New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3911555	43 (0.730)	4 (0.070)	4/244	NT	8.4%	intergenic (+25/‑100)	PP_3451/PP_3452	hypothetical protein/GGDEF domain‑containing protein
	?	NC_002947	= 3911606	47 (0.840)					intergenic (+76/‑49)	PP_3451/PP_3452	hypothetical protein/GGDEF domain‑containing protein

GCCATGCCGAGGCAGTGTTTGCCTTGCGCTACCGGCCCTGGGCCCGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGATAAACCCACAGGTCCCCCA‑CACCGTACGGTCCCTGTAGGAGCGGGTTTACCCGCGAAAGGTCCAAGCCTGAAAAAGTAGTAGCCTCAGGAGCCCACCGATGTTCAAGACCATCGAAGCCCACATACGCCAGCAGGTCGCGCCCGCCGCCCTGCGCGCCGAGTTCCGCCAGCACGAATTCGAGTCCATGCGCTCG  >  NC_002947/3911463‑3911750                                                                                                                                                 |                                                                                                                                                 gCCATGCCGAGGCAGTGTTTGCCTTGCGCTACCGGCCCTGGGCCCGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGATAAACCCACAGGTCCCCCA‑CACCGTACGGTCCCTGTAGGAGCGGGTTTACccgcg                                                                                                                                             >  7:267892‑M2/1‑144 (MQ=255)   cATGCCGAGGCAGTGTTTGCCTTGCGCTACCGGCCCTGGGCCCGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGATAAACCCACAGGTCCCCCA‑CACCGTACGGTCCCTGTAGGAGCGGGTTTACccgcgaa                                                                                                                                           >  7:47715‑M2/1‑142 (MQ=255)    aTGCCGAGGCAGTGTTTGCCTTGCGCTACCGGCCCTGGGCCCGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGATAAACCCACAGGTCCCCCA‑CACCGTACGGTCCCTGTAGGAGCGGGTTTACccgcga                                                                                                                                            <  6:217115‑M2/147‑7 (MQ=255)    aTGCCGAGGCAGTGTTTGCCTTGCGCTACCGGCCCTGGGCCCGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGATAAACCCACAGGTCCCCCA‑CACCGTACGGTCCCTGTAGGAGCGGGTTTACCCGCGaaa                                                                                                                                          <  3:260051/149‑1 (MQ=255)       ccGAGGCAGTGTTTGCCTTGCGCTACCGGCCCTGGGCCCGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGATAAACCCACAGGTCCCCCA‑CACCGTACGGTCCCTGTAGGAGCGGGTTTACCCGCGAAAGGt                                                                                                                                       <  4:241606/149‑1 (MQ=255)          aGGCAGTGTTTGCCTTGCGCTACCGGCCCTGGGCCCGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGATAAACCCACAGGTCCCCCA‑CACCGTACGGTCCCTGTAGGAGCGGGTTTACCCGCGAAAGGTcc                                                                                                                                     >  7:9013/1‑148 (MQ=255)             cAGTGTTTGCCTTGCGCTACCGGCCCTGGGCCCGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGATAAACCCACAGGTCCCCCA‑CACCGTACGGTCCCTGTAGGAGCGGGTTTACCCGCGAAAGGTCCAAGc                                                                                                                                 >  5:79550/1‑149 (MQ=255)                     gCCTTGCGCTACCGGCCCTGGGCCCGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGATAAACCCACAGGTCCCCCACCACCGTACGGTCCCTGTAGGAGCGGGTTTACCCGCGAAAGGTCCAAGCCTGaaa                                                                                                                           <  1:283188/148‑1 (MQ=255)                      ccTTGCGCTACCGGCCCTGGGCCCGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGATAAACCCACAGGTCCCCCA‑CCCCGTACGGTCCCTGTAGGAGCGGGTTTACCCGCGAAAGGTCCAAGCCTGaaaaa                                                                                                                         <  1:283012/148‑1 (MQ=255)                        ttGCGCTACCGGCCCTGGGCCCGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGATAAACCCACAGGTCCCCCA‑CACCGTACGGTCCCTGTAGGAGCGGGTTTACCCGCGAAAg                                                                                                                                         <  6:76088/130‑1 (MQ=255)                        acccgcTACCCACCCTGGGCTCGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGATAAACCCACAGGTCCCCCA‑CACCGTACGGTCCCTGTAGGAGCGGGTTTACCCGCGAAAGGTCCAAGCCTGAAAAagta                                                                                                                      <  8:124586/146‑1 (MQ=255)                          gcgcTACCGGCCCTGGGCCCGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGTATAAACCCACAGGTCCCCCA‑CACCGTACGGTCCCTGTAGGAGCGGGTTTACCCGCGAAAGGTCCAAGCCTGAAAAagta                                                                                                                      <  4:247069/147‑1 (MQ=255)                          gcgcTACCGGCCCTGGGCCCGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGATAAACCCACAGGTCCCCCA‑CACCGTACGGTCCCTGTAGGAGCGGGTTTACCCGCGAAAGGTCCAAGCCTGAAAAagta                                                                                                                      <  6:79550/147‑1 (MQ=255)                          gcgcTACCGGCCCTGGGCCCGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGATAAACCCACAGGTCCCCCA‑CACCGTACGGTCCCTGTAGGAGCGGGTTTACCCGCGAAAGGTCCAAGCCTGAAAAagta                                                                                                                      <  5:217115/147‑1 (MQ=255)                           cgcTACCGGCCCTGGGCCCGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGATAAACCCACAGGTCCCCCA‑CACCGTACGGTCCCTGTAGGAGCGGGTTTACCCGCGAAAGGTCCAAGCCTGAAAAagtagt                                                                                                                    <  8:9013/148‑1 (MQ=255)                           cgcTACCGGCCCTGGGCCCGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGATAAACCCACAGGTCCCCCA‑CACCGTACGGTCCCTGTAGGAGCGGGTTTACCCGCGAAAGGTCCAAGCCTGAAAAAgtagta                                                                                                                   <  8:66311/149‑1 (MQ=255)                              tACCGGCCCTGGGCCCGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGATAAACCCACAGGTCCCCCA‑CACCGTACGGTCCCTGTAGGAGCGGGTTTACCCGCGAAAGGTCCAAGCCTGAAAAAGTAGTAGcc                                                                                                                >  6:193347/1‑149 (MQ=255)                                cccacccTGGGCTCGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGATAAACCCACAGGTCCCCCA‑CACCGTACGGTCCCTGTAGGAGCGGGTTTACCCGCGAAAGGTCCAAGCCTGAAAAAGTAGTAGCCTc                                                                                                              <  8:187085/145‑1 (MQ=255)                                 cGGCCCTGGGCCCGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGATAAACCCACAGGTCCCCCA‑CACCGTACGGTCCCTGTAGGAGCGGGTTTACCCGCGAAAGGTCCAAGCCTGAAAAAGTAGTAGCCTc                                                                                                              >  3:198851/1‑148 (MQ=255)                                 cGGCCCTGGGCCCGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGATAAACCCACAGGTCCCCCA‑CACCGTACGGTCCCTGTAGGAGCGGGTTTACCCGCGAAAGGTCCAAGCCTGAAAAAGTAGTAGCCTc                                                                                                              <  4:198851/148‑1 (MQ=255)                                            ccGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGATAAACCCACAGGTCCCCCA‑CACCGTACGGTCCCTGTAGGAGCGGGTTTACCCGCGAAAGGTCCAAGCCTGAAAAAGTAGTAGCCTCAGGAGCCCAcc                                                                                                   >  7:179860/1‑148 (MQ=255)                                               gggTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGATAAACCCACAGGTCCCCCA‑CACCGTACGGTCCCTGTAGGAGCGGGTTTACCCGCGAAAGGTCCAAGCCTGAAAAAGTAGTAGCCTCAGGAGCCCACCGATg                                                                                               >  1:137980/1‑149 (MQ=255)                                                        gCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGATAAACCCACAGGTCCCCCA‑CACCGTACGGTCCCTGTAGGAGCGGGTTTACCCGCGAAAGGTCCAAGCCTGAAAAAGTAGTAGCCTCAGGAGCCCACCGATGTTCAAGa                                                                                        <  5:193347/147‑1 (MQ=255)                                                                aaTGAATTACCAGGGCCGGCCTCTTCGCGGATAAACCCACAGGTCCCCCA‑CACCGTACGGTCCCTGTAGGAGCGGGTTTACCCGCGAAAGGTCCAAGCCTGAAAAAGTAGTAGCCTCAGGAGCCCACCGATGTTCAAGACCATCGAAGc                                                                              <  8:179860/149‑1 (MQ=255)                                                                    aaTTACCAGGGCCGGCCTCTTCGCGGATAAACCCACAGGTCCCCCA‑CACCGTACGGTCCCTGTAGGAGCGGGTTTACCCGCGAAAGGTCCAAGCCTGAAAAAGTAGTAGCCTCAGTAGCCCACCGATGTTCAAGACCATCGAAGCCca                                                                           <  2:265041/148‑1 (MQ=255)                                                                    aaTTACCAGGGCCGGCCTCTTCGCGGATAAACCCACAGGTCCCCCA‑CACCGTACGGTCCCTGTAGGAGCGGGTTTACCCGCGAAAGGTCCAAGCCTGAAAAAGTAGTAGCCTCAGGAGCCCACCGATGTTCAAGACCATCGAAGCCca                                                                           <  5:295714/148‑1 (MQ=255)                                                                      ttACCAGGGCCGGCCTCTTCGCGGATAAACCCACAGGTCCCCCA‑CACCGTACGGTCCCTGTAGGAGCGGGTTTACCCGCGAAAGGTCCAAGCCTGAAAAAGTAGTAGCCTCAGGAGCCCACCGATGTTCAAGACCATCGAAGCCcaca                                                                         >  3:24866/1‑148 (MQ=255)                                                                         ccAGGGCCGGCCTCTTCGCGGATAAACCCACAGGTCCCCCA‑CACCGTACGGTCCCTGTAGGAGCGGGTTTACCCGCGAAAGGTCCAAGCCTGAAAAAGTAGTAGCCTCAGGAGCCCACCGATGTTCAAGACCATCGAAGCCCACATACg                                                                     >  7:325047/1‑149 (MQ=255)                                                                         ccAGGGCCGGCCTCTTCGCGGATAAACCCACAGGTCCCCCA‑CACCGTACGGTCCCTGTAGGAGCGGGTTTACCCGCGAAAGGTCCAAGCCTGAAAAAGTAGTAGCCTCAGGAGCCCACCGATGTTCAAGACCATCGAAGCCCACATACg                                                                     >  2:154529/1‑149 (MQ=255)                                                                                    ctctTCGCGGATAAACCCACAGGTCCCCCA‑CACCGGACGGTCCCTGTAGGAGCGGGTTTACCCGCGAAAGGTCAAAGCCTGAAAAAGTAGTAGCCTCAGGAGCCCACCGATGTTCAAGACCATCGAAGCCCACATACGCCCGCAGGTcg                                                          >  7:228931/1‑149 (MQ=255)                                                                                     tctTCGCGGATAAACCCACAGGTCCCCCA‑CACCGTACGGTCCCTGTAGGAGCGGGTTTACccgcgaagaggccggccctggtaattcattgctgtggcaagataccccgggcccagggccggta                                                                                  <  1:154649‑M2/124‑65 (MQ=255)                                                                                     tctTCGCGGATAAACCCACAGGTCCCCCA‑CACCGTACGGTCCCTGTAGGAGCGGGTTTACccgcgaagaggccggccctggtaattcattgctgtggcaagataccccgggcccagggccggta                                                                                  >  2:154649‑M2/1‑60 (MQ=255)                                                                                       ttCGCGGATAAACCCACAGGTCCCCCA‑CACCGTACGGTCCCTGTAGGAGCGGGTTTACCCGCGAAAGGTCCAAGCCTGAAAAAGTAGTAGCCTCAGGAGCCCACCGATGTTCAAGACCATCGAAGCCCACATACGCCAGCAGGTCgcgc                                                       >  3:67149/1‑149 (MQ=255)                                                                                                  aCCCACAGGTCCCCCA‑CACCGTACGGTCCCTGTAGGAGCGGGTTTACccgcgaagaggccggccctggtaattcattgctgtggcaagataccccgggcccagggccggtagcgcaaggcaaacactgcctcggcatggcacccgctac                                            <  2:122071‑M2/149‑103 (MQ=255)                                                                                                    ccACAGGTCCCCCA‑CACCGTACGGTCCCTGTAGGAGCGGGTTTACCCGCGAAAGGTCCAAGCCTGAAAAAGTAGTAGCCTCGGGAGCCCACCGATGTTCAAGACCATCGAAGCCCACATACGCCAGCAGGTCGCGCCCGCCGCCCTgcg                                          >  4:325970/1‑149 (MQ=255)                                                                                                           tCCCCCA‑CACCGTACGGTCCCTGTAGGAGCGGGTTTACCCGCGAAAGGTCCAAGCCTGAAAAAGTAGTAGCCTCAGGAGCCCACCGATGTTCAAGACCATCGAAGCCCACATACGCCAGCAGGTCGCGCCCGCCGCCCTGCGCGCCGAg                                   >  3:35386/1‑149 (MQ=255)                                                                                                             ccccA‑CACCGTACGGTCCCTGTAGGAGCGGGTTTACCCGCGAAAGGTCCAAGCCTGAAAAAGTAGTAGCCTCAGGAGCCCACCGATGTTCAAGACCATCGAAGCCCACATa                                                                       >  6:297981/1‑111 (MQ=255)                                                                                                             ccccA‑CACCGTACGGTCCCTGTAGGAGCGGGTTTACCCGCGAAAGGTCCAAGCCTGAAAAAGTAGTAGCCTCAGGAGCCCACCGATGTTCAAGACCATCGAAGCCCACATa                                                                       <  5:297981/111‑1 (MQ=255)                                                                                                                 a‑cacCGTACGGTCCCTGTAGGAGCGGGTTTACCCGCGAAAGGTCCAAGCCTGAAAAAGTAGTAGCCTCAGGAGCCCACCGATGTTCAAGACCATCGAAGCCCACATACGCCAGCAGGTCGCGCCCGCCGCCCTGCGCGCCGAGTTCCGc                             <  2:137980/149‑1 (MQ=255)                                                                                                                 a‑cacCGTACGGTCCCTGTAGGAGCGGGTTTACCCGCGAAAGGTCCAAGCCTGAAAAAGTAGTAGCCTCAGGAGCCCACCGATGTTCAAGACCATCGAAGCCCACATACGCCAGCAGGTCGCGCCCGCCGCCCTGCGCGCCGAGTTCCGc                             >  8:350412/1‑149 (MQ=255)                                                                                                                      cGTACGGTCCCTGTAGGAGCGGGTTTACCCGCGAAAGGTCCAAGCCTGAAAAAGTAGTAGCCTCAGGAGCCCACCGATGTTCAAGACCATCGAAGCCCACATACGCCAGCAGGTCGCGCCCGCCGCCCTGCGCGCCGAGTTCCGCCAGc                         <  8:325047/149‑1 (MQ=255)                                                                                                                      cGTACGGTCCCTGTAGGAGCGGGTTTACCCGCGAAAGGTCCAAGCCTGAAAAAGTAGTAGCCTCAGGAGCCCACCGATGTTCAAGACCATCGAAGCCAACATACGCCAGCAGGTCGCGCCCGCCGCCCTGCGCGCCGAGTTCCGCCAg                          >  1:303321/1‑148 (MQ=255)                                                                                                                        tACGGTCCCTGTAGGAGCGGGTTTACCCGCGAAAGGTCCAAGCCTGAAAAAGTAGTAGCCTCAGGAGCCCACCGATGTTCAAGACCATCGAAGCCCACATACGCCAGCAGGTCGCGCCCGCCGCCCTgcgcgc                                       <  5:186021/133‑1 (MQ=255)                                                                                                                        tACGGTCCCTGTAGGAGCGGGTTTACCCGCGAAAGGTCCAAGCCTGAAAAAGTAGTAGCCTCAGGAGCCCACCGAGGTTCAAGACCATCGAAGCCCACATACGCCAGCAGGTCGCGCCCGCCGCCCTgcgcgc                                       >  6:186021/1‑133 (MQ=255)                                                                                                                            gTCCCTGTAGGAGCGGGTTTACCCGCGAAAGGTCCAAGCCTGAAAAAGTAGTAGCCTCAGGAGCCCACCGATGTTCAAGACCATCGAAGCCCACATACGCCAGCAGGTCGCGCCCGCCGCCCTGCGCGCCGAGTTCCGCCAGCACGAAt                   >  5:47441/1‑149 (MQ=255)                                                                                                                             tCCCTGTAGGAGCGGGTTTACCCGCGAAAGGTCCAAGCCTGAAAAAGTAGTAGCCTCAGGAGCCCACCGATGTTCAAGACCATCGAAGCCCACATACGCCAGCAGGTCGCGCCCGCCGCCCTGCGCGCCGAGTTcc                               <  3:118810/136‑1 (MQ=255)                                                                                                                             tCCCTGTAGGAGCGGGTTTACCCGCGAAAGGTCCAAGCCTGAAAAAGTAGTAGCCTCAGGAGCCCACCGATGTTCAAGACCATCGAAGCCCACATACGCCAGCAGGTCGCGCCCGCCGCCCTGCGCGCCGAGTTcc                               >  4:118810/1‑136 (MQ=255)                                                                                                                             tCCCTGTAGGAGCGGGTTTACCCGCGAAAGGTCCAAGCCTGAAAAAGTAGTAGCCTCAGGAGCCCACCGATGTTCAAGACCATCGAAGCCCACATACGCCAGCAGGTCGCGCCCGCCGCCCTGCGCGCCGAGTTCCGCCAGCACGAAtt                  <  5:140777/149‑1 (MQ=255)                                                                                                                              cccTGTAGGAGCGGGTTTACCCGCGAAAGGTCCAAGCCTGAAAAAGTAGTAGCCTCAGGAGCCCACCGATGTTCAAGACCATCGAAGCCCACATACGCCAGCAGGTCGCGCCCGCCGCCCTGCGCGCCGAGTTCCGCCAGCACGAATTc                 <  4:24866/149‑1 (MQ=255)                                                                                                                                  gTAGGAGCGGGTTTACCCGCGAAAGGTCGAAGCCTGAAAAAGTAGTAGCCTCAGGAGCCCACCGATGTTCAAGACCATCGAAGCCCACATACGCCAGCAGGTCGCGCCCGCCGCCCTGCGCGCCGAGTTCCGCCAGCACGAATTc                 <  6:265504/145‑1 (MQ=255)                                                                                                                                  gTAGGAGCGGGTTTACCCGCGAAAGGTCCAAGCCTGAAAAAGTAGTAGCCTCAGGAGCCCACCGATGTTCAAGACCATCGAAGCCCACATACGCCAGCAGGTCGCGCCCGCCGCGCTGCGCGCCGAGTTCCGCCAGCACGAATTc                 >  5:265504/1‑145 (MQ=255)                                                                                                                                   tAGGAGCGGGTTTACccgcgaagaggccggccctggtaattcattgctgtggcaagataccccgggcccagggccggtagcgcaaggcaaacactgcctcggcatggcacccgctacccaccctgggctcggcgggctccgcccgaaac            >  1:122071‑M2/1‑15 (MQ=255)                                                                                                                                      gAGCGGGTTTACCCGCGAAAGGTCCAAGCCTGAAAAAGTAGTAGCCTCAGGAGCCCACCGATGTTCAAGACCATCGAAGCCCACATACGCCAGCAGGTCGCGCCCGCCGCCCTGCGCGCCGAGTTCCGCCAGCACGAATTCGa               <  7:74131/143‑1 (MQ=255)                                                                                                                                      gAGCGGGTTTACCCGCGAAAGGTCCAAGCCTGAAAAAGTAGTAGCCTCAGGAGCCCACCGATGTTCAAGACCATCGAAGCCCACATACGCCAGCAGGTCGCGCCCGCCGCCCTGCGCGCCGAGTTCCGCCAGCACGAATTCGa               >  8:74131/1‑143 (MQ=255)                                                                                                                                      gAGCGGGTTTACCCGCGAAAGGTCCAAGCCTGAAAAAGTAGTAGCCTCAGGAGCCCACCGATGTTCAAGACCATCGAAGCCCACATACGCCAGCAGGTCGCGCCCGCCGCCCTGCGCGCCGAGTTCCGCCAGCACGAATTCGAGTCCAt         >  1:294049/1‑149 (MQ=255)                                                                                                                                      gAGCGGGTTTACCCGCGAAAGGTCCAAGCCTGAAAAAGTAGTAGCCTCAGGAGCCCACCGATGTTCAAGACCATCGAAGCCCACATACGCCAGCAGGTCGCGCCCGCCGCCCTGCGCGCCGAGTTCCGCCAGCACGAATTCGAGTCCAt         <  2:77404/149‑1 (MQ=255)                                                                                                                                         cGGGTTTACCCGCGAAAGGTCCAAGCCTGAAAAAGTAGTAGCCTCAGGAGCCCACCGATGTTCAAGACCATCGAAGCCCACATACGCCAGCAGGTCGCGCCCGCCGCCCTGCGCGCCGAGTTCCGCCAGCACGAATTCGAGTCCATgc       <  8:228931/148‑1 (MQ=255)                                                                                                                                             tttACCCGCGAAAGGTCCAAGCCTGAAAAAGTAGTAGCCTCAGGAGCCCACCGATGTTCAAGACCATCGAAGCCCACATACGCCAGCAGGTCGCGCCCGCCGCCCTGCGCGCCGAGTTCCGCCAGCACGAATTCGAGTCCATGCGCTCg  <  2:294049/149‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                                 GCCATGCCGAGGCAGTGTTTGCCTTGCGCTACCGGCCCTGGGCCCGGGGTATCTTGCCACAGCAATGAATTACCAGGGCCGGCCTCTTCGCGGATAAACCCACAGGTCCCCCA‑CACCGTACGGTCCCTGTAGGAGCGGGTTTACCCGCGAAAGGTCCAAGCCTGAAAAAGTAGTAGCCTCAGGAGCCCACCGATGTTCAAGACCATCGAAGCCCACATACGCCAGCAGGTCGCGCCCGCCGCCCTGCGCGCCGAGTTCCGCCAGCACGAATTCGAGTCCATGCGCTCG  >  NC_002947/3911463‑3911750

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.