New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5758533	38 (0.650)	5 (0.090)	4/252	NT	11.3%	coding (399/438 nt)	PP_5051	hypothetical protein
	?	NC_002947	= 5758566	41 (0.710)					coding (366/438 nt)	PP_5051	hypothetical protein

GGGGACCTCGGTACAGGCAGGCCGGGTATCCCCCCTTTATACGCAGTACCCCTTTTGGGGACCCTGGTACAGGCAGGCCGGGATATCCCCTCTTTTATTCGTGCAGTTTCACTTGCACCCGCCAGCGCCCAGCGTCCTCTGCACCGGCCCATTCGCCGTG‑CAGGGGGCGCGCGGCCACCACCGTCAGCAACAAACCTTCCTTGCTGTGCTGTACCCGCCAGCTCACCGGCTTGCCCTGCAGGCTGAGCTGCCCTTGCTGAGCCTTGCCCTGGGCCTGAAACA  >  NC_002947/5758400‑5758681                                                                                                                                      |                                                                                                                                                      ggggACCTCGGAACAGGCAGGCCGGGAATCCCCCCTTTATACGCAGTACCCCTTTTGGGGACCCCGGTACAGGCAGGCCGGGATATCCCCTCTTTTATTCGTGCAGTTTCACTTGCACCCGCCAGCGCCCAGCGTCCTCTGCACCGGc                                                                                                                                         <  5:200540/148‑1 (MQ=255)          ggTACAGGCAGGCCGGGTATCCCCCCTTTATACGCAGTACCCCTTTTGGGGACCCTGGTACAGGCAGGCCGGGATATCCCCTCTTTTATTCGTGCAGTTTCACTTGCACCCGCCAGCGCCCAGCGTCCTCTGCACCGGCCCATTCGCCg                                                                                                                               >  5:343693/1‑149 (MQ=255)             aCAGGCAGGCCGGGTATCCCCCCTTTATACGCAGTACCCCTATTGGGGACCCTGGTACAGCCAGGCCGGGATATCCCCTCTTTTATTCGTGCAGTTTCACTTGCACCCGCAAGCGCCCAGCGTCCACTGCACCGGCCCATTCGCCGTG‑c                                                                                                                           >  6:310437/1‑149 (MQ=255)              caggaaggCCGGGTATCCCCCCTTTATACGCAGTACCCCTTTTGGGGACCCTGGTACAGGCAGGCCGGGATATCCCCTCTTTTATTCGTGCAGTTTCACTTGCACCCGCCAGCGCCCAGCGTCCTCTGCACCGGCCCATTCGCCGTG‑c                                                                                                                           <  5:210052/148‑1 (MQ=255)                 gcaggcCGGGTATCCCCCCTTTATACGCAGTACCCCTTTTGGGGACCCTGGTACAGGCAGGCCGGGATATCCCCTCTTTTATTCGTGCAGTTTCACTTGCACCCGCCAGCGCCCAGCGTCCTCTGCACCGGCCCATTCGCCGTG‑CAggg                                                                                                                       >  8:6253/1‑149 (MQ=255)                 gcaggcCGGGTATCCCCCCTTTATACGCAGTACCCCTTTTGGGGACCCTGGTACAGGCAGGCCGGGATATCCCCTCTTTTATTCGTGCAGTTTCACTTGCACCCGCCAGCGCCCAGCGTCCTCTGCACCGGCCCATTCGCCGTG‑CAggg                                                                                                                       <  3:205583/149‑1 (MQ=255)                   aggcCGGGTATCCCCCCTTTATACGCAGTACCCCTTTTGGGGACCCTGGTACAGGCAGGCCGGGATATCCCCTCTTTTATTCGTGCAGTTTCACTTGCACCCGCCAGCGCCCAGCGccccctgcacggcgaatgggccggtgcagagga                                                                                                                      <  3:282124‑M1/149‑34 (MQ=255)                   aggcCGGGTATCCCCCCTTTATACGCAGTACCCCTTTTGGGGACCCTGGTACAGGCAGGCCGGGATATCCCCTCTTTTATTCGTGCAGTTTCACTTGCACCCGCCAGCGCCCAGCGTCCTCTGCACCGGCCCATTCGCCGTG‑CAggggg                                                                                                                     >  6:344099/1‑149 (MQ=255)                         ggTATCCCCCCTTTATACGCAGTACCCCTTTTGGGGACCCTGGTACAGGCAGGCCGGGATATCCCCTCTTTTATTCGAGCAGTTTCACTTGCACCCGCCAGCGCCCAGCGTCCTCTGCACCGGCCCATTCGCCGTG‑CAGGGGGcgcgcg                                                                                                               <  3:4125/149‑1 (MQ=255)                            actcccccATTCTACGCAGCAGCACTTTCGGGGTCCCTGGTACAGGCAGGCCGGGATATCCCCTCTTTTATTCGTGCAGTTTCACTTGCACCCGCCAGCGCCCAGCGTCCTCTGCACCGGCCCATTCGCCGTG‑CAGGGGGCGCGCGGcc                                                                                                            <  8:65531/146‑1 (MQ=38)                                ccccTTTATACGCAGTACCCCTTTTGGGGACCCTGGTACAGGCAGGCCGGGATATCCCCTCTTTTATTCGTGCAGTTTCACTTGCACCCGCCAGCGCCCAGCGccccctgcacggcgaatgggccggtgcagaggacgctgg                                                                                                                >  8:221691‑M1/1‑103 (MQ=255)                                ccccTTTATACGCAGTACCCCTTTTGGGGACCCTGGTACAGGCAGGCCGGGATATCCCCTCTTTTATTCGTGCAGTTTCACTTGCACCCGCCAGCGCCCAGCGccccctgcacggcgaatgggccggtgcagaggacgctgg                                                                                                                <  7:221691‑M1/142‑40 (MQ=255)                                        taCGCAGTACCCCTTTTGGGGACCCTGGTACAGGCAGGCCGGGATATCCCCTCTTTTATTCGTGCAGTTTCACTTGCACCCGCCAGCGCCCAGCGTCCTCTGCACCGGCCCATTCGCCGTG‑CAGGGGGCGCGCGGCCACCACCGTCAg                                                                                                 >  7:92674/1‑148 (MQ=255)                                             aggaCCCCTTTTGGGGACCCTGGTACAGGCAGGCCGGGATATCCCCTCTTTTATTCGTGCAGTTTCACTTGCACCCGCCAGCGCCCAGCGTCCTCTGCACCGGCCCATTCGCCGTG‑CAGGGGGCGCGCGGCCACCACCGTCAGcaacaa                                                                                           <  3:23750/146‑1 (MQ=255)                                                  cccTTTTGGGGACCCTGGTACAGGCAGGCCGGGATATCCCCTCTTTTATTCGTGCAGTTTCACTTGCACCCGCCAGCGCCCAGCGTCCTCTGCACCGGCCCATTCGCCGTG‑CAggggg                                                                                                                     <  1:184930/118‑1 (MQ=255)                                                  cccTTTTGGGGACCCTGGTACAGGCAGGCCGGGATATCCCCTCTTTTATTCGTGCAGTTTCACTTGCACCCGCCAGCGCCCAGCGTCCTCTGCACCGGCCCATTCGCCGTG‑CAggggg                                                                                                                     >  2:184930/1‑118 (MQ=255)                                                  cccTTTTGGGGACCCTGGTACAGGCAGGCCGGGATATCCCCTCTTTTATTCGTGCAGTTTCACTTGCACCCGCCAGCGCCCAGCGTCCTCTGCACCGGCCCATTCGCCGTG‑CAGGGGGCGCGCGGCCACCACCGTCAGCAACAAAcctt                                                                                      <  7:6253/149‑1 (MQ=255)                                                    cTTTTGGGGACCCTGGTACAGGCAGGCCGGGATATCCCCTCTTTTATTCGTGCAGTTTCACTTGCACCCGCCAGCGCCCAGCGTCCTCTGCACCGGCCCATTCGCCGTG‑CAGGGGGCGCGCGGCCACCACCGTCAGCAACAAAccttcc                                                                                    <  7:213334/149‑1 (MQ=255)                                                       ttGGGGACCCTGGTACAGGCAGGCCGGGATATCCCCTCTTTTATTCGTGCAGTTTCACTTGCACCCGCCAGCGCCCAGCGTCCTCTGCACCGGCCCATTCGCCGTG‑CAGGGGGCGCGCGGCCACCACCGTCAGCAACAAAccttcctt                                                                                  <  5:40234/148‑1 (MQ=255)                                                        tcggtaCCCTTGTACAGGCAGGCCGGGATATCCCCTCTTTTATTCGTGCAGTTTCACTTGCACCCGCCAGCGCCCAGCGTCCTCTGCACCGGCCCATTCGCCGTG‑CAGGGGGCGCGCGGCCACCACCGTCAGCAACAAACCTTCCTtg                                                                                 <  1:249621/143‑1 (MQ=255)                                                               ccTGGTACAGGCAGGCCGGGATATCCCCTCTTTTATTCGTGCAGTTTCACTTGCACCCGCCAGCGCCCAGCGccccctgcacggcgaatgggccggtgcagaggacgctgg                                                                                                                >  1:145317‑M1/1‑72 (MQ=255)                                                               ccTGGTACAGGCAGGCCGGGATATCCCCTCTTTTATTCGTGCAGTTTCACTTGCACCCGCCAGCGCCCAGCGccccctgcacggcgaatgggccggtgcagaggacgctgg                                                                                                                <  2:145317‑M1/111‑40 (MQ=255)                                                                   gTACAGGCAGGCCGGGATATCCCCTCTTTTATTCGTGCAGTTTCACTTGCACCCGCCAGCGCCCAGCGTCCTCTGCACCGGCCCATTCGCCGTG‑CAGGGGGCGCGCGGCCACCACCGTCAGCAACAAACCTTCCTTGCTGTGCTGTAcc                                                                     <  8:343631/149‑1 (MQ=255)                                                                            ggcCGGGATATCCCCTCTTTTATTCGTGCAGTTTCACTTGCACCCGCCAGCGCCCAGCGTCCTCTGCACCGGCCCATTCGCCGTG‑CAGGGGGCGCGCGGCCACCACCGTCAGCAACAAACCTTCCTTGCTGTGCTGTACCCGCCAGCTc                                                            <  5:344099/149‑1 (MQ=255)                                                                                      tCCCCTGTTTTATTCGTGCAGTTTCACTTGCACCCGCCAGCGCCCAGCGTCCTCTGCACCGGCCCATTCGCCGTG‑CAGGGGGCGCGCGGCCACCACCGTCAGCAACAAACCTTCCTTGCTGTGCTGTACCCGCCAGCTCACCGGCTTg                                                   <  4:45576/148‑1 (MQ=255)                                                                                       ccccTCTTTTATTCGTGCAGTTTCACTTGCACCCGCCAGCGCCCAGCGTCCTCTGCACCGGCCCATTCGCCGTGCCAGGGGGCGCGCGGCCACCACCGTCa                                                                                                  <  1:192081/101‑1 (MQ=255)                                                                                       ccccTCTTTTATTCGTGCAGTTTCACTTGCACCCGCCAGCGCCCAGCGTCCTCTGCACCGGCCCATTCGCCGTG‑CAGGGGGCGCGCGGCCACCACCGTCa                                                                                                  >  2:192081/1‑100 (MQ=255)                                                                                        cccTCTTTTATTCGTGCAGTTTCACTTGCACCCGCCAGCGCCCAGCGTCCTCTGCACCGGCCCATTCGCCGTG‑CAGGGGGCGCGCGGCCACCACCGTCAGCAACAAACCTTCCTTGCTGTGCTGTACCCGCCAGCTCACCGGCTTGccc                                                >  5:82297/1‑149 (MQ=255)                                                                                         ccTCTTTTATTCGTGCAGTTTCACTTGCACCCGCCAGCGCCCAGCGTCCTCTGCACCGGCCCATTCGCCGTG‑CAGGGGGCGCGCGGCCACCACCGTCAGCAACAAACCTTCCTTGCTGTGCTGTACCCGCCAGCTCACCGGCTTGCCCt                                               >  1:231212/1‑149 (MQ=255)                                                                                         ccTCTTTTATTCGTGCAGTTTCACTTGCACCCGCCAGCGCCCAGCGTCCTCTGCACCGGCCCATTCGCCGTG‑CAGGGGGCGCGCGGCCACCACCGTCAGCAACAAACCTTCCTTGCTGTGCTGTACCCGCCAGCTCACCGGCTTGCCCt                                               >  6:326293/1‑149 (MQ=255)                                                                                           tctTTTATTCGTGCAGTTTCACTTGCACCCGCCAGCGCCCAGCGTCCTCTGCACCGGCCCATTCGCCGTG‑CAGGGGGCGCGCGGCCACCACCGTCAGCAACAAACCTTCCTTGCTGTGCTGTACCCGCCAGCTCACCGCCTTGCCCTg                                              >  1:327362/1‑148 (MQ=255)                                                                                               ttATTCGTGCAGTTTCACTTGCACCCGCCAGCGCCCAGCGTCCTCTGCACCGGCCCATTCGCCGTG‑CAGGGGGCGCGCGGCCACCACCGTCAGCAACAAACCTTCCTTGCTGTGCTGTACCCGCCAGCTCACCGGCTTGCCCTGCa                                            <  5:326293/146‑1 (MQ=255)                                                                                                tATTCGTGCAGTTTCACTTGCACCCGCCAGCGCCCAGCGTCCTCTGCACCGGCCCATTCGCCGTG‑CAGGGGGCGCGCGGCCACCACCGTCAGCAACAAACCTTCCTTGCTGTGCTGTACCCACCAGCTCACCGGCTTGCCCTGCAGGCt                                        >  2:124249/1‑149 (MQ=255)                                                                                                 aTTCGTGCAGTTTCACTTGCACCCGCCAGCGCCCAGCGTCCTCTGCACCGGCCCATTCGCCGTG‑CAGGGGGCGCGCGGCCACCACCGTCAGCAACAAACCTTCCTTGCTGTGCTGTACCCGCCAGCTCACCGGCTTGCCCTGCAGGCt                                        >  2:95155/1‑148 (MQ=255)                                                                                                  ttCGTGCAGTTTCACTTGCACCCGCCAGCGCCCAGCGTCCTCTGCACCGGCCCATTCGCCGTG‑CAGGGGGCGCGCGGCCACCACCGTCAGCAACAAACCTTCCTTGCTGTGCTGTACCCGCCAGCTCACCGGCTTGCCCTGCAGGCTg                                       <  1:95155/148‑1 (MQ=255)                                                                                                       gCAGTTTCACTTGCACCCGCCAGCGCCCAGCGTCCTCTGCACCGGCCCATTCGCCGTG‑CAGGGGGCGCGCGGCCACCACCGTCAGCAACAAACCTTCCTTGCTGTGCTGTACCCGCCAGCTCAcc                                                         >  7:293394/1‑125 (MQ=255)                                                                                                       gCAGTTTCACTTGCACCCGCCAGCGCCCAGCGTCCTCTGCACCGGCCCATTCGCCGTG‑CAGGGGGCGCGCGGCCACCACCGTCAGCAACAAACCTTCCTTGCTGTGCTGTACCCGCCAGCTCAcc                                                         <  8:293394/125‑1 (MQ=255)                                                                                                                 ttGCACCCGCCAGCGCCCAGCGTCCTCTGCACCGGCCCATTCGCCGTG‑CAGGGGGCGCGCGGCCACCACCGTCAGCAACAAACCTTCCTTGCTGTGCTGTACCCGCCAGCTCACCGGCTTGCCCTGCAGGCTGAGCTGCCCTTGCTGAg                       >  6:58480/1‑149 (MQ=255)                                                                                                                     aCCCGCCAGCGCCCAGCGTCCTCTGCACCGGCCCATTCGCCGTG‑CAGGGGGCGCGCGGCCACCACCGTCAGCAACAAACCTTCCTTGCTGTGCTGTACCCGCCAGCTCACCGGCTTGCCCTGCAGGCTGAGCTGCCCTTGCTGAGCCtt                   >  6:280876/1‑149 (MQ=255)                                                                                                                          ccAGCGCCCAGCGTCCTCTGCACCGGCCCATTCGCCGTG‑CAGGGGGCGCGCGGCCACCACCGTCAGCAACAAACCTTCCTTGCTGTGCTGTACCCGCCAGCTCACCGGCTTGCCCTGCAGGCTGAGCTGCCCTTGCTGAGCCTTGCCCt              >  2:46016/1‑149 (MQ=255)                                                                                                                            aGCGCCCAGCGTCCTCTGCACCGGCCCATTCGCCGTG‑CAGGGGGCGCGCGGCCACCACCGTCAGCAACAACCCTTCCTTGCTGTGCTGTACCCGCCAGCTCACCGGCTTGCCCTGCAGGCTGAGCTGCCCTTGCTGAGCCTTGCCCTgg            <  6:297634/149‑1 (MQ=255)                                                                                                                              cgcCCAGCGTCCTCTGCACCGGCCCATTCGCCGTG‑CAGGGGGCGCGCGGCCACCACCGTCAGCAACAAACCTTCCTTGCTGTGCTGTACCCGCCAGCTCACCGGCTTGCCCTGCAGGCTGAGCTGCCCTTGCTGAGCCTTGCCCTGGGc          >  1:224133/1‑149 (MQ=255)                                                                                                                               gcCCAGCGTCCTCTGCACCGGCCCATTCGCCGTG‑CAGGGGGCGCGCGGCCACCACCGTCAGCAACAAACCTTCCTTGCTGTGCTGTACCCGCCAGCTCACCGGCTTGCCCTGCAGGCTGAGCTGCCCTTGCTGAGCCTTGCCCTGGGcc         <  8:92674/149‑1 (MQ=255)                                                                                                                                 ccAGCGTCCTCTGCACCGGCCCATTCGCCGTG‑CAGGGGGcgctgggcgctggcgggtgcaagtgaaactgcacgaataaaagaggggatatcccggcctgcctgtaccagggtccccaaaaggggtactgcgtataaagggg              <  7:221691‑M2/142‑104 (MQ=255)                                                                                                                                 ccAGCGTCCTCTGCACCGGCCCATTCGCCGTG‑CAGGGGGcgctgggcgctggcgggtgcaagtgaaactgcacgaataaaagaggggatatcccggcctgcctgtaccagggtccccaaaaggggtactgcgtataaagggg              >  8:221691‑M2/1‑39 (MQ=255)                                                                                                                                 ccAGCGTCCTCTGCACCGGCCCATTCGCCGTG‑CAGGGGGcgctgggcgctggcgggtgcaagtgaaactgcacgaataaaagaggggatatcccggcctgcctgtaccagg                                             <  2:145317‑M2/111‑73 (MQ=255)                                                                                                                                 ccAGCGTCCTCTGCACCGGCCCATTCGCCGTG‑CAGGGGGcgctgggcgctggcgggtgcaagtgaaactgcacgaataaaagaggggatatcccggcctgcctgtaccagg                                             >  1:145317‑M2/1‑39 (MQ=255)                                                                                                                                  cAGCGTCCTCTGCACCGGCCCATTCGCCGTG‑CAGGGGGCGCGCTGCCACCACCGTCAGCAACAAACCTTCCTTGCTGTGCTGTACCCGCCAGCTCACCGGCTTGCCCTGCAGGCTGAGCTGCCCTTGCTGAGCCTTGCCCTGGGCCTGa      <  5:310437/149‑1 (MQ=255)                                                                                                                                  cAGCGTCCTCTGCACCGGCCCATTCGCCGTG‑CAGGGGGCGCGCGGCCACCACCGTCAGCAACAAACCTTCCTTGCTGTGCTGTACCCGCCAGCTCACCGGCTTGCCCTGCAGGCTGAGCTGCCCTTGCTGAGCCTTGCCCTGGGCCTg       >  8:85238/1‑148 (MQ=255)                                                                                                                                      gTCCTCTGCACCGGCCCATTCGCCGTG‑CAGGGGGCGCGCGGCCACCACCGTCAGCAACAAACCTTCCTTGCTGTGCTGTACCCGCCAGCTCACCGGCTTGCCCTGCAGGCTGAGCTGCCCTTGCTGAGCCTTGCCCTGGGCCTGaaa    >  7:116693/1‑147 (MQ=255)                                                                                                                                      gTCCTCTGCACCGGCCCATTCGCCGTG‑CAGGGGGCGCGCGGCCACCACCGTCAGCAACAAACCTTCCTTGCTGTGCTGTACCCGCCAGCTCACCGGCTTGCCCTGCAGGCTGAGCTGCCCTTGCTGAGCCTTGCCCTGGGCCTGAAACa  <  5:58480/149‑1 (MQ=255)                                                                                                                                      |                                                                                                                                                      GGGGACCTCGGTACAGGCAGGCCGGGTATCCCCCCTTTATACGCAGTACCCCTTTTGGGGACCCTGGTACAGGCAGGCCGGGATATCCCCTCTTTTATTCGTGCAGTTTCACTTGCACCCGCCAGCGCCCAGCGTCCTCTGCACCGGCCCATTCGCCGTG‑CAGGGGGCGCGCGGCCACCACCGTCAGCAACAAACCTTCCTTGCTGTGCTGTACCCGCCAGCTCACCGGCTTGCCCTGCAGGCTGAGCTGCCCTTGCTGAGCCTTGCCCTGGGCCTGAAACA  >  NC_002947/5758400‑5758681

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.