New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 3911555 | 43 (0.730) | 4 (0.070) | 4/244 | NT | 8.4% | intergenic (+25/‑100) | PP_3451/PP_3452 | hypothetical protein/GGDEF domain‑containing protein |
? | NC_002947 | = 3911606 | 47 (0.840) | intergenic (+76/‑49) | PP_3451/PP_3452 | hypothetical protein/GGDEF domain‑containing protein |
GCGCCGGAGCAGGCGTTTCGGGCGGAGCCCGCCGAGCCCAGGGTGGGTAGCGGGTGCCATGCCGAGGCAGTGTTTGCCTTGCGCTACCGGCCCTGGGCCCGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGATAAACCCACAGGTCCCCCA‑CACCGTACGGTCCCTGTAGGAGCGGGTTTACCCGCGAAAGGTCCAAGCCTGAAAAAGTAGTAGCCTCAGGAGCCCACCGATGTTCAAGACCATCGAAGCCCACATACGCCAGCAGGTCGCGCC > NC_002947/3911408‑3911698 | gcgcCGGAGCAGGCGTTTCGGGCGGAGCCCGCCGAGCCCAGGGTGGGTAGCGGGTGCCATGCCGAGGCAGTGTTTGCCTTGCGCTACCGGCCCTGGGCCCGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGa > 8:249672/1‑149 (MQ=255) gcgcCGGAGCAGGCGTTTCGGGCGGAGCCCGCCGAGCCCAGGGTGGGTAGCGGGTGCCATGCCGAGGCAGTGTTTGCCTTGCGCTACCGGCCCTGGGCCCGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGa < 3:194190/149‑1 (MQ=255) ggAGCAGGCGTTTCGGGCGGAGCCCGCCGAGCCCAGGGTGGGTAGCGGGTGCCATGCCGAGGCAGTGTTTGCCTTGCGCTACCGGCCCTGGGCCCGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGATAAAc > 6:295714/1‑149 (MQ=255) gCGTTTCGGGCGGAGCCCGCCGAGCCCAGGGTGGGTAGCGGGTGCCATGCCGAGGCAGTGTTTGCCTTGCGCTACCGGCCCTGGGCCCGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGATAAACCCACAgg > 3:241606/1‑149 (MQ=255) gCGTTTCGGGCGGAGCCCGCCGAGCCCAGGGTGGGTAGCGGGTGCCATGCCGAGGCAGTGTTTGCCTTGCGCTACCGGCCCTGGGCCCGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGATAAACCCACAgg > 1:63085/1‑149 (MQ=255) gTTTCGGGCGGAGCCCGCCGAGCCCAGGGTGGGTAGCGGGTGCCATGCCGAGGCAGTGTTTGCCTTGCGCTACCGGCCCTGGGCCCGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGgtaaacccgctccta > 1:122071‑M1/1‑134 (MQ=255) gTTTCGGGCGGAGCCCGCCGAGCCCAGGGTGGGTAGCGGGTGCCATGCCGAGGCAGTGTTTGCCTTGCGCTACCGGCCCTGGGCCCGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGATaaa < 1:73417/139‑1 (MQ=255) gTTTCGGGCGGAGCCCGCCGAGCCCAGGGTGGGTAGCGGGTGCCATGCCGAGGCAGTGTTTGCCTTGCGCTACCGGCCCTGGGCCCGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGATaaa > 2:73417/1‑139 (MQ=255) tCGGGCGGAGCCCGCCGAGCCCAGGGTGGGTAGCGGGTGCCATGCCGAGGCAGTGTTTGCCTTGCGCTACCGGCCCTGGGCCCGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGATAAACCCACAGGTccc < 7:127998/148‑1 (MQ=255) gCGGAGCCCGCCGAGCCCAGGGTGGGTAGCGGGTGCCATGCCGAGGCAGTGTTTGCCTTGCGCTACCGGCCCTGGGCCCGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGATAAACCCACAGGTccc > 3:132919/1‑144 (MQ=255) gCGGAGCCCGCCGAGCCCAGGGTGGGTAGCGGGTGCCATGCCGAGGCAGTGTTTGCCTTGCGCTACCGGCCCTGGGCCCGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGATAAACCCACAGGTccc < 4:132919/144‑1 (MQ=255) gCGGAGCCCGCCGAGCCCAGGGTGGGTAGCGGGTGCCATGCCGAGGCAGTGTTTGCCTTGCGCTACCGGCCCTGGGCCCGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGATAAACCCACAGGTACCCca‑ca > 2:349676/1‑149 (MQ=255) gCCCGCCGAGCCCAGGGTGGGTAGCGGGTGCCATGCCGAGGCAGTGTTTGCCTTGCGCTACCGGCCCTGGGCCCGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGATAAACCCACAGGTCCCCCA‑CACCGTa > 1:265041/1‑149 (MQ=255) cgccgAGCCCAGGGTGGGTAGCGGGTGCCATGCCGAGGCAGTGTTTGCCTTGCGCTACCGGCCCTGGGCCCGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGATAAACCCACAGGTCCCCCA‑CACCGTACgg < 2:63085/149‑1 (MQ=255) gggtAGCGGGTGCCATGCCGAGGCAGTGTTTGCCTTGCGCTACCGGCCCTGGGCCCGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGATAAACCCACAGGTCCCCCA‑CACCGTACGGTCCCTGTAGGAGCgg < 7:249672/149‑1 (MQ=255) gtAGCGGGTGCCATGCCGAGGCAGTGTTTGCCTTGCGCTACCGGCCCTGGGCCCGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGgtaaacccgctcctacagggaccgtacggtgtgggggacctgtgggt < 2:122071‑M1/149‑48 (MQ=255) gtAGCGGGTGCCATGCCGAGGCAGTGTTTGCCTTGCGCTACCGGCCCTGGGCCCGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGATAAACCCACAGGTCCCCCA‑CACCGTACGGTCCCTGTAGGAGCGGGt < 5:257173/149‑1 (MQ=255) gtAGCGGGTGCCATGCCGAGGCAGTGTTTGCCTTGCGCTACCGGCCCTGGGCCCGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGATAAACCCACAGGTCCCCCA‑CACCGTACGGTCCCTGTAGGAGCGGGt > 8:47715/1‑149 (MQ=255) gCGGGTGCCATGCCGAGGCAGTGTTTGCCTTGCGCTACCGGCCCTGGGCCCGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGATAAACCCACAGGTCCCCCA‑CACCGTACGGTCCCTGTAGGAGCGGGttt < 1:349676/148‑1 (MQ=255) gCCATGCCGAGGCAGTGTTTGCCTTGCGCTACCGGCCCTGGGCCCGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGATAAACCCACAGGTCCCCCA‑CACCGTACGGTCCCTGTAGGAGCGGGTTTACccgcg > 7:267892‑M2/1‑144 (MQ=255) cATGCCGAGGCAGTGTTTGCCTTGCGCTACCGGCCCTGGGCCCGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGATAAACCCACAGGTCCCCCA‑CACCGTACGGTCCCTGTAGGAGCGGGTTTACccgcgaa > 7:47715‑M2/1‑142 (MQ=255) aTGCCGAGGCAGTGTTTGCCTTGCGCTACCGGCCCTGGGCCCGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGATAAACCCACAGGTCCCCCA‑CACCGTACGGTCCCTGTAGGAGCGGGTTTACccgcga < 6:217115‑M2/147‑7 (MQ=255) aTGCCGAGGCAGTGTTTGCCTTGCGCTACCGGCCCTGGGCCCGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGATAAACCCACAGGTCCCCCA‑CACCGTACGGTCCCTGTAGGAGCGGGTTTACCCGCGaaa < 3:260051/149‑1 (MQ=255) ccGAGGCAGTGTTTGCCTTGCGCTACCGGCCCTGGGCCCGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGATAAACCCACAGGTCCCCCA‑CACCGTACGGTCCCTGTAGGAGCGGGTTTACCCGCGAAAGGt < 4:241606/149‑1 (MQ=255) cGAGGCAGTGTTTGCCTTGCGCTACCGGCCCTGGGCCCGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGATAAACCCACAg > 6:125413/1‑98 (MQ=255) cGAGGCAGTGTTTGCCTTGCGCTACCGGCCCTGGGCCCGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGATAAACCCACAg < 5:125413/98‑1 (MQ=255) aGGCAGTGTTTGCCTTGCGCTACCGGCCCTGGGCCCGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGATAAACCCACAGGTCCCCCA‑CACCGTACGGTCCCTGTAGGAGCGGGTTTACCCGCGAAAGGTcc > 7:9013/1‑148 (MQ=255) cAGTGTTTGCCTTGCGCTACCGGCCCTGGGCCCGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGATAAACCCACAGGTCCCCCA‑CACCGTACGGTCCCTGTAGGAGCGGGTTTACCCGCGAAAGGTCCAAGc > 5:79550/1‑149 (MQ=255) gCCTTGCGCTACCGGCCCTGGGCCCGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGATAAACCCACAGGTCCCCCACCACCGTACGGTCCCTGTAGGAGCGGGTTTACCCGCGAAAGGTCCAAGCCTGaaa < 1:283188/148‑1 (MQ=255) ccTTGCGCTACCGGCCCTGGGCCCGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGATAAACCCACAGGTCCCCCA‑CCCCGTACGGTCCCTGTAGGAGCGGGTTTACCCGCGAAAGGTCCAAGCCTGaaaaa < 1:283012/148‑1 (MQ=255) ttGCGCTACCGGCCCTGGGCCCGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGATAAACCCACAGGTCCCCCA‑CACCGTACGGTCCCTGTAGGAGCGGGTTTACCCGCGAAAg < 6:76088/130‑1 (MQ=255) acccgcTACCCACCCTGGGCTCGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGATAAACCCACAGGTCCCCCA‑CACCGTACGGTCCCTGTAGGAGCGGGTTTACCCGCGAAAGGTCCAAGCCTGAAAAagta < 8:124586/146‑1 (MQ=255) gcgcTACCGGCCCTGGGCCCGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGTATAAACCCACAGGTCCCCCA‑CACCGTACGGTCCCTGTAGGAGCGGGTTTACCCGCGAAAGGTCCAAGCCTGAAAAagta < 4:247069/147‑1 (MQ=255) gcgcTACCGGCCCTGGGCCCGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGATAAACCCACAGGTCCCCCA‑CACCGTACGGTCCCTGTAGGAGCGGGTTTACCCGCGAAAGGTCCAAGCCTGAAAAagta < 6:79550/147‑1 (MQ=255) gcgcTACCGGCCCTGGGCCCGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGATAAACCCACAGGTCCCCCA‑CACCGTACGGTCCCTGTAGGAGCGGGTTTACCCGCGAAAGGTCCAAGCCTGAAAAagta < 5:217115/147‑1 (MQ=255) cgcTACCGGCCCTGGGCCCGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGATAAACCCACAGGTCCCCCA‑CACCGTACGGTCCCTGTAGGAGCGGGTTTACCCGCGAAAGGTCCAAGCCTGAAAAagtagt < 8:9013/148‑1 (MQ=255) cgcTACCGGCCCTGGGCCCGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGATAAACCCACAGGTCCCCCA‑CACCGTACGGTCCCTGTAGGAGCGGGTTTACCCGCGAAAGGTCCAAGCCTGAAAAAgtagta < 8:66311/149‑1 (MQ=255) tACCGGCCCTGGGCCCGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGgtaaacccgctcctacagggaccgtacggtgtgggggacctgtgggtttatccgcgaaga < 1:154649‑M1/124‑61 (MQ=255) tACCGGCCCTGGGCCCGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGgtaaacccgctcctacagggaccgtacggtgtgggggacctgtgggtttatccgcgaaga > 2:154649‑M1/1‑64 (MQ=255) tACCGGCCCTGGGCCCGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGATAAACCCACAGGTCCCCCA‑CACCGTACGGTCCCTGTAGGAGCGGGTTTACCCGCGAAAGGTCCAAGCCTGAAAAAGTAGTAGcc > 6:193347/1‑149 (MQ=255) cccacccTGGGCTCGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGATAAACCCACAGGTCCCCCA‑CACCGTACGGTCCCTGTAGGAGCGGGTTTACCCGCGAAAGGTCCAAGCCTGAAAAAGTAGTAGCCTc < 8:187085/145‑1 (MQ=255) cGGCCCTGGGCCCGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGATAAACCCACAGGTCCCCCA‑CACCGTACGGTCCCTGTAGGAGCGGGTTTACCCGCGAAAGGTCCAAGCCTGAAAAAGTAGTAGCCTc < 4:198851/148‑1 (MQ=255) cGGCCCTGGGCCCGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGATAAACCCACAGGTCCCCCA‑CACCGTACGGTCCCTGTAGGAGCGGGTTTACCCGCGAAAGGTCCAAGCCTGAAAAAGTAGTAGCCTc > 3:198851/1‑148 (MQ=255) ccGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGATAAACCCACAGGTCCCCCA‑CACCGTACGGTCCCTGTAGGAGCGGGTTTACCCGCGAAAGGTCCAAGCCTGAAAAAGTAGTAGCCTCAGGAGCCCAcc > 7:179860/1‑148 (MQ=255) gggTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGATAAACCCACAGGTCCCCCA‑CACCGTACGGTCCCTGTAGGAGCGGGTTTACCCGCGAAAGGTCCAAGCCTGAAAAAGTAGTAGCCTCAGGAGCCCACCGATg > 1:137980/1‑149 (MQ=255) gCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGATAAACCCACAGGTCCCCCA‑CACCGTACGGTCCCTGTAGGAGCGGGTTTACCCGCGAAAGGTCCAAGCCTGAAAAAGTAGTAGCCTCAGGAGCCCACCGATGTTCAAGa < 5:193347/147‑1 (MQ=255) aaTGAATTACCAGGGCCGGCCTCTTCGCGGATAAACCCACAGGTCCCCCA‑CACCGTACGGTCCCTGTAGGAGCGGGTTTACCCGCGAAAGGTCCAAGCCTGAAAAAGTAGTAGCCTCAGGAGCCCACCGATGTTCAAGACCATCGAAGc < 8:179860/149‑1 (MQ=255) aaTTACCAGGGCCGGCCTCTTCGCGGATAAACCCACAGGTCCCCCA‑CACCGTACGGTCCCTGTAGGAGCGGGTTTACCCGCGAAAGGTCCAAGCCTGAAAAAGTAGTAGCCTCAGTAGCCCACCGATGTTCAAGACCATCGAAGCCca < 2:265041/148‑1 (MQ=255) aaTTACCAGGGCCGGCCTCTTCGCGGATAAACCCACAGGTCCCCCA‑CACCGTACGGTCCCTGTAGGAGCGGGTTTACCCGCGAAAGGTCCAAGCCTGAAAAAGTAGTAGCCTCAGGAGCCCACCGATGTTCAAGACCATCGAAGCCca < 5:295714/148‑1 (MQ=255) ttACCAGGGCCGGCCTCTTCGCGGATAAACCCACAGGTCCCCCA‑CACCGTACGGTCCCTGTAGGAGCGGGTTTACCCGCGAAAGGTCCAAGCCTGAAAAAGTAGTAGCCTCAGGAGCCCACCGATGTTCAAGACCATCGAAGCCcaca > 3:24866/1‑148 (MQ=255) ccAGGGCCGGCCTCTTCGCGGATAAACCCACAGGTCCCCCA‑CACCGTACGGTCCCTGTAGGAGCGGGTTTACCCGCGAAAGGTCCAAGCCTGAAAAAGTAGTAGCCTCAGGAGCCCACCGATGTTCAAGACCATCGAAGCCCACATACg > 7:325047/1‑149 (MQ=255) ccAGGGCCGGCCTCTTCGCGGATAAACCCACAGGTCCCCCA‑CACCGTACGGTCCCTGTAGGAGCGGGTTTACCCGCGAAAGGTCCAAGCCTGAAAAAGTAGTAGCCTCAGGAGCCCACCGATGTTCAAGACCATCGAAGCCCACATACg > 2:154529/1‑149 (MQ=255) ctctTCGCGGATAAACCCACAGGTCCCCCA‑CACCGGACGGTCCCTGTAGGAGCGGGTTTACCCGCGAAAGGTCAAAGCCTGAAAAAGTAGTAGCCTCAGGAGCCCACCGATGTTCAAGACCATCGAAGCCCACATACGCCCGCAGGTcg > 7:228931/1‑149 (MQ=255) tctTCGCGGATAAACCCACAGGTCCCCCA‑CACCGTACGGTCCCTGTAGGAGCGGGTTTACccgcgaagaggccggccctggtaattcattgctgtggcaagataccccgggcccagggccggta > 2:154649‑M2/1‑60 (MQ=255) tctTCGCGGATAAACCCACAGGTCCCCCA‑CACCGTACGGTCCCTGTAGGAGCGGGTTTACccgcgaagaggccggccctggtaattcattgctgtggcaagataccccgggcccagggccggta < 1:154649‑M2/124‑65 (MQ=255) ttCGCGGgtaaacccgctcctacagggaccgtacggtgtgggggacctgtgggtttatccgcgaagaggccggccctggtaattcattgctgtggcaagataccccgggcccagggccggtagcgcaaggcaaacactgcctcggcatg > 7:47715‑M1/1‑7 (MQ=255) ttCGCGGATAAACCCACAGGTCCCCCA‑CACCGTACGGTCCCTGTAGGAGCGGGTTTACCCGCGAAAGGTCCAAGCCTGAAAAAGTAGTAGCCTCAGGAGCCCACCGATGTTCAAGACCATCGAAGCCCACATACGCCAGCAGGTCgcgc > 3:67149/1‑149 (MQ=255) tCGCGGgtaaacccgctcctacagggaccgtacggtgtgggggacctgtgggtttatccgcgaagaggccggccctggtaattcattgctgtggcaagataccccgggcccagggccggtagcgcaaggcaaacactgcctcggcat < 6:217115‑M1/147‑142 (MQ=255) cgcgGgtaaacccgctcctacagggaccgtacggtgtgggggacctgtgggtttatccgcgaagaggccggccctggtaattcattgctgtggcaagataccccgggcccagggccggtagcgcaaggcaaacactgcctcggcatggc > 7:267892‑M1/1‑5 (MQ=255) | GCGCCGGAGCAGGCGTTTCGGGCGGAGCCCGCCGAGCCCAGGGTGGGTAGCGGGTGCCATGCCGAGGCAGTGTTTGCCTTGCGCTACCGGCCCTGGGCCCGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGATAAACCCACAGGTCCCCCA‑CACCGTACGGTCCCTGTAGGAGCGGGTTTACCCGCGAAAGGTCCAAGCCTGAAAAAGTAGTAGCCTCAGGAGCCCACCGATGTTCAAGACCATCGAAGCCCACATACGCCAGCAGGTCGCGCC > NC_002947/3911408‑3911698 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |