New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5758533	38 (0.650)	5 (0.090)	4/252	NT	11.3%	coding (399/438 nt)	PP_5051	hypothetical protein
	?	NC_002947	= 5758566	41 (0.710)					coding (366/438 nt)	PP_5051	hypothetical protein

AGGCCGGGTATCCCCCCTTTATACGCAGTACCCCTTTTGGGGACCCTGGTACAGGCAGGCCGGGATATCCCCTCTTTTATTCGTGCAGTTTCACTTGCACCCGCCAGCGCCCAGCGTCCTCTGCACCGGCCCATTCGCCGTG‑CAGGGGGCGCGCGGCCACCACCGTCAGCAACAAACCTTCCTTGCTGTGCTGTACCCGCCAGCTCACCGGCTTGCCCTGCAGGCTGAGCTGCCCTTGCTGAGCCTTGCCCTGGGCCTGAAACAGCAACGCCACCGTCCCTTCCACGTTCTCGC  >  NC_002947/5758418‑5758711                                                                                                                                                      |                                                                                                                                                  aggcCGGGTATCCCCCCTTTATACGCAGTACCCCTTTTGGGGACCCTGGTACAGGCAGGCCGGGATATCCCCTCTTTTATTCGTGCAGTTTCACTTGCACCCGCCAGCGCCCAGCGTCCTCTGCACCGGCCCATTCGCCGTG‑CAggggg                                                                                                                                                   >  6:344099/1‑149 (MQ=255)       ggTATCCCCCCTTTATACGCAGTACCCCTTTTGGGGACCCTGGTACAGGCAGGCCGGGATATCCCCTCTTTTATTCGAGCAGTTTCACTTGCACCCGCCAGCGCCCAGCGTCCTCTGCACCGGCCCATTCGCCGTG‑CAGGGGGcgcgcg                                                                                                                                             <  3:4125/149‑1 (MQ=255)          actcccccATTCTACGCAGCAGCACTTTCGGGGTCCCTGGTACAGGCAGGCCGGGATATCCCCTCTTTTATTCGTGCAGTTTCACTTGCACCCGCCAGCGCCCAGCGTCCTCTGCACCGGCCCATTCGCCGTG‑CAGGGGGCGCGCGGcc                                                                                                                                          <  8:65531/146‑1 (MQ=38)                      taCGCAGTACCCCTTTTGGGGACCCTGGTACAGGCAGGCCGGGATATCCCCTCTTTTATTCGTGCAGTTTCACTTGCACCCGCCAGCGCCCAGCGTCCTCTGCACCGGCCCATTCGCCGTG‑CAGGGGGCGCGCGGCCACCACCGTCAg                                                                                                                               >  7:92674/1‑148 (MQ=255)                           aggaCCCCTTTTGGGGACCCTGGTACAGGCAGGCCGGGATATCCCCTCTTTTATTCGTGCAGTTTCACTTGCACCCGCCAGCGCCCAGCGTCCTCTGCACCGGCCCATTCGCCGTG‑CAGGGGGCGCGCGGCCACCACCGTCAGcaacaa                                                                                                                         <  3:23750/146‑1 (MQ=255)                                cccTTTTGGGGACCCTGGTACAGGCAGGCCGGGATATCCCCTCTTTTATTCGTGCAGTTTCACTTGCACCCGCCAGCGCCCAGCGTCCTCTGCACCGGCCCATTCGCCGTG‑CAggggg                                                                                                                                                   <  1:184930/118‑1 (MQ=255)                                cccTTTTGGGGACCCTGGTACAGGCAGGCCGGGATATCCCCTCTTTTATTCGTGCAGTTTCACTTGCACCCGCCAGCGCCCAGCGTCCTCTGCACCGGCCCATTCGCCGTG‑CAggggg                                                                                                                                                   >  2:184930/1‑118 (MQ=255)                                cccTTTTGGGGACCCTGGTACAGGCAGGCCGGGATATCCCCTCTTTTATTCGTGCAGTTTCACTTGCACCCGCCAGCGCCCAGCGTCCTCTGCACCGGCCCATTCGCCGTG‑CAGGGGGCGCGCGGCCACCACCGTCAGCAACAAAcctt                                                                                                                    <  7:6253/149‑1 (MQ=255)                                  cTTTTGGGGACCCTGGTACAGGCAGGCCGGGATATCCCCTCTTTTATTCGTGCAGTTTCACTTGCACCCGCCAGCGCCCAGCGTCCTCTGCACCGGCCCATTCGCCGTG‑CAGGGGGCGCGCGGCCACCACCGTCAGCAACAAAccttcc                                                                                                                  <  7:213334/149‑1 (MQ=255)                                     ttGGGGACCCTGGTACAGGCAGGCCGGGATATCCCCTCTTTTATTCGTGCAGTTTCACTTGCACCCGCCAGCGCCCAGCGTCCTCTGCACCGGCCCATTCGCCGTG‑CAGGGGGCGCGCGGCCACCACCGTCAGCAACAAAccttcctt                                                                                                                <  5:40234/148‑1 (MQ=255)                                      tcggtaCCCTTGTACAGGCAGGCCGGGATATCCCCTCTTTTATTCGTGCAGTTTCACTTGCACCCGCCAGCGCCCAGCGTCCTCTGCACCGGCCCATTCGCCGTG‑CAGGGGGCGCGCGGCCACCACCGTCAGCAACAAACCTTCCTtg                                                                                                               <  1:249621/143‑1 (MQ=255)                                                 gTACAGGCAGGCCGGGATATCCCCTCTTTTATTCGTGCAGTTTCACTTGCACCCGCCAGCGCCCAGCGTCCTCTGCACCGGCCCATTCGCCGTG‑CAGGGGGCGCGCGGCCACCACCGTCAGCAACAAACCTTCCTTGCTGTGCTGTAcc                                                                                                   <  8:343631/149‑1 (MQ=255)                                                          ggcCGGGATATCCCCTCTTTTATTCGTGCAGTTTCACTTGCACCCGCCAGCGCCCAGCGTCCTCTGCACCGGCCCATTCGCCGTG‑CAGGGGGCGCGCGGCCACCACCGTCAGCAACAAACCTTCCTTGCTGTGCTGTACCCGCCAGCTc                                                                                          <  5:344099/149‑1 (MQ=255)                                                                    tCCCCTGTTTTATTCGTGCAGTTTCACTTGCACCCGCCAGCGCCCAGCGTCCTCTGCACCGGCCCATTCGCCGTG‑CAGGGGGCGCGCGGCCACCACCGTCAGCAACAAACCTTCCTTGCTGTGCTGTACCCGCCAGCTCACCGGCTTg                                                                                 <  4:45576/148‑1 (MQ=255)                                                                     ccccTCTTTTATTCGTGCAGTTTCACTTGCACCCGCCAGCGCCCAGCGTCCTCTGCACCGGCCCATTCGCCGTGCCAGGGGGCGCGCGGCCACCACCGTCa                                                                                                                                <  1:192081/101‑1 (MQ=255)                                                                     ccccTCTTTTATTCGTGCAGTTTCACTTGCACCCGCCAGCGCCCAGCGTCCTCTGCACCGGCCCATTCGCCGTG‑CAGGGGGCGCGCGGCCACCACCGTCa                                                                                                                                >  2:192081/1‑100 (MQ=255)                                                                      cccTCTTTTATTCGTGCAGTTTCACTTGCACCCGCCAGCGCCCAGCGTCCTCTGCACCGGCCCATTCGCCGTG‑CAGGGGGCGCGCGGCCACCACCGTCAGCAACAAACCTTCCTTGCTGTGCTGTACCCGCCAGCTCACCGGCTTGccc                                                                              >  5:82297/1‑149 (MQ=255)                                                                       ccTCTTTTATTCGTGCAGTTTCACTTGCACCCGCCAGCGCCCAGCGTCCTCTGCACCGGCCCATTCGCCGTG‑CAGGGGGCGCGCGGCCACCACCGTCAGCAACAAACCTTCCTTGCTGTGCTGTACCCGCCAGCTCACCGGCTTGCCCt                                                                             >  1:231212/1‑149 (MQ=255)                                                                       ccTCTTTTATTCGTGCAGTTTCACTTGCACCCGCCAGCGCCCAGCGTCCTCTGCACCGGCCCATTCGCCGTG‑CAGGGGGCGCGCGGCCACCACCGTCAGCAACAAACCTTCCTTGCTGTGCTGTACCCGCCAGCTCACCGGCTTGCCCt                                                                             >  6:326293/1‑149 (MQ=255)                                                                         tctTTTATTCGTGCAGTTTCACTTGCACCCGCCAGCGCCCAGCGTCCTCTGCACCGGCCCATTCGCCGTG‑CAGGGGGCGCGCGGCCACCACCGTCAGCAACAAACCTTCCTTGCTGTGCTGTACCCGCCAGCTCACCGCCTTGCCCTg                                                                            >  1:327362/1‑148 (MQ=255)                                                                             ttATTCGTGCAGTTTCACTTGCACCCGCCAGCGCCCAGCGTCCTCTGCACCGGCCCATTCGCCGTG‑CAGGGGGCGCGCGGCCACCACCGTCAGCAACAAACCTTCCTTGCTGTGCTGTACCCGCCAGCTCACCGGCTTGCCCTGCa                                                                          <  5:326293/146‑1 (MQ=255)                                                                              tATTCGTGCAGTTTCACTTGCACCCGCCAGCGCCCAGCGTCCTCTGCACCGGCCCATTCGCCGTG‑CAGGGGGCGCGCGGCCACCACCGTCAGCAACAAACCTTCCTTGCTGTGCTGTACCCACCAGCTCACCGGCTTGCCCTGCAGGCt                                                                      >  2:124249/1‑149 (MQ=255)                                                                               aTTCGTGCAGTTTCACTTGCACCCGCCAGCGCCCAGCGTCCTCTGCACCGGCCCATTCGCCGTG‑CAGGGGGCGCGCGGCCACCACCGTCAGCAACAAACCTTCCTTGCTGTGCTGTACCCGCCAGCTCACCGGCTTGCCCTGCAGGCt                                                                      >  2:95155/1‑148 (MQ=255)                                                                                ttCGTGCAGTTTCACTTGCACCCGCCAGCGCCCAGCGTCCTCTGCACCGGCCCATTCGCCGTG‑CAGGGGGCGCGCGGCCACCACCGTCAGCAACAAACCTTCCTTGCTGTGCTGTACCCGCCAGCTCACCGGCTTGCCCTGCAGGCTg                                                                     <  1:95155/148‑1 (MQ=255)                                                                                     gCAGTTTCACTTGCACCCGCCAGCGCCCAGCGTCCTCTGCACCGGCCCATTCGCCGTG‑CAGGGGGCGCGCGGCCACCACCGTCAGCAACAAACCTTCCTTGCTGTGCTGTACCCGCCAGCTCAcc                                                                                       <  8:293394/125‑1 (MQ=255)                                                                                     gCAGTTTCACTTGCACCCGCCAGCGCCCAGCGTCCTCTGCACCGGCCCATTCGCCGTG‑CAGGGGGCGCGCGGCCACCACCGTCAGCAACAAACCTTCCTTGCTGTGCTGTACCCGCCAGCTCAcc                                                                                       >  7:293394/1‑125 (MQ=255)                                                                                               ttGCACCCGCCAGCGCCCAGCGTCCTCTGCACCGGCCCATTCGCCGTG‑CAGGGGGCGCGCGGCCACCACCGTCAGCAACAAACCTTCCTTGCTGTGCTGTACCCGCCAGCTCACCGGCTTGCCCTGCAGGCTGAGCTGCCCTTGCTGAg                                                     >  6:58480/1‑149 (MQ=255)                                                                                                   aCCCGCCAGCGCCCAGCGTCCTCTGCACCGGCCCATTCGCCGTG‑CAGGGGGCGCGCGGCCACCACCGTCAGCAACAAACCTTCCTTGCTGTGCTGTACCCGCCAGCTCACCGGCTTGCCCTGCAGGCTGAGCTGCCCTTGCTGAGCCtt                                                 >  6:280876/1‑149 (MQ=255)                                                                                                        ccAGCGCCCAGCGTCCTCTGCACCGGCCCATTCGCCGTG‑CAGGGGGCGCGCGGCCACCACCGTCAGCAACAAACCTTCCTTGCTGTGCTGTACCCGCCAGCTCACCGGCTTGCCCTGCAGGCTGAGCTGCCCTTGCTGAGCCTTGCCCt                                            >  2:46016/1‑149 (MQ=255)                                                                                                          aGCGCCCAGCGTCCTCTGCACCGGCCCATTCGCCGTG‑CAGGGGGCGCGCGGCCACCACCGTCAGCAACAACCCTTCCTTGCTGTGCTGTACCCGCCAGCTCACCGGCTTGCCCTGCAGGCTGAGCTGCCCTTGCTGAGCCTTGCCCTgg                                          <  6:297634/149‑1 (MQ=255)                                                                                                            cgcCCAGCGTCCTCTGCACCGGCCCATTCGCCGTG‑CAGGGGGCGCGCGGCCACCACCGTCAGCAACAAACCTTCCTTGCTGTGCTGTACCCGCCAGCTCACCGGCTTGCCCTGCAGGCTGAGCTGCCCTTGCTGAGCCTTGCCCTGGGc                                        >  1:224133/1‑149 (MQ=255)                                                                                                             gcCCAGCGTCCTCTGCACCGGCCCATTCGCCGTG‑CAGGGGGCGCGCGGCCACCACCGTCAGCAACAAACCTTCCTTGCTGTGCTGTACCCGCCAGCTCACCGGCTTGCCCTGCAGGCTGAGCTGCCCTTGCTGAGCCTTGCCCTGGGcc                                       <  8:92674/149‑1 (MQ=255)                                                                                                               ccAGCGTCCTCTGCACCGGCCCATTCGCCGTG‑CAGGGGGcgctgggcgctggcgggtgcaagtgaaactgcacgaataaaagaggggatatcccggcctgcctgtaccagggtccccaaaaggggtactgcgtataaagggg                                            <  7:221691‑M2/142‑104 (MQ=255)                                                                                                               ccAGCGTCCTCTGCACCGGCCCATTCGCCGTG‑CAGGGGGcgctgggcgctggcgggtgcaagtgaaactgcacgaataaaagaggggatatcccggcctgcctgtaccagggtccccaaaaggggtactgcgtataaagggg                                            >  8:221691‑M2/1‑39 (MQ=255)                                                                                                               ccAGCGTCCTCTGCACCGGCCCATTCGCCGTG‑CAGGGGGcgctgggcgctggcgggtgcaagtgaaactgcacgaataaaagaggggatatcccggcctgcctgtaccagg                                                                           <  2:145317‑M2/111‑73 (MQ=255)                                                                                                               ccAGCGTCCTCTGCACCGGCCCATTCGCCGTG‑CAGGGGGcgctgggcgctggcgggtgcaagtgaaactgcacgaataaaagaggggatatcccggcctgcctgtaccagg                                                                           >  1:145317‑M2/1‑39 (MQ=255)                                                                                                                cAGCGTCCTCTGCACCGGCCCATTCGCCGTG‑CAGGGGGCGCGCTGCCACCACCGTCAGCAACAAACCTTCCTTGCTGTGCTGTACCCGCCAGCTCACCGGCTTGCCCTGCAGGCTGAGCTGCCCTTGCTGAGCCTTGCCCTGGGCCTGa                                    <  5:310437/149‑1 (MQ=255)                                                                                                                cAGCGTCCTCTGCACCGGCCCATTCGCCGTG‑CAGGGGGCGCGCGGCCACCACCGTCAGCAACAAACCTTCCTTGCTGTGCTGTACCCGCCAGCTCACCGGCTTGCCCTGCAGGCTGAGCTGCCCTTGCTGAGCCTTGCCCTGGGCCTg                                     >  8:85238/1‑148 (MQ=255)                                                                                                                    gTCCTCTGCACCGGCCCATTCGCCGTG‑CAGGGGGCGCGCGGCCACCACCGTCAGCAACAAACCTTCCTTGCTGTGCTGTACCCGCCAGCTCACCGGCTTGCCCTGCAGGCTGAGCTGCCCTTGCTGAGCCTTGCCCTGGGCCTGaaa                                  >  7:116693/1‑147 (MQ=255)                                                                                                                    gTCCTCTGCACCGGCCCATTCGCCGTG‑CAGGGGGCGCGCGGCCACCACCGTCAGCAACAAACCTTCCTTGCTGTGCTGTACCCGCCAGCTCACCGGCTTGCCCTGCAGGCTGAGCTGCCCTTGCTGAGCCTTGCCCTGGGCCTGAAACa                                <  5:58480/149‑1 (MQ=255)                                                                                                                     tCCTCTGCACCGGCCCATTCGCCGTG‑CAGGGGGcgctgggcgctggcgggtgcaagtgaaactgcacgaataaaagaggggatatcccggcctgcctgtaccagggtccccaaaaggggtactgcgtataaaggggggatacccggcct                               <  3:282124‑M2/149‑117 (MQ=255)                                                                                                                     tCCTCTGCACCGGCCCATTCGCCGTG‑CAGGGGGCGCGCGGCCACCACCGTCAGCAACAAACCTTCCTTGCTGTGCTGTACCCGCCAGCTCACCGGCTTGCCCTGCAGGCTGAGCTGCCCTTGCTGAGCCTTGCCCTGGGCCTGAAACAg                               <  6:343693/149‑1 (MQ=255)                                                                                                                     tCCTCTGCACCGGCCCATTCGCCGTG‑CAGGGGGCGCGCGGCCACCACCGTCAGCAACAAACCTTCCTTGCTGTGCTGTACCCGCCAGCTCACCGGCTTGCCCTGCAGGCTGAGCTGCCCTTGCTGAGCCTTGCCCTGGGCCTGAAACAg                               <  6:82297/149‑1 (MQ=255)                                                                                                                            cACCGGCCCATTCGCCGTG‑CAGGGGGCGCGCGGCCACCACCGTCAGCAACAAACCTTCCTTGCTGTGCTGTACCCGCCAGCTCACCGGCTTGCCCTGCAGGCTGAGCTGCCCTTGCTGAGCCTTGCCCTGGGCCTGAAACAGCAAc                           <  1:46016/146‑1 (MQ=255)                                                                                                                             aCCGGCCCATTCGCCGTG‑CAGGGGGCGCGCGGCCACCACCGTCAGCAACAAACCTTCCTTGCTGTGCTGTACCCGCCAGCTCACCGGCTTGCCCTGCAGGCTGAGCTGCCCTTGCTGAGCCTTGCCCTGGGCCTGAAACAGCAACGCCa                       <  2:224133/149‑1 (MQ=255)                                                                                                                             aCCGGCCCATTCGCCGTG‑CAGGGGGCGCGCGGCCACCACCGTCAGCAACAAACCTTCCTTGCTGTGCTGTACCCGCCAGCTCACCGGCTTGCCCTGCAGGCTGAGCTGCCCTTGCTGAGCCTTGCCCTGGGCCTGAAACAGCAACGCCa                       >  8:38322/1‑149 (MQ=255)                                                                                                                                         gCCGTG‑CAGGGGGCGCGCGGCCACCACCGTCAGCAACAAACCTTCCTTGCTGTGCTGTACCCGCCAGCTCACCGGCTTGCCCTGCAGGCTGAGCTGCCCTTGCTGAGCCTTGCCCTGGGCCTGAAACAGCAACGCCACCGTCCCTTCCa           <  7:85238/149‑1 (MQ=255)                                                                                                                                          ccGTG‑CAGGGGGCGCGCGGCCACCACCGTCAGCAACAAACCTTCCTTGCTGTGCTGTACCCGCCAGCTCACCGGCTTGCCCTGCAGGCTGAGCTGCCCTTGCTGAGCCTTGCCCTGGGCCTGAAACAGCAACGCCACCGTCCCTTCCAc          <  2:231212/149‑1 (MQ=255)                                                                                                                                             tG‑CAGGGGGCGCGCGGCCACCACCGTCAGCAACAAACCTTCCTTGCTGTGCTGTACCCGCCAGCTCACCGGCTTGCCCTGCAGGCTGAGCTGCCCTTGCTGAGCCTTGCCCTGGGCCTGAAAc                                 <  3:206298/123‑1 (MQ=255)                                                                                                                                             tG‑CAGGGGGCGCGCGGCCACCACCGTCAGCAACAAACCTTCCTTGCTGTGCTGTACCCGCCAGCTCACCGGCTTGCCCTGCAGGCTGAGCTGCCCTTGCTGAGCCTTGCCCTGGGCCTGAAAc                                 >  4:206298/1‑123 (MQ=255)                                                                                                                                                  gggggCGCGCGGCCACCACCGTCAGCAACAAACCTTCCTTGCTGTGCTGTACCCGCCAGCTCACCGGCTTGCCCTGCAGGCTGAGCTGCCCTTGCTGAGCCTTGCCCTGGGCCTGAAACAGCAACGCCACCGTCCCTTCCACGTTCTCg   <  5:280876/149‑1 (MQ=255)                                                                                                                                                   ggggCGCGCGGCCACCACCGTCAGCAACAAACCTTCCTTGCTGTGCTGTACCCGCCAGCTCACCGGCTTGCCCTGCAGGCTGAGCTGCCCTTGCTGAGCCTTGCCCTGGGCCTGAAACAGCAACGCCACCGTCCCTTCCACGTTCTCGc  >  4:256312/1‑149 (MQ=255)                                                                                                                                                      |                                                                                                                                                  AGGCCGGGTATCCCCCCTTTATACGCAGTACCCCTTTTGGGGACCCTGGTACAGGCAGGCCGGGATATCCCCTCTTTTATTCGTGCAGTTTCACTTGCACCCGCCAGCGCCCAGCGTCCTCTGCACCGGCCCATTCGCCGTG‑CAGGGGGCGCGCGGCCACCACCGTCAGCAACAAACCTTCCTTGCTGTGCTGTACCCGCCAGCTCACCGGCTTGCCCTGCAGGCTGAGCTGCCCTTGCTGAGCCTTGCCCTGGGCCTGAAACAGCAACGCCACCGTCCCTTCCACGTTCTCGC  >  NC_002947/5758418‑5758711

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.