New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 391155543 (0.730)4 (0.070) 4/244 NT 8.4% intergenic (+25/‑100) PP_3451/PP_3452 hypothetical protein/GGDEF domain‑containing protein
?NC_002947 = 3911606 47 (0.840)intergenic (+76/‑49) PP_3451/PP_3452 hypothetical protein/GGDEF domain‑containing protein

GCGCCGGAGCAGGCGTTTCGGGCGGAGCCCGCCGAGCCCAGGGTGGGTAGCGGGTGCCATGCCGAGGCAGTGTTTGCCTTGCGCTACCGGCCCTGGGCCCGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGATAAACCCACAGGTCCCCCACACCGTACGGTCCCTGTAGGAGCGGGTTTACCCGCGAAAGGTCCAAGCCTGAAAAAGTAGTAGCCTCAGGAGCCCACCGATGTTCAAGACCATCGAAGCCCACATACGCCAGCAGGTCGCGCC  >  NC_002947/3911408‑3911698
                                                                                                                                                   |                                                                                                                                                
gcgcCGGAGCAGGCGTTTCGGGCGGAGCCCGCCGAGCCCAGGGTGGGTAGCGGGTGCCATGCCGAGGCAGTGTTTGCCTTGCGCTACCGGCCCTGGGCCCGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGa                                                                                                                                                 >  8:249672/1‑149 (MQ=255)
gcgcCGGAGCAGGCGTTTCGGGCGGAGCCCGCCGAGCCCAGGGTGGGTAGCGGGTGCCATGCCGAGGCAGTGTTTGCCTTGCGCTACCGGCCCTGGGCCCGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGa                                                                                                                                                 <  3:194190/149‑1 (MQ=255)
     ggAGCAGGCGTTTCGGGCGGAGCCCGCCGAGCCCAGGGTGGGTAGCGGGTGCCATGCCGAGGCAGTGTTTGCCTTGCGCTACCGGCCCTGGGCCCGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGATAAAc                                                                                                                                            >  6:295714/1‑149 (MQ=255)
            gCGTTTCGGGCGGAGCCCGCCGAGCCCAGGGTGGGTAGCGGGTGCCATGCCGAGGCAGTGTTTGCCTTGCGCTACCGGCCCTGGGCCCGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGATAAACCCACAgg                                                                                                                                     >  3:241606/1‑149 (MQ=255)
            gCGTTTCGGGCGGAGCCCGCCGAGCCCAGGGTGGGTAGCGGGTGCCATGCCGAGGCAGTGTTTGCCTTGCGCTACCGGCCCTGGGCCCGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGATAAACCCACAgg                                                                                                                                     >  1:63085/1‑149 (MQ=255)
              gTTTCGGGCGGAGCCCGCCGAGCCCAGGGTGGGTAGCGGGTGCCATGCCGAGGCAGTGTTTGCCTTGCGCTACCGGCCCTGGGCCCGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGgtaaacccgctccta                                                                                                                                   >  1:122071‑M1/1‑134 (MQ=255)
              gTTTCGGGCGGAGCCCGCCGAGCCCAGGGTGGGTAGCGGGTGCCATGCCGAGGCAGTGTTTGCCTTGCGCTACCGGCCCTGGGCCCGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGATaaa                                                                                                                                             <  1:73417/139‑1 (MQ=255)
              gTTTCGGGCGGAGCCCGCCGAGCCCAGGGTGGGTAGCGGGTGCCATGCCGAGGCAGTGTTTGCCTTGCGCTACCGGCCCTGGGCCCGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGATaaa                                                                                                                                             >  2:73417/1‑139 (MQ=255)
                 tCGGGCGGAGCCCGCCGAGCCCAGGGTGGGTAGCGGGTGCCATGCCGAGGCAGTGTTTGCCTTGCGCTACCGGCCCTGGGCCCGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGATAAACCCACAGGTccc                                                                                                                                 <  7:127998/148‑1 (MQ=255)
                     gCGGAGCCCGCCGAGCCCAGGGTGGGTAGCGGGTGCCATGCCGAGGCAGTGTTTGCCTTGCGCTACCGGCCCTGGGCCCGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGATAAACCCACAGGTccc                                                                                                                                 >  3:132919/1‑144 (MQ=255)
                     gCGGAGCCCGCCGAGCCCAGGGTGGGTAGCGGGTGCCATGCCGAGGCAGTGTTTGCCTTGCGCTACCGGCCCTGGGCCCGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGATAAACCCACAGGTccc                                                                                                                                 <  4:132919/144‑1 (MQ=255)
                     gCGGAGCCCGCCGAGCCCAGGGTGGGTAGCGGGTGCCATGCCGAGGCAGTGTTTGCCTTGCGCTACCGGCCCTGGGCCCGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGATAAACCCACAGGTACCCcaca                                                                                                                           >  2:349676/1‑149 (MQ=255)
                          gCCCGCCGAGCCCAGGGTGGGTAGCGGGTGCCATGCCGAGGCAGTGTTTGCCTTGCGCTACCGGCCCTGGGCCCGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGATAAACCCACAGGTCCCCCACACCGTa                                                                                                                      >  1:265041/1‑149 (MQ=255)
                             cgccgAGCCCAGGGTGGGTAGCGGGTGCCATGCCGAGGCAGTGTTTGCCTTGCGCTACCGGCCCTGGGCCCGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGATAAACCCACAGGTCCCCCACACCGTACgg                                                                                                                   <  2:63085/149‑1 (MQ=255)
                                            gggtAGCGGGTGCCATGCCGAGGCAGTGTTTGCCTTGCGCTACCGGCCCTGGGCCCGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGATAAACCCACAGGTCCCCCACACCGTACGGTCCCTGTAGGAGCgg                                                                                                    <  7:249672/149‑1 (MQ=255)
                                              gtAGCGGGTGCCATGCCGAGGCAGTGTTTGCCTTGCGCTACCGGCCCTGGGCCCGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGgtaaacccgctcctacagggaccgtacggtgtgggggacctgtgggt                                                                                                   <  2:122071‑M1/149‑48 (MQ=255)
                                              gtAGCGGGTGCCATGCCGAGGCAGTGTTTGCCTTGCGCTACCGGCCCTGGGCCCGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGATAAACCCACAGGTCCCCCACACCGTACGGTCCCTGTAGGAGCGGGt                                                                                                  <  5:257173/149‑1 (MQ=255)
                                              gtAGCGGGTGCCATGCCGAGGCAGTGTTTGCCTTGCGCTACCGGCCCTGGGCCCGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGATAAACCCACAGGTCCCCCACACCGTACGGTCCCTGTAGGAGCGGGt                                                                                                  >  8:47715/1‑149 (MQ=255)
                                                 gCGGGTGCCATGCCGAGGCAGTGTTTGCCTTGCGCTACCGGCCCTGGGCCCGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGATAAACCCACAGGTCCCCCACACCGTACGGTCCCTGTAGGAGCGGGttt                                                                                                <  1:349676/148‑1 (MQ=255)
                                                       gCCATGCCGAGGCAGTGTTTGCCTTGCGCTACCGGCCCTGGGCCCGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGATAAACCCACAGGTCCCCCACACCGTACGGTCCCTGTAGGAGCGGGTTTACccgcg                                                                                         >  7:267892‑M2/1‑144 (MQ=255)
                                                         cATGCCGAGGCAGTGTTTGCCTTGCGCTACCGGCCCTGGGCCCGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGATAAACCCACAGGTCCCCCACACCGTACGGTCCCTGTAGGAGCGGGTTTACccgcgaa                                                                                       >  7:47715‑M2/1‑142 (MQ=255)
                                                          aTGCCGAGGCAGTGTTTGCCTTGCGCTACCGGCCCTGGGCCCGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGATAAACCCACAGGTCCCCCACACCGTACGGTCCCTGTAGGAGCGGGTTTACccgcga                                                                                        <  6:217115‑M2/147‑7 (MQ=255)
                                                          aTGCCGAGGCAGTGTTTGCCTTGCGCTACCGGCCCTGGGCCCGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGATAAACCCACAGGTCCCCCACACCGTACGGTCCCTGTAGGAGCGGGTTTACCCGCGaaa                                                                                      <  3:260051/149‑1 (MQ=255)
                                                             ccGAGGCAGTGTTTGCCTTGCGCTACCGGCCCTGGGCCCGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGATAAACCCACAGGTCCCCCACACCGTACGGTCCCTGTAGGAGCGGGTTTACCCGCGAAAGGt                                                                                   <  4:241606/149‑1 (MQ=255)
                                                              cGAGGCAGTGTTTGCCTTGCGCTACCGGCCCTGGGCCCGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGATAAACCCACAg                                                                                                                                      >  6:125413/1‑98 (MQ=255)
                                                              cGAGGCAGTGTTTGCCTTGCGCTACCGGCCCTGGGCCCGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGATAAACCCACAg                                                                                                                                      <  5:125413/98‑1 (MQ=255)
                                                                aGGCAGTGTTTGCCTTGCGCTACCGGCCCTGGGCCCGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGATAAACCCACAGGTCCCCCACACCGTACGGTCCCTGTAGGAGCGGGTTTACCCGCGAAAGGTcc                                                                                 >  7:9013/1‑148 (MQ=255)
                                                                   cAGTGTTTGCCTTGCGCTACCGGCCCTGGGCCCGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGATAAACCCACAGGTCCCCCACACCGTACGGTCCCTGTAGGAGCGGGTTTACCCGCGAAAGGTCCAAGc                                                                             >  5:79550/1‑149 (MQ=255)
                                                                           gCCTTGCGCTACCGGCCCTGGGCCCGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGATAAACCCACAGGTCCCCCACCACCGTACGGTCCCTGTAGGAGCGGGTTTACCCGCGAAAGGTCCAAGCCTGaaa                                                                       <  1:283188/148‑1 (MQ=255)
                                                                            ccTTGCGCTACCGGCCCTGGGCCCGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGATAAACCCACAGGTCCCCCACCCCGTACGGTCCCTGTAGGAGCGGGTTTACCCGCGAAAGGTCCAAGCCTGaaaaa                                                                     <  1:283012/148‑1 (MQ=255)
                                                                              ttGCGCTACCGGCCCTGGGCCCGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGATAAACCCACAGGTCCCCCACACCGTACGGTCCCTGTAGGAGCGGGTTTACCCGCGAAAg                                                                                     <  6:76088/130‑1 (MQ=255)
                                                                              acccgcTACCCACCCTGGGCTCGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGATAAACCCACAGGTCCCCCACACCGTACGGTCCCTGTAGGAGCGGGTTTACCCGCGAAAGGTCCAAGCCTGAAAAagta                                                                  <  8:124586/146‑1 (MQ=255)
                                                                                gcgcTACCGGCCCTGGGCCCGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGTATAAACCCACAGGTCCCCCACACCGTACGGTCCCTGTAGGAGCGGGTTTACCCGCGAAAGGTCCAAGCCTGAAAAagta                                                                  <  4:247069/147‑1 (MQ=255)
                                                                                gcgcTACCGGCCCTGGGCCCGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGATAAACCCACAGGTCCCCCACACCGTACGGTCCCTGTAGGAGCGGGTTTACCCGCGAAAGGTCCAAGCCTGAAAAagta                                                                  <  6:79550/147‑1 (MQ=255)
                                                                                gcgcTACCGGCCCTGGGCCCGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGATAAACCCACAGGTCCCCCACACCGTACGGTCCCTGTAGGAGCGGGTTTACCCGCGAAAGGTCCAAGCCTGAAAAagta                                                                  <  5:217115/147‑1 (MQ=255)
                                                                                 cgcTACCGGCCCTGGGCCCGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGATAAACCCACAGGTCCCCCACACCGTACGGTCCCTGTAGGAGCGGGTTTACCCGCGAAAGGTCCAAGCCTGAAAAagtagt                                                                <  8:9013/148‑1 (MQ=255)
                                                                                 cgcTACCGGCCCTGGGCCCGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGATAAACCCACAGGTCCCCCACACCGTACGGTCCCTGTAGGAGCGGGTTTACCCGCGAAAGGTCCAAGCCTGAAAAAgtagta                                                               <  8:66311/149‑1 (MQ=255)
                                                                                    tACCGGCCCTGGGCCCGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGgtaaacccgctcctacagggaccgtacggtgtgggggacctgtgggtttatccgcgaaga                                                                                      <  1:154649‑M1/124‑61 (MQ=255)
                                                                                    tACCGGCCCTGGGCCCGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGgtaaacccgctcctacagggaccgtacggtgtgggggacctgtgggtttatccgcgaaga                                                                                      >  2:154649‑M1/1‑64 (MQ=255)
                                                                                    tACCGGCCCTGGGCCCGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGATAAACCCACAGGTCCCCCACACCGTACGGTCCCTGTAGGAGCGGGTTTACCCGCGAAAGGTCCAAGCCTGAAAAAGTAGTAGcc                                                            >  6:193347/1‑149 (MQ=255)
                                                                                      cccacccTGGGCTCGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGATAAACCCACAGGTCCCCCACACCGTACGGTCCCTGTAGGAGCGGGTTTACCCGCGAAAGGTCCAAGCCTGAAAAAGTAGTAGCCTc                                                          <  8:187085/145‑1 (MQ=255)
                                                                                       cGGCCCTGGGCCCGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGATAAACCCACAGGTCCCCCACACCGTACGGTCCCTGTAGGAGCGGGTTTACCCGCGAAAGGTCCAAGCCTGAAAAAGTAGTAGCCTc                                                          <  4:198851/148‑1 (MQ=255)
                                                                                       cGGCCCTGGGCCCGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGATAAACCCACAGGTCCCCCACACCGTACGGTCCCTGTAGGAGCGGGTTTACCCGCGAAAGGTCCAAGCCTGAAAAAGTAGTAGCCTc                                                          >  3:198851/1‑148 (MQ=255)
                                                                                                  ccGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGATAAACCCACAGGTCCCCCACACCGTACGGTCCCTGTAGGAGCGGGTTTACCCGCGAAAGGTCCAAGCCTGAAAAAGTAGTAGCCTCAGGAGCCCAcc                                               >  7:179860/1‑148 (MQ=255)
                                                                                                     gggTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGATAAACCCACAGGTCCCCCACACCGTACGGTCCCTGTAGGAGCGGGTTTACCCGCGAAAGGTCCAAGCCTGAAAAAGTAGTAGCCTCAGGAGCCCACCGATg                                           >  1:137980/1‑149 (MQ=255)
                                                                                                              gCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGATAAACCCACAGGTCCCCCACACCGTACGGTCCCTGTAGGAGCGGGTTTACCCGCGAAAGGTCCAAGCCTGAAAAAGTAGTAGCCTCAGGAGCCCACCGATGTTCAAGa                                    <  5:193347/147‑1 (MQ=255)
                                                                                                                      aaTGAATTACCAGGGCCGGCCTCTTCGCGGATAAACCCACAGGTCCCCCACACCGTACGGTCCCTGTAGGAGCGGGTTTACCCGCGAAAGGTCCAAGCCTGAAAAAGTAGTAGCCTCAGGAGCCCACCGATGTTCAAGACCATCGAAGc                          <  8:179860/149‑1 (MQ=255)
                                                                                                                          aaTTACCAGGGCCGGCCTCTTCGCGGATAAACCCACAGGTCCCCCACACCGTACGGTCCCTGTAGGAGCGGGTTTACCCGCGAAAGGTCCAAGCCTGAAAAAGTAGTAGCCTCAGTAGCCCACCGATGTTCAAGACCATCGAAGCCca                       <  2:265041/148‑1 (MQ=255)
                                                                                                                          aaTTACCAGGGCCGGCCTCTTCGCGGATAAACCCACAGGTCCCCCACACCGTACGGTCCCTGTAGGAGCGGGTTTACCCGCGAAAGGTCCAAGCCTGAAAAAGTAGTAGCCTCAGGAGCCCACCGATGTTCAAGACCATCGAAGCCca                       <  5:295714/148‑1 (MQ=255)
                                                                                                                            ttACCAGGGCCGGCCTCTTCGCGGATAAACCCACAGGTCCCCCACACCGTACGGTCCCTGTAGGAGCGGGTTTACCCGCGAAAGGTCCAAGCCTGAAAAAGTAGTAGCCTCAGGAGCCCACCGATGTTCAAGACCATCGAAGCCcaca                     >  3:24866/1‑148 (MQ=255)
                                                                                                                               ccAGGGCCGGCCTCTTCGCGGATAAACCCACAGGTCCCCCACACCGTACGGTCCCTGTAGGAGCGGGTTTACCCGCGAAAGGTCCAAGCCTGAAAAAGTAGTAGCCTCAGGAGCCCACCGATGTTCAAGACCATCGAAGCCCACATACg                 >  7:325047/1‑149 (MQ=255)
                                                                                                                               ccAGGGCCGGCCTCTTCGCGGATAAACCCACAGGTCCCCCACACCGTACGGTCCCTGTAGGAGCGGGTTTACCCGCGAAAGGTCCAAGCCTGAAAAAGTAGTAGCCTCAGGAGCCCACCGATGTTCAAGACCATCGAAGCCCACATACg                 >  2:154529/1‑149 (MQ=255)
                                                                                                                                          ctctTCGCGGATAAACCCACAGGTCCCCCACACCGGACGGTCCCTGTAGGAGCGGGTTTACCCGCGAAAGGTCAAAGCCTGAAAAAGTAGTAGCCTCAGGAGCCCACCGATGTTCAAGACCATCGAAGCCCACATACGCCCGCAGGTcg      >  7:228931/1‑149 (MQ=255)
                                                                                                                                           tctTCGCGGATAAACCCACAGGTCCCCCACACCGTACGGTCCCTGTAGGAGCGGGTTTACccgcgaagaggccggccctggtaattcattgctgtggcaagataccccgggcccagggccggta                              >  2:154649‑M2/1‑60 (MQ=255)
                                                                                                                                           tctTCGCGGATAAACCCACAGGTCCCCCACACCGTACGGTCCCTGTAGGAGCGGGTTTACccgcgaagaggccggccctggtaattcattgctgtggcaagataccccgggcccagggccggta                              <  1:154649‑M2/124‑65 (MQ=255)
                                                                                                                                             ttCGCGGgtaaacccgctcctacagggaccgtacggtgtgggggacctgtgggtttatccgcgaagaggccggccctggtaattcattgctgtggcaagataccccgggcccagggccggtagcgcaaggcaaacactgcctcggcatg    >  7:47715‑M1/1‑7 (MQ=255)
                                                                                                                                             ttCGCGGATAAACCCACAGGTCCCCCACACCGTACGGTCCCTGTAGGAGCGGGTTTACCCGCGAAAGGTCCAAGCCTGAAAAAGTAGTAGCCTCAGGAGCCCACCGATGTTCAAGACCATCGAAGCCCACATACGCCAGCAGGTCgcgc   >  3:67149/1‑149 (MQ=255)
                                                                                                                                              tCGCGGgtaaacccgctcctacagggaccgtacggtgtgggggacctgtgggtttatccgcgaagaggccggccctggtaattcattgctgtggcaagataccccgggcccagggccggtagcgcaaggcaaacactgcctcggcat     <  6:217115‑M1/147‑142 (MQ=255)
                                                                                                                                               cgcgGgtaaacccgctcctacagggaccgtacggtgtgggggacctgtgggtttatccgcgaagaggccggccctggtaattcattgctgtggcaagataccccgggcccagggccggtagcgcaaggcaaacactgcctcggcatggc  >  7:267892‑M1/1‑5 (MQ=255)
                                                                                                                                                   |                                                                                                                                                
GCGCCGGAGCAGGCGTTTCGGGCGGAGCCCGCCGAGCCCAGGGTGGGTAGCGGGTGCCATGCCGAGGCAGTGTTTGCCTTGCGCTACCGGCCCTGGGCCCGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGATAAACCCACAGGTCCCCCACACCGTACGGTCCCTGTAGGAGCGGGTTTACCCGCGAAAGGTCCAAGCCTGAAAAAGTAGTAGCCTCAGGAGCCCACCGATGTTCAAGACCATCGAAGCCCACATACGCCAGCAGGTCGCGCC  >  NC_002947/3911408‑3911698

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.