAACCATTGCGAACAGCGCGGGCAGCATGGCGGt                                                                                                                               >  2:142639/1‑148 (MQ=255)                      cATCGCCAGGCGGTGGGTTTCCGGGGCAATGTAGGCTGCCAGGGCACACACGCCGGTGATGAAGAAGGCCAGCCCACCGACTACCAGCGGAATGTTGTCCGAGCCGGGTGGGGCAACCATTGCGAACAGCGCGGGCAGCATGGCGGTc                                                                                                                              <  2:257728/148‑1 (MQ=255)                      cATCGCCAGGCGGTGGGTTTCCGGGGCAATGTAGGCTGCCAGGGCACACACGCCGGTGATGAAGAAGGCCAGCCCACCGACTACCAGCGGAATGTTGTCCGAGCCGGGTGGGGCAACCATTGCGAACAGCGCGGGCAGCATGGCGGTCa                                                                                                                             <  1:142639/149‑1 (MQ=255)                               gCGGTGGGTTTCCGGGGCAATGTAGGCTGCCAGGGCACACACGCCGGTGATGAAGAAGGCCAGCCCACCGACTACCAGCGGAATGTTGTCCGAGCCGGGTGGGGCAACCATTGCGAACAGCGCGGGCAGCATGGCGGTCAGCATGGTGc                                                                                                                    >  8:197350/1‑149 (MQ=255)                                  gTGGGTTTCCGGGGCAATGTAGACTGCCAGGGCACACACGCCGGTGATGAAGAAGGCCAGCCCACCGACTACCAGCGGAATGTTGTCCGAGCCGGGTGGGGCAACCATTGCGAACAtcggcaccatgctgaccgccatgctgcccgcgc                                                                                                                 >  4:104214‑M1/1‑116 (MQ=255)                                       tttCCGGGGCAATGTAGGCTGCCAGGGCACACACGCCGGTGATGAAGAAGGCCAGCCCACCGACTACCAGCGGAATGTTGTCCGAGCCGGGTGGGGCAACCATTGCGAACAGCGCGGGCAGCATGGCGGTCAGCATGGTGCCGAtgttc                                                                                                            <  3:162472‑M2/149‑6 (MQ=255)                                           cGGGGCAATGTAGACTGCCAGGGCACACACGCCGGTGATGAAGAAGGCCAGCCCACCGACTACCAGCGGAATGTTGTCCGAGCCGGGTGGGGCAACCATTGCGAACAtcggcaccatgctgaccgccatgctgcccgcgctgttcgcaa                                                                                                        <  3:104214‑M1/149‑43 (MQ=255)                                            ggggCAATGTAGGCTGCCAGGGCACACACGCCGGTGATGAAGAAGGCCAGCCCACCGACTACCAGCGGAATGTTGTCCGAGCCGGGTGGGGCAACCATTGCGAACAtcggcacgatgctgaccgccatgctgcccgcgctgttcgcaat                                                                                                       <  1:55864‑M1/149‑44 (MQ=255)                                                cAATGTAGGCTGCCAGGGCACACACGCCGGTGATGAAGAAGGCCAGCCCACCGACTACCAGCGGAATGTTGTCCGAGCCGGGTGGGGCAACCATTGCGAACAGCGCGGGCAGCATGGCGGTCAGCATGGTGCCGATGTTCTGCGCGATg                                                                                                   >  8:62932/1‑149 (MQ=255)                                                cAATGTAGGCTGCCAGGGCACACACGCCGGTGATGAAGAAGGCCAGCCCACCGACTACCAGCGGAATGTTGTCCGAGCCGGGTGGGGCAACCATTGCGAACAGCGCGGGCAGCATGGCGGTCAGCATGGTGCCGATGTTCTGCGCGATg                                                                                                   <  6:326980/149‑1 (MQ=255)                                                        gCTGCCAGGGCACACACGCCGGTGATGAAGAAGGCCAGCCCACCGACTACCAGCGGAATGTTGTCCGAGCCGGGTGGGGCAACCATTGCGAACAGCGCGGGCAGCATGGCGGTCa                                                                                                                             <  6:246765/115‑1 (MQ=255)                                                        gCTGCCAGGGCACACACGCCGGTGATGAAGAAGGCCAGCCCACCGACTACCAGCGGAATGTTGTCCGAGCCGGGTGGGGCAACCATTGCGAACAGCGCGGGCAGCATGGCGGTCa                                                                                                                             >  5:246765/1‑115 (MQ=255)                                                               gggCACACACGCCGGTGATGAAGAAGGCCAGCCCACCGACTACCAGCGGAATGTTGTCCGAGCCGGGTGGGGCAACCATTGCGAACAGCGCGGGCAGCATGGCGGTCAGCATGGTGCCGATGTTCTGCGCGATGGCCATGGCGGTAAcg                                                                                    <  4:11332/149‑1 (MQ=255)                                                                   acacacGCCGGTGATGAAGAAGGCCAGCCCACCGACTACCAGCGGAATGTTGTCCGAGCCGGGTGGGGCAACCATTGCGAACAGCGCGGGCAGCATGGCGGTCAGCATGGTGCCGATGTTCTGCGCGATGGCCATGGCGGTAACGCgg                                                                                 >  3:250303/1‑148 (MQ=255)                                                                             gTGATGAAGAAGGCCAGCCCACCGACTACCAGCGGAATGTTGTCCGAGCCGAGTGGGGCAACCATTGCGAACAGCGCGGGCAGCATGGCGGTCAGCATGGTGCCGATGTTCTGCGCGATGGCCATGGCGGTAACGCGGTAGCGGGtgtg                                                                      <  7:303683/149‑1 (MQ=255)                                                                              tgatgaAGAAGGCCAGCCCACCGACTCCCAGCGGAATGTTGTCCGAGCCGGGTGGGGCAACCATTGCGAACAGCGCGGGCAGCATGGCGGTCAGCATGGTGCCGATGTTCTGCGCGATGGCCATGGCGGTAACGCGGAAGCGGgtgt                                                                       <  7:146674/147‑1 (MQ=255)                                                                              tgatgaAGAAGGCCAGCCCACCGACTACCAGCGGAATGTTGTCCGAGCCGGGTGGGGCAACCATTGCGAACAGCGCGGGCAGCATGGCGGTCAGCATGGTGCCGATGTTCTGCGCGATGGCCATGGCGGTAACGCGGTAGCGGGtgtg                                                                      >  5:378828/1‑148 (MQ=255)                                                                                atgaAGAAGGCCAGCCCACCGACTACCAGCGGAATGTTGTCCGAGCCGGGTGGGGCAACCATTGCGAACAGCGCGGGCAGCATGGCGGTCAGCATGGTGCCGATGTTCTGCGCGATGGCCATGGCGGTAACGCGGTAGCGGGTGTGGaa                                                                   >  1:290652/1‑149 (MQ=255)                                                                                 tgaAGAAGGCCAGCCCACCGACTACCAGCGGAATGTTGTCCGAGCCGGGTGGGGCAACCATTGCGAACAGCGCGGGCAGCATGGCGGTCAGCATGGTGCCGATGTTCTGCGCGATGGCCATGGCGGTAACGCGGTAGCGGGTGTGGAAc                                                                  <  4:250303/149‑1 (MQ=255)                                                                                     gaagGCCAGCCCACCGACTACCAGCGGAATGTTGTCCGAGCCGGGTGGGGCAACCATTGCGAACAGCGCGGGCAGCATGGCGGTCAGCATGGTGCCGATGTTCTGCGCGATGGCCATGGCGGTAACGCGGTAGCGGGTGTGGAACAGct                                                              >  4:74065/1‑149 (MQ=255)                                                                                        ggCCAGCCCACCGACTACCAGCGGAATGTTGTCCGAGCCGGGTGGGGCAACCATTGCGAACAGCGCGGGCAGCATGGCGGTCAGCATGGTGCCGATGTTCTGCGCGATGGCCATGGCGGTAACGCGGTAGCGGGTGTGGAACAGCTCTg                                                           >  1:361537/1‑149 (MQ=255)                                                                                         gCCAGCCCACCGACTACCAGCGGAATGTTGTCCGAGCCGGGTGGGGCAACCATTGCGAACAGCGCGGGCAGCATGGCGGTCAGCATGGTGCCGATGTTCTGCGCGATGGCCATGGCGGTAACGCGGTAGCGGGTGTGGAACAGCTCTgg                                                          <  2:290652/149‑1 (MQ=255)                                                                                              cccACCGACTACCAGCGGAATGTTGTCCGAGCCGGGTGGGGCAACCATTGCGAACAGCGCGGGCAGCATGGCGGTCAGCATGGTGCCGATGTTCTGCGCGATGGCCATGGCGGTAACGCGGTAGCGGGTGTGGAACAGCTCTGGGTAGa                                                     <  8:169422/149‑1 (MQ=255)                                                                                               ccACCGACTACCAGCGGAATGTTGTCCGAGCCGGGTGGGGCAACCATTGCGAACAGCGCGGGCAGCATGGCGGTCAGCATGGTGCCGATGTTCTGCGCGATGGCCATGGCGGTAACGCGGTAGCGGGTGTGGAACAGCTCTGGGTAGaa                                                    <  7:62932/149‑1 (MQ=255)                                                                                                cACCGTCTACCAGCGGAATGTTGTCCGAGCCGGTTGGTGCAAGCATTGCGAACATCGCGGGCATCATGGCGGTCAGCATGGTGCCGATGTTCTGCGCGATGGCCATGGCGTTAACGCGGTAGCGGGTGTGGAACAGCTATGGGtt                                                       <  4:117726/145‑2 (MQ=255)                                                                                                cACCGACTACCAGCGGAATGTTGTCCGAGCCGGGTGGGGCAACCATTGCGAACAGCGCGGGCAGCATGGCGGTCAGCATGGTGCCGATGTTCTGCGCGATGGCCATGGCGGTAACGCGGTAGCGGGTGTGGAACAGCTCTGGGTa                                                       >  3:117726/1‑145 (MQ=255)                                                                                                cACCGACTACCAGCGGAATGTTGTCCGAGCCGGGTGGGGCAACCATTGCGAACAGCGCGGGCAGCATGGCGGTCAGCATGGTGCCGATGTTCTGCGCGATGGCCATGGCGGTAACGCGGTAGCGGGTGTGGAACAGCTCTGGGTAGAAg                                                   <  6:378828/149‑1 (MQ=255)                                                                                                 aCCGACTACCAGCGGAATGTTGTCCGAGCCGGGTGGGGCAACCATTGCGAACAGCGCGGgcag                                                                                                                                        <  5:266383/63‑1 (MQ=255)                                                                                                 aCCGACTACCAGCGGAATGTTGTCCGAGCCGGGTGGGGCAACCATTGCGAACAGCGCGGgcag                                                                                                                                        >  6:266383/1‑63 (MQ=255)                                                                                                      cTACCAGCGGAATGTTGTCCGAGCCGGGTGGGGCAACCATTGCGAACAGCGCGGGCAGCATGGCGGTCAGCATGGTGCCGATGTTCTGCGCGATGGCCATGGCGGTAACGCGGTAGCGGGTGTGGAACAGCTCTGGGTAGAAGCTTggg                                             <  4:162472/149‑1 (MQ=255)                                                                                                          cAGCGGAATGTTGTCCGAGCCGGGTGGGGCAACCATTGCGAACAGCGCGGGCAGCATGCCGGTCAGCAAGGTGCCGATGTTCTGCGCTATGGCCATCGCGGTAACGAGGTAGCGGGTGTGGAACAGCTCTGGTTAGAAGCTTGGTAaca                                         >  4:36509/1‑149 (MQ=255)                                                                                                           aGCGGAATGTTGTCCGAGCCGGGTGGGGCAACCATTGCGAACAGCGCGGGCAGCATGGCGGTCAGCATGGTGCCGATGTTCTGCGCGATGGCCATGGCGGTAACGCGGTAGCGGGTGTGGAACAGCTCTGGGTAGAAGCTTGGGAacac                                        >  5:180289/1‑149 (MQ=255)                                                                                                               gAATGTTGTCCGAGCCGGGTGGGGCAACCATTGCGAACAGCGCGGGCAGCATGGCGGTCAGCATGGTGCCGATGTTCTGCGCGATGGCCATGGCGGTAACGCGGTAGCGGGTGTGGAACAGCTCTGGGTAGAAGCTTGGGAACACcgcg                                    >  2:240405/1‑149 (MQ=255)                                                                                                                    ttgtCCGAGCCGGGTGGGGCAACCATTGCGAACAGCGCGGGCAGCATGGCGGTCAGCATGGTGCCGATGTTCTGCGCGATGGCCATGGCGGTAACGCGGTAGCGGGTGTGGAACAGCTCTGGGTAGAAGCTTgg                                              <  3:367923/134‑1 (MQ=255)                                                                                                                    ttgtCCGAGCCGGGTCGGGCAACCATTGCGAACAGCGCGGGCAGCATGGCGGTCAGCATGGTGCCGATGTTCTGCGCGATGGCCATGGCGGTAACGCGGTAGCGGGTGTGGAACAGCTCTGGGTAGAAGCTTgg                                              >  4:367923/1‑134 (MQ=255)                                                                                                                       tCCGAGCCGGGTGGGGCAACCATTGCGAACAGCGCGGGCAGCATGGCGGTCAACATGGTGCCGATGTTCTGCGCGATGGCCATGGCGGTAACGCGGTa                                                                               <  8:298265/98‑1 (MQ=255)                                                                                                                       tCCGAGCCGGGTGGGGCAACCATTGCGAACAGCGCGGGCAGCATGGCGGTCAACATGGTGCCGATGTTCTGCGCGATGGCCATGGCGGTAACGCGGTa                                                                               >  7:298265/1‑98 (MQ=255)                                                                                                                           aGCCGGGTGGGGCAACCATTGCGAACAGCGCGGGCAGCATGGCGGTCAGCATGGTGCCGATGTTCTGCGCGATGGCCATGGCGGTAACGCGGTAGCGGGTGTGGAACAGCTCTGGGTAGAAGCTTGGGAACACCGCGTTGTAACCCTgg                        <  5:146971/149‑1 (MQ=255)                                                                                                                             ccGGGTGGGGCAACCATTGCGAACAGCGCGGGCAGCATGGCGGTCAGCATGGTGCCGATGTTCTGCGCGATGGCCATGGCGGTAACGCGGTAGCGGGTGTGGAACAGCTCTGGGTAGAAGCTTGGGAACACCGCGTTGTAACCCTGGTa                      <  3:74065/149‑1 (MQ=255)                                                                                                                               gggTGGGGCAACCATTGCGAACAGCGCGGGCAGCATGGCGGTCAGCATGGTGCCGATGTTCTGCGCGATGGCCATGGCGGTAACGCGGTAGCGGGTGTGGAACAGCTCTGGGTAGAAGCTTGGGAACACCGCGTTGTAACCCTGGTAGa                    >  4:69662/1‑149 (MQ=255)                                                                                                                                     ggCAACCATTGCGAACAGCGCGGGCAGCATGGCGGTCAGCATGGTGCCGATGTTCTGCGCGATGGCCATGGCGGTAACGCGGTAGCGGGTGTGGAACAGCTCTGGGTAGAAGCTTGGGAACACCGCGTTGTAACCCTGGTAGACCATGc              >  1:189455/1‑149 (MQ=255)                                                                                                                                     ggCAACCATTGCGAACAGCGCGGGCAGCATGGCGGTCAGCATGGTGCCGATGTTCTGCGCGATGGCCATGGCGGTAACGCGGTAGCGGGTGTGGAACAGCTCTGGGTAGAAGCTTGGGAACACCGCGTTGTAACCCTGGTAGACCATGc              >  7:190067/1‑149 (MQ=255)                                                                                                                                      gCAACCATTGCGAACAGCGCGGGCAGCATGGCGGTCAGCATGGTGCCGATGTTCTGCGCGATGGCCATGGCGGTAACGCGGTAGCGGGTGTGGAACAGCTCTGGGTAGAAGCTTGGGAACACCGCGTTGt                                >  6:369152/1‑130 (MQ=255)                                                                                                                                      gCAACCATTGCGAACAGCGCGGGCAGCATGGCGGTCAGCATGGTGCCGATGTTCTGCGCGATGGCCATGGCGGTAACGCGGTAGCGGGTGTGGAACAGCTCTGGGTAGAAGCTTGGGAACACCGCGTTGt                                <  5:369152/130‑1 (MQ=255)                                                                                                                                            aTTGCGAACAGCGCGGGCAGCATGGCGGTCAGCATCGTGCCGAtgttcgcaatggttgccccacccggctcggacaacattccgctggtagtcggtgggctggccttcttcatcaccggcgtgtgtgccctggcagcctacattgcccc       <  1:55864‑M2/149‑107 (MQ=255)                                                                                                                                             ttGCGAACAGCGCGGGCAGCATGGCGGTCAGCATGGTGCCGAtgttcgcaatggttgccccacccggctcggacaacattccgctggtagtcggtgggctggccttcttcatcaccggcgtgtgtgccctggcagtctacattgccccg      <  3:104214‑M2/149‑108 (MQ=255)                                                                                                                                                 gAACAtcggcaccatgctgaccgccatgctgcccgcgctgttcgcaatggttgccccacccggctcggacaacattccgctggtagtcggtgggctggccttcttcatcaccggcgtgtgtgccctggcagcctacattgccccggaaa  <  3:162472‑M1/149‑145 (MQ=255)                                                                                                                                                     |                                                                                                                                                 GTCCGGGTTGCCCAGGTCTTCCATCGCCAGGCGGTGGGTTTCCGGGGCAATGTAGGCTGCCAGGGCACACACGCCGGTGATGAAGAAGGCCAGCCCACCGACTACCAGCGGAATGTTGTCCGAGCCGGGTGGGGCAACCATTGCGAACAGCGCGGGCAGCATGGCGGTCAGCATGGTGCCGATGTTCTGCGCGATGGCCATGGCGGTAACGCGGTAGCGGGTGTGGAACAGCTCTGGGTAGAAGCTTGGGAACACCGCGTTGTAACCCTGGTAGACCATGCCCCACATGACGA  >  NC_002947/2899325‑2899617

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.