New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5447383	37 (0.630)	4 (0.070)	3/240	NT	9.8%	coding (888/1284 nt)	hemL	glutamate‑1‑semialdehyde 2,1‑aminomutase
	?	NC_002947	= 5447413	39 (0.710)					coding (918/1284 nt)	hemL	glutamate‑1‑semialdehyde 2,1‑aminomutase

GCGGCGCCCAGGGCCATTACGGCATCAAGCCGGACCTGTCGACCTTCGGCAAGATCGTCGGTGGCGGCATGCCGGTCGGCTGTTTCGGCGGCAAGCGTGAAATCATGGGCTGCATCGCCCCGCTCGGCCCGGTCTACCAGGCCGGCACCCTGTCGGGCAACCCGCTGGCCATGGCCGCCGGCCTGACCACCCTCAAGCTGATCAGCCGCCCAGGCTTCCACGCCGAGCTGACCGACTACACCAGCCGCATGCTTGACGGCCTGCAGCAACGCGCCGATGCCGCTGGCGTGC  >  NC_002947/5447238‑5447528                                                                                                                                                  |                                                                                                                                                  gcgccgCCCAGGGCCATTACCGCCTCAAGCCGGACCTGTCGCCCAGCCGCAAGATCGTCGGTGGCGGCATGCCGGGCGGCTGTTTCGGCGGCAAGCGTGAAATCATGGGCTGCATCGCCCCGCTCGGCCCGGTCTACCAGGCCGGCAcc                                                                                                                                                <  8:250936/149‑1 (MQ=255)        ccAGGGCCATTACGGCATCAAGCCGGACCTGTCGACCTTCGGCAAGATCGTCGGTGGCGGCATGCCGGTCGGCTGTTTCGGCGGCAAGCGTGAAATCATGGGCTGCATCGCCCCGCTCGGCCCGGTCTACCAGGCCGGCACCCTGTCgg                                                                                                                                         <  1:180407/149‑1 (MQ=255)        ccAGGGCCATTACGGCATCAAGCCGGACCTGTCGACCTTCGGCAAGATCGTCGGTGGCGGCATGCCGGTCGGCTGTTTCGGCGGCAAGCGTGAAATCATGGGCTGCATCGCCCCGCTCGGCCCGGTCTACCAGGCCGGCACCCTGTCgg                                                                                                                                         <  2:192431/149‑1 (MQ=255)        ccAGGGCCATTACGGCATCAAGCCGGACCTGTCGACCTTCGGCAAGATCGTCGGTGGCGGCATGCCGGTCGGCTGTTTCGGCGGCAAGCGTGAAATCATGGGCTGCATCGCCCCGCTCGGCCCGGTCTACCAGGCCGGCACCCTGTCgg                                                                                                                                         <  3:123913/149‑1 (MQ=255)        ccAGGGCCATTACGGCATCAAGCCGGACCTGTCGACCTTCGGCAAGATCGTCGGTGGCGGCATGCCGGTCGGCTGTTTCGGCGGCAAGCGTGAAATCATGGGCTGCATCGCCCCGCTCGGCCCGGTCTACCAGGCCGGCACCCTGTCg                                                                                                                                          <  5:130621/148‑1 (MQ=255)        ccAGGGCCATTACGGCATCAAGCCGGACCTGTCGACCTTCGGCAAGATCGTCGGTGGCGGCATGCCGGTCGGCTGTTTCGGCGGCAAGCGTGAAATCATGGGCTGCATCGCCCCGCTCGGCCCGGTCTACCAGGCCGGCACCCTGTCg                                                                                                                                          >  6:130621/1‑148 (MQ=255)                 ttACGGCATCAAGCCGGACCTGTCGACCTTCGGCAAGATCGTCGGTGGCGGCATGCCGGTCGGCTGTTTCGGCGGCAAGCGTGAAATCATGGGCTGCATCGCCCCGCTCGGCCCGGTCTACCAGGCCGGCACCCTGTAGGGCAACCCGc                                                                                                                                >  4:322051/1‑149 (MQ=255)                        aTCAAGCCGGACCTGTCGACCTTCGGCAAGATCGTCGGTGGCGGCATGCCGGTCGGCTGTTTCGGCGGCAAGCGTGAAATCATGGGCTGCATCGCCCCGCTCGGCCCGGTCTACCAGGCCGGCACCCTGTCGGGCAACCCGCTGGCCAt                                                                                                                         >  5:197320/1‑149 (MQ=255)                         tCAAGCCGGACCTGTCGACCTTCGGCAAGATCGTCGGTGGCGGCATGCCGGTCGGCTGTTTCGGCGGCAAGCGTGAAATCATGGGCTGCATCGCCCCGCTCGGCCCGGTCTACCAGGCCGGCACCCTGTCGGGCAACCCGCTGGCCATg                                                                                                                        >  5:39638/1‑149 (MQ=255)                                   ccTGTCGACCTTCGGCAAGATCGTCGGTGGCGGCATGCCGGTCGGCTGTTTCGGCGGCAAGCGTGAAATCATGGGCTGCATCGCCCCGCTCGGCCCGGTCTACCAGGCCGGCggccatggccagcgggttgcccgacagggtgccggcc                                                                                                              <  4:287416‑M1/149‑38 (MQ=255)                                    cTGTCGACCTTCGGCAAGATCGTCGGTGGCGGCATGCCGGTCGGCTGTTTCGGCGGCAAGCGTGAAATCATGGGCTGCATCGCCCCGCTCGGCCCGGTCTACCAGGCCGGCggccatggccagcgggttgcccgacagggtgccggcct                                                                                                             <  7:80577‑M1/149‑39 (MQ=255)                                      gTCGACCTTCGGCAAGATCGTCGGTGGCGGCATGCCGGTCGGCTGTTTCGGCGGCAAGCGTGAAATCATGGGCTGCATCGCCCCGCTCGGCCCGGTCTACCAGGCCGGCACCCTGTCGGGCAACCCGCTGGCCATGGCCGCCGGCCTGa                                                                                                           >  1:218000/1‑149 (MQ=255)                                      gTCGACCTTCGGCAAGATCGTCGGTGGCGGCATGCCGGTCGGCTGTTTCGGCGGCAAGCGTGAAATCATGGGCTGCATCGCCCCGCTCGGCCCGGTCTACCAGGCCGGCACCCTGTCGGGCAACCCGCTGGCCATGGCCGCCGGCCTGa                                                                                                           >  6:219466/1‑149 (MQ=255)                                           ccTTCGGCAAGATCGTCGGTGGCGGCATGCCGGTCGGCTGTTTCGGCGGCAAGCGTGAAATCATGGGCTGCATCGCCCCGCTCGGCCCGGTCTACCAGGCCGGCACCCTGTCGGGCAACCCGCTGGCCATGGCCGCCGGCCTGaccacc                                                                                                      <  6:39638/149‑1 (MQ=255)                                                  cAAGATCGTCGGTGGCGGCATGCCGGTCGGCTGTTTCGGCGGCAAGCGTGAAATCATGGGCTGCATCGCCCCGCTCGGCCCGGTCTACCAGGCCGGCACCCTGTCGGGCAACCCGCTGGCCATGGCCgccggcc                                                                                                              >  2:36030‑M2/1‑127 (MQ=255)                                                  cAAGATCGTCGGTGGCGGCATGCCGGTCGGCTGTTTCGGCGGCAAGCGTGAAATCATGGGCTGCATCGCCCCGCTCGGCCCGGTCTACCAGGCCGGCACCCTGTCGGGCAACCCGCTGGCCATGGCCgccggcc                                                                                                              <  1:36030‑M2/134‑8 (MQ=255)                                                  cAAGATCGTCGGTGGCGGCATGCCGGTCGGCTGTTTCGGCGGCAAGCGTGAAATCATGGGCTGCATCGCCCCGCTCGGCCCGGTCTACCAGGCCGGCACCCTGTCGGGCAACCCGCTGGCCATGGCCGCCGGCCTGACCACCCTCAAGc                                                                                               >  5:38301/1‑149 (MQ=255)                                                       tcgtcgGTGGCGGCATGCCGGTCGGCTGTTTCGGCGGCAAGCGTGAAATCATGGGCTGCATCGCCCCGCTCGGCCCGGTCTACCAGGCCGGCACCCTGTCGGGCAACCCGCTGGCCATGGCCGCCGGCCTGCCCACCCTCAAGCTGAt                                                                                           >  6:276581/1‑148 (MQ=255)                                                                  ggcATGCCGGTCGGCTGTTTCGGCGGCAAGCGTGAAATCATGGGCTGCATCGCCCCGCTCGGCCCGGTCTACCAGGCCGGCACCCTGTCGGGCAACCCGCTGGCCATGGCCGCCGGCCTGACCACCCTCAAGCTGATCAGCCGCCCAgg                                                                               >  6:79716/1‑149 (MQ=255)                                                                      tGCCGGTCGGCTGTTTCGGCGGCAAGCGTGAAATCATGGGCTGCATCGCCCCGCTCGGCCCGGTCTACCAGGCCGGCACCCTGTCGGGGAACCCGCTGGCCATGGCCGCCGGCCTGACCACCCTCAAGCTGATCAGCCGCCCAGGCTTc                                                                           <  3:70014/149‑1 (MQ=255)                                                                         cGGTCGGCTGTTTCGGCGGCAAGCGTGAAATCATGGGCTGCATCGCCCCGCTCGGCCCGGTCTACCAGGCCGGCggccatggccagcgggttgcccgacagggtgccggcc                                                                                                              >  7:207140‑M1/1‑74 (MQ=255)                                                                         cGGTCGGCTGTTTCGGCGGCAAGCGTGAAATCATGGGCTGCATCGCCCCGCTCGGCCCGGTCTACCAGGCCGGCggccatggccagcgggttgcccgacagggtgccggcc                                                                                                              <  8:207140‑M1/111‑38 (MQ=255)                                                                         cGGTCGGCTGTTTCGGCGGCAAGCGTGAAATCATGGGCTGCATCGCCCCGCTCGGCCCGGTCTACCAGGCCGGCACCCTGTCGGGCAACCCGCTGGCCATGGCCGCCGGCCTGACCACCCTCAAGCTGATCAGCCGCCCAGGCTTCCAc                                                                        >  8:17933/1‑149 (MQ=255)                                                                            tCGGCTGTTTCGGCGGCAAGCGTGAAATCATGGGCTGCATCGCCCCGCTCGGCCCGGTCTACCAGGCCGGCACCCTGTCGGGCAACCCGCTGGCCATGGCCGCCGGCCTGACCACCCTCAAGCTGATCAGCCGCCCAGGCTTCCACGcc                                                                     >  6:178315/1‑149 (MQ=255)                                                                                      cggcggCAAGCGTGAAATCATGGGCTGCATCGCCCCGCTCGGCCCGGTCTACCAGGCCGGCACCCTGTCGGGCAACCCGCTGGCCATGGCCGCCGGCCTGACCACCCTCAAGCTGATCAGCCGCCCAGGCTTCCACGCCGAGCTGAcc                                                            >  8:157351/1‑148 (MQ=255)                                                                                      cggcggCAAGCGTGAAATCATGGGCTGCATCGCCCCGCTCGGCCCGGTCTACCAGGCCGGCACCCTGTCGGGCAACCAGCTGGCCATGGCCGCCGGCCTGCCCACCCTCAAGCTGCTCAGCCGCCCAGGCTTCCACGCCGCGCTGccc                                                            >  8:39074/1‑148 (MQ=255)                                                                                       ggcggcAAGCGTGAAATCATGGGCTGCATCGCCCCGCTCGGCCCGGTCTACCAGGCCGGCACCCTGTCGGGCAACCCGCTGGCCATGGCCGCCGGCCTGACCACCCTCAAGCTGATCAGCCGCCCAGGCTTCCACGCCGAGCTGACCGa                                                          >  7:82502/1‑149 (MQ=255)                                                                                          ggcAAGCGTGAAATCATGGGCTGCATCGCCACGCTCGGCCCGGTCTACCAGGCCGGCACCCTGTCGGGCAACCCGCTGGCCATGGCCGCCGGCCTGACCACCCTCAAGCTGATCAGCCGCCCAGGCTTCCACGCCGAGCTGACCGACTa                                                       <  6:197320/149‑1 (MQ=255)                                                                                                 gTGAAATCATGGGCTGCATCGCCCCGCTCGGCCCGGTCTACCAGGCCGGCACCCTGTCGGGCAACCCGCTGGCCATGGCCGCCGGCCTGACCACCCTCAAGCTGATCAGCCGCCCAGGCTTCCACGCCGAGCTGACCGACTACACCAGc                                                >  4:192931/1‑149 (MQ=255)                                                                                                      aTCATGGGCTGCATCGCCCCGCTCGGCCCGGTCTACCAGGCCGGCACCCTGTCGGGCAACCCGCTGGCCATGGCCGCCGGCCTGACCACCCTCAAGCTGATCAGCCGCCCAGGCTTCCACGCCGAGCTGACCGACTACACCAGCCGCAt                                           >  5:128839/1‑149 (MQ=255)                                                                                                       tCATGGGCTGCATCGCCCCGCTCGGCCCGGTCTACCAGGCCGGCACCCTGTCGGGCAACCCGCTGGCCATGGCCGCCGGCCTGACCACCCTCAAGCTGATCAGCCGCCCAGGCTTCCACGCCGAGCTGACCGACTACACCAGCCGCATg                                          >  7:135757/1‑149 (MQ=255)                                                                                                         aTGGGCTGCATCGCCCCGCTCGGCCCGGTCTACCAGGCCGGCACCCTGTCGGGCAACCCGCTGGCCATGGCCGCCGGCCTGACCACCCTCAAGCTGATCAGCCGCCCAGGCTTCCACGCCGAGCTGACCGACTACACCAGCCGCATGCt                                        >  2:111824/1‑149 (MQ=255)                                                                                                          tGGGCTGCATCGCCCCGCTCGGCCCGGTCTACCAGGCCGGCACCCTGTCGGGCAACCCGCTGGCCATGGCCGCCGGCCTGACCACCCTCAAGCTGATCAGCCGCCCAGGCTTCCACGCCGAGCTGACCGACTACACCAGCCGCATGCtt                                       <  5:79716/149‑1 (MQ=255)                                                                                                              cTGCATCGCCCCGCTCGGCCCGGTCTACCAGGCCGGCACCCTGTCGGGCAACCCGCTGGCCATGGCCGCCGGCCTGACCACCCTCAAGCTGATCAGCCGCCCAGGCTTCCACGCCGAGCTGACCGACTACACCAGCCGCATGCTTGACg                                   <  4:202743/149‑1 (MQ=255)                                                                                                                 cATCGCCCCGCTCGGCCCGGTCTACCAGGCCGGCACCCTGTCGGGCAACCCGCTGGCCATGGCCGCCGGCCTGACCACCCTCAAGCTGATCAGCCGCCCAGGCTTCCACGCCGAGCTGACCGACTACACCAGCCGCATGCTTGACGGcc                                >  1:203799/1‑149 (MQ=255)                                                                                                                  aTCGCCCCGCTCGGCCCGGTCTACCAGGCCGGCACCCTGTCGGGCAACCCGCTg                                                                                                                              <  8:251153/54‑1 (MQ=255)                                                                                                                  aTCGCCCCGCTCGGCCCGGTCTACCAGGCCGGCACCCTGTCGGGCAACCCGCTg                                                                                                                              >  7:251153/1‑54 (MQ=255)                                                                                                                   tCGCCCCGCTCGGCCCGGTCTACCAGGCCGGCACCCTGTCGGGCAACCCGCTGGCCATGGCCGCCGGCCTGACCACCCTCAAGCTGATCAGCCGCCCAGGCTTCCACGCCGAGCTGACCGACTACACCAGCCGCATGCTTGACGGCCTg                              <  5:178315/149‑1 (MQ=255)                                                                                                                     gCCCCGCTCGGCCCGGTCTACCAGGCCGGCACCCTGTCGGGCAACCCGCTGGCCATGGCCGCCGGCCTGACCACCCTCAAGCTGATCAGCCGCCCAGGCTTCCACGCCGAGCTGACCGACTACACCAGCCGCATGCTTGACGGCCTgca                            <  7:17933/149‑1 (MQ=255)                                                                                                                      ccccGCTCGGCCCGGTCTACCAGGCCGGCACCCTGTCGGGCAACCCGCTGGCCATGGCCGCCGGCCTGACCACCCTCAAGCTGATCAGCCGCCCAGGCTTCCACGCCGAGCTGACCGACTACACCAGCCGCATGCTTGACGGCCTgcag                           <  2:218000/149‑1 (MQ=255)                                                                                                                                  cGGTCTACCAGGCCGGCACCCTGTCGGGCAACCCGCTGGCCATGGCCGCCGGCCTGACCACCCTCAAGCTGATCAGCCGCCCAGGCTTCCACGCCGAGCTGACCGACTACACCAGCCGCATGCTTGACGGCCTgcag                           >  2:102336/1‑137 (MQ=255)                                                                                                                                  cGGTCTACCAGGCCGGCACCCTGTCGGGCAACCCGCTGGCCATGGCCGCCGGCCTGACCACCCTCAAGCTGATCAGCCGCCCAGGCTTCCACGCCGAGCTGACCGACTACACCAGCCGCATGCTTGACGGCCTgcag                           <  1:102336/137‑1 (MQ=255)                                                                                                                                  cGGTCTACCAGGCCGGCACCCTGTCGGGCAACCCGCTGGCCATGGCCGCCGGCCTGACCACCCTCAAGCTGATCAGCCGCCCAGGCTTCCACGCCGAGCTGACCGACTACACCAGCCGCATGCTTGACGGCCTGCAGCAACGCGCCGAt               <  5:219466/149‑1 (MQ=255)                                                                                                                                           aGGCCGGCACCCTGTCGGGCAACCCGCTGGCCATGGCCgccggcctggtagaccgggccgagcggggcgatgcagcccatgatttcacgcttgccgccgaaacagccgaccggcatgccgccaccgacgatcttgccgaaggtcgacag      <  7:80577‑M2/149‑112 (MQ=255)                                                                                                                                            ggCCGGCggccatggccagcgggttgcccgacagggtgccggcctggtagaccgggccgagcggggcgatgcagcccatgatttcacgcttgccgccgaaacagccgaccggcatgccgccaccgacgatcttg                    >  2:36030‑M1/1‑7 (MQ=255)                                                                                                                                            ggCCGGCggccatggccagcgggttgcccgacagggtgccggcctggtagaccgggccgagcggggcgatgcagcccatgatttcacgcttgccgccgaaacagccgaccggcatgccgccaccgacgatcttg                    <  1:36030‑M1/134‑128 (MQ=255)                                                                                                                                            ggCCGGCACCCTGTCGGGCAACCCGCTGGCCATGGCCgccggcctggtagaccgggccgagcggggcgatgcagcccatgatttcacgcttgccgccgaaacagccgaccggcatgccgccaccgacgatcttgccgaaggtcgacagg     <  4:287416‑M2/149‑113 (MQ=255)                                                                                                                                            ggCCGGCACCCTGTCGGGCAACCCGCTGGCCATGGCCgccggcctggtagaccgggccgagcggggcgatgcagcccatgatttcacgcttgccgccgaaacagccgaccg                                           >  7:207140‑M2/1‑37 (MQ=255)                                                                                                                                            ggCCGGCACCCTGTCGGGCAACCCGCTGGCCATGGCCgccggcctggtagaccgggccgagcggggcgatgcagcccatgatttcacgcttgccgccgaaacagccgaccg                                           <  8:207140‑M2/111‑75 (MQ=255)                                                                                                                                            ggCCGGCACCCTGTCGGGCAACCCGCTGGCCATGGCCGCCGGCCTGACCACCCTCAAGCTGATCAGCCGCCCAGGCTTCCACGCCGAGCTGACCGACTACACCAGCCGCATGCTTGACGGCCTGCAGCAACGCGCCGATGCCGCTGGCg     >  1:125427/1‑149 (MQ=255)                                                                                                                                               cGGCACCCTGTCGGGCAACCCGCTGGCCATGGCCGCCGGCCTGACCACCCTCAAGCTGATCAGCCGCCCAGGCTTCCACGCCGAGCTGACCGACTACACCAGCCGCATGCTTGACGGCCTGCAGCAACGCGCCGATGCCGCTGGCGTGc  >  8:348157/1‑149 (MQ=255)                                                                                                                                                ggCACCCTGTCGGGCAACCCGCTGGCCATGGCCGCCGGCCTGACCACCCTCAAGCTGATCAGCCGCCCAGGCTTCCACGCCGAGCTGACCGACTACACCAGCCGCATGCTTGACGGCCTGCAGCAACGCGCCGATGCCGCTGGCGTGc  >  5:6891/1‑148 (MQ=255)                                                                                                                                                ggCACCCTGTCGGGCAACCCGCTGGCCATGGCCGCCGGCCTGACCACCCTCAAGCTGATCAGCCGCCCAGGCTTCCACGCCGAGCTGACCGACTACACCAGCCGCATGCTTGACGGCCTGCAGCAACGCGCCGATGCCGCTGGCGTGc  >  1:133495/1‑148 (MQ=255)                                                                                                                                                  |                                                                                                                                                  GCGGCGCCCAGGGCCATTACGGCATCAAGCCGGACCTGTCGACCTTCGGCAAGATCGTCGGTGGCGGCATGCCGGTCGGCTGTTTCGGCGGCAAGCGTGAAATCATGGGCTGCATCGCCCCGCTCGGCCCGGTCTACCAGGCCGGCACCCTGTCGGGCAACCCGCTGGCCATGGCCGCCGGCCTGACCACCCTCAAGCTGATCAGCCGCCCAGGCTTCCACGCCGAGCTGACCGACTACACCAGCCGCATGCTTGACGGCCTGCAGCAACGCGCCGATGCCGCTGGCGTGC  >  NC_002947/5447238‑5447528

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.