New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5783559	44 (0.750)	4 (0.070)	4/244	NT	8.0%	coding (2034/3309 nt)	kefA	intermediate mechanosensitive channel protein
	?	NC_002947	= 5783588	51 (0.920)					coding (2063/3309 nt)	kefA	intermediate mechanosensitive channel protein

GGTGGCCGAGCACCAGCCTTCGGCACTGGCAGACGACGTGTTGGGCATCGGCGTGGTGCTGACCTGCTATGCGCTAATGGCCTGGCTGCTCAGCCGTCTGCTGCTCAGCAGCCCGGCACACCGTGACACCTCGCTGTTCCGCAGGGCGGTGGGGGTAGCGTTCACCGCCCTGCCCATCGCCCTGTTCGTCGCCGTGTGCTTCGGCTACTACTACACGGCACTGAAGCTTACCGATCGACTCATCTACACCCTGTACCTGCTGCTGTTCTGGTTGGTGATCGAAGCCGCCTTCGTGC  >  NC_002947/5783412‑5783707                                                                                                                                                    |                                                                                                                                                     ggtggcCGAGCACCAGCCTTCGGCACTGGCAGACGACGTGTTGGGCATCGGCGTGGTGCTGACCTGCTATGCGCTAATGGCCTGGCTGCTCAGCCGTCTGCTGCTCAGCAGCCCGGCACACCGTGACACCTCGCTGTTCCGCAGGGCgg                                                                                                                                                     >  7:118970/1‑149 (MQ=255)    ggcCGAGCACCAGCCTTCGGCACTGGCAGACGACGTGTTGGGCATCGGCGGGGTGCTGACCTGCTATGCGCTAATGGCCTGGCTGCTCAGCCGTCTGCTGCTCAGCAGCCCGGCACACCGTGACACCTCGCTGTTCCGCAGGGCGGTgg                                                                                                                                                  <  1:305584/149‑1 (MQ=255)    ggcCGAGCACCAGCCTTCCGCACTGGCAGACGACGTGTTGGGCATCGGCGTGGTGCTGACCTGCTATGCGCTAATGGCCTGGCTGCTCAGCCGTCTGCTGCTCAGCAGCCCGGCACACCGTGACACCTCGCTGTTCCGCAGGGCGGTgg                                                                                                                                                  <  1:330785/149‑1 (MQ=255)      ccGAGCACCAGCCTTCGGCACTGGCAGACGACGTGTTGGGCATCGGCGTGGTGCTGACCTGCTATGCGCTAATGGCCTGGCTGCTCAGCCGTCTGCTGCTCAGCAGCCCGGCACACCGTGACACCTCGCTGTTCCGCAGGGCGGTgggg                                                                                                                                                <  8:118970/149‑1 (MQ=255)      ccGAGCACCAGCCTTCGGCACTGGCAGACGACGTGTTGGGCATCGGCGTGGTGCTGACCTGCTATGCGCTAATGGCCTGGCTGCTCAGCCGTCTGCTGCTCAGCAGCCCGGCACACCGTGACACCTCGCTGTTCCGCAGGGCGGTgggg                                                                                                                                                <  1:116899/149‑1 (MQ=255)       cGAGCACCAGCCTTCGGCACTGGCAGACGACGTGTTGGGCATCGGCGTGGTGCTGACCTGCTATGCGCTAATGGCCTGGCTGCTCAGCCGTCTGCTGCTCAGCAGCCCGGCACACCGTGACACCTCGCTGTTCCGCAGGGCGGTggggg                                                                                                                                               >  4:323306/1‑149 (MQ=255)                       gCACTGGCAGACGACGTGTTGGGCATCGGCGTGGTGCTGACCTGCTATGCGCTAATGGCCTGGCTGCTCAGCCGTCTGCTGCTCAGCAGCCCGGCACACCGTGACACCTCGCTGTTCCGCAGGGCGGTGGGGGTAGCGTTCACCGCCCt                                                                                                                               <  2:173827/149‑1 (MQ=255)                             gCAGACGACGTGTTGGGCATCGGCGTGGTGCTGACCTGCTATGCGCTAATGGCCTGGCTGCTCAGCCGTCTGCTGCTCAGCAGCCCGGCACACCGTGACACCTCGCTGTTCCGCAGGGCGGTGGGGGTAGCGTTCACCGCCCTGCCCAt                                                                                                                         >  7:257004/1‑149 (MQ=255)                                 acgacgTGTTGGGCATCGGCGTGGTGCTGACCTGCTATGCGCTAATGGCCTGGCTGCTCAGCCGTCTGCTGCTCAGCAGCCCGGCACACCGTGACACCTCGCTGTTCCGCAGGGCGGTGGGGGTAGCGTTCACCGCCCTGCCCATcgcc                                                                                                                     >  8:228514‑M2/1‑145 (MQ=255)                                    acgTGTTGGGCATCGGCGTGGTGCTGACCTGCTATGCGCTAATGGCCTGGCTGCTCAGCCGTCTGCTGCTCAGCAGCCCGGCACACCGTGACACCTCGCTGTTCCGCAGGGCGGTGGGGGTAGCGTTCACCGCCCTGCCCATcgccctg                                                                                                                  <  7:140808‑M2/149‑8 (MQ=255)                                           gggCATCGGCGTGGTGCTGACCTGCTATGCGCTAATGGCCTGGCTGCTCAGCCGTCTGCTGCTCAGCAGCCCGGCACACCGTGACACCTCGCTGTTCCGCAGGGCGatgggcagggcggtgaacgctacccccaccgccc                                                                                                                    <  7:280602‑M1/140‑35 (MQ=255)                                           gggCATCGGCGTGGTGCTGACCTGCTATGCGCTAATGGCCTGGCTGCTCAGCCGTCTGCTGCTCAGCAGCCCGGCACACCGTGACACCTCGCTGTTCCGCAGGGCGatgggcagggcggtgaacgctacccccaccgccc                                                                                                                    >  8:280602‑M1/1‑106 (MQ=255)                                           gggCATCGGCGTGGTGCTGACCTGCTATGCGCTAATGGCCTGGCTGCTCAGCCGTCTGCTGCTCAGCAGCCCGGCACACCGTGACACCTCGCTGTTCCGCAGGGCGGTGGGGGTAGCGTTCACCGCCCTGCCCATCGCCCTGTtcgtcg                                                                                                           >  8:272737/1‑149 (MQ=255)                                             gCATCGGCGTGGTGCTGACCTGCTATGCGCTAATGGCCTGGCTGCTCAGCCGTCTGCTGCTCAGCAGCCCGGCACACCGTGACACCTCGCTGTTCCGCAGGGCGGTGGGGGTAGCGTTCACCGCCCTGCCCATCGCCCTGTTCGTCGcc                                                                                                         >  7:209651/1‑149 (MQ=255)                                               aTCGGCGTGGTGCTGACCTGCTATGCGCTAATGGCCTGGCTGCTCAGCCGTCTGCTGCTCAGTAGCCCGGCACACCGTGACACCTCGCTGTTCCCCAGGGCGGTGGGGGTAGCGTTCACCGCCCTGCCCATCGCCCTGTTCGTCGCCgt                                                                                                       >  7:289137/1‑149 (MQ=255)                                               aTCGGCGTGGTGCTGACCTGCTATGCGCTAATGGCCTGGCTGCTCAGCCGTCTGCTGCTCAGCAGCCCGGCACACCGTGACACCTCGCTGTTCCGCAGGGCGGTGGGGGTAGCGTTCACCGCCCTGCCCATCGCCCTGTTCGTCGCCgt                                                                                                       <  8:257004/149‑1 (MQ=255)                                                              aCCTGCTATGCGCTAATGACCTGGCTGCTCAGCCGTCTGCTGCTCAGCAGCCCGGCACACCGTGACACCTCGCTGTTCCGCAGGGCGGTGGGGGTAGCGTTCACCGCCCTGCCCATCGCCCTGTTCGTCGCCGTGTGCTTCGGctacta                                                                                        >  4:260704/1‑149 (MQ=255)                                                                              tGGCCTGGCTGCTCAGCCGTCTGCTGCTCAGCAGCCCGGCACACCGTGACACCTCGCTGTTCCGCAGGGCGGTGGGGGTAGCGTTCACCGCCCTGCCCATCGCCCTGTTCGTCGCCGTGTGCTTCGGCTACTACTACACGGCACTGAAg                                                                        <  8:140808/149‑1 (MQ=255)                                                                               ggCCTGGCTGCTCAGCCGTCTGCTGCTCAGCAGCCCGGCACACCGTGACACCTCGCTGTTCCGCAGGGCGGTGGGGGTAGCGTTCACCGCCCTGCCCATCGCCCTGTTCGTCGCCGTGTGCTTCGGCTACTACTACACGGCACTGAAGc                                                                       >  8:11791/1‑149 (MQ=255)                                                                                gCCTGGCTGCTCAGCCGTCTGCTGCTCAGCAGCCCGGCACACCGTGACACCTCGCTGTTCCGCAGGGCGGTGGGGGTAGCGTTCACCGCCCTGCCCATCGCCCTGTTCGTCGCCGTGTGCTTCGGCTACTACTACACGGCACTGAAGc                                                                       <  2:218195/148‑1 (MQ=255)                                                                                 ccTGGCTGCTCAGCCGTCTGCTGCTCAGCAGCCCGGCACACCGTGACACCTCGCTGTTCCGCAGGGCGGTGGGGGTAGCGTTCACCGCCCTGCCCATCGCCCTGTTCGTCGCCGTGTGCTTCGGCTACTACTACACGGCACTGAAGCtt                                                                     <  2:184771/149‑1 (MQ=255)                                                                                  cTGGCTGCTCAGCCGTCTGCTGCTCAGCAGCCCGGCACACCGTGACACCTCGCTGTTCCGCAGGGCGGTGGGGGTAGCGTTCACCGCCCTGCCCATCGCCCTGTTCGTCGCCGTGTGCTTCGGc                                                                                             >  2:358679/1‑124 (MQ=255)                                                                                  cTGGCTGCTCAGCCGTCTGCTGCTCAGCAGCCCGGCACACCGTGACACCTCGCTGTTCCGCAGGGCGGTGGGGGTAGCGTTCACCGCCCTGCCCATCGCCCTGTTCGTCGCCGTGTGCTTCGGc                                                                                             <  1:358679/124‑1 (MQ=255)                                                                                     gctgctCAGCCGTCTGCTGCTCAGCAGCCCGGCACACCGTGACACCTCGCTGTTCCGCAGGGCGGTGGGGGTAGCGTTCACCGCCCTGCCCATCGCCCTGTTCGTCGCCGTGTGCTTCGGCTACTACTACACGGCACTGAAGCTTAcc                                                                  >  1:351901/1‑148 (MQ=255)                                                                                        gctCAGCCGTCTGCTGCTCAGCAGCCCGGCACACCGTGACACCTCGCTGTTCCGCAGGGCGGTGGGGGTAGCGTTCACCGCCCTGCCCATCGCCCAGTTCGTCGCCGTGTGCTTCGGCTACTACTACACGGCACTGAAGCTTACCGATc                                                              >  1:303804/1‑149 (MQ=255)                                                                                        gctCAGCCGTCTGCTGCTCAACAGCCCGGCACACCGTGACACCTCGCTGTTCCGCAGGGCGGTGGGGGTAGCGTTCACCGCCCTGCCCATCGCCCTGTTCGTCGCCGTGTGCTTCGGCTACTACTACACGGCACTGAAGCt                                                                      <  7:290227/141‑1 (MQ=255)                                                                                        gctCAGCCGTCTGCTGCTCAACAGCCCGGCACACCGTGACACCTCGCTGTTCCGCAGGGCGGTGGGGGTAGCGTTCACCGCCCTGCCCATCGCCCTGTTCGTCGCCGTGTGCTTCGGCTACTACTACACGGCACTGAAGCt                                                                      >  8:290227/1‑141 (MQ=255)                                                                                         ctCAGCCGTCTGCTGCTCAGCAGCCCGGCACACCGTGACACCTCGCTGTTCCGCAGGGCGGTGGGGGTAGCGTTCACCGCCCTGCCCATCGCCCTGTTCGTCGCCGTGTGCTTCGGCTACTACTACACGGCACTGAAGCTTACCGATc                                                              <  2:295816/148‑1 (MQ=255)                                                                                          tCAGCCGTCTGCTGCTCAGCAGCCCGGCACACCGTGACACCTCGCTGTTCCGCAGGGCGGTGGGGGTAGCGTTCACCGCCCTGCCCATCGCCCTGTTCGTCGCCGTGTGCTTCGGCTACTACTACACGGCACTGAAGCTTACCGATCGa                                                            <  3:260704/149‑1 (MQ=255)                                                                                           cAGCCGTCTGCTGCTCAGCAGCCCGGCACACCGTGACACCTCGCTGTTCCGCAGGGCGGTGGGGGTAGCGTTCACCGCCCTGCCCATCGCCCTGTTCGTCGCCATGTGCTTCGGCTACAACTACACGGCACTGCAGCTTACAGATCGa                                                            >  8:302932/1‑148 (MQ=255)                                                                                            aGCCGTCTGCTGCTCAGCAGCCCGGCACACCGTGACACCTCGCTGTTCCGCAGGGCGGTGGGGGTAGCGTTCACCGCCCTGCCCATCGCCCTGTTCGTCGCCGTGTGCTTCGGCTACTACTACACGGCACTGAAGCTTACCGATCGACt                                                          >  2:3809/1‑149 (MQ=255)                                                                                             gCCGTCTGCTGCTCAGCAGCCCGGCACACCGTGACACCTCGCTGTTCCGCAGGGCGGTGGGGGTAGCGTTCACCGCCCTGCCCATCGCCCTGTTCGTCGCCGTGTGCTTCGGCTACTACTACACGGCACTGAAGCTTACCGATCGACTc                                                         <  7:272737/149‑1 (MQ=255)                                                                                                 tCTGCTGCTCAGCAGCCCGGCACACCGTGACACCTCGCTGTTCCGCAGGGCGGTGGGGGTAGCGTTCACCGCCCTGCCCATCGCCCTGTTCGTCGCCGTGTGCTTCGGcta                                                                                           <  4:252143/111‑1 (MQ=255)                                                                                                 tCTGCTGCTCAGCAGCCCGGCACACCGTGACACCTCGCTGTTCCGCAGGGCGGTGGGGGTAGCGTTCACCGCCCTGCCCATCGCCCTGTTCGTCGCCGTGTGCTTCGGcta                                                                                           >  3:252143/1‑111 (MQ=255)                                                                                                    gctgctCAGCAGCCCGGCACACCGTGACACCTCGCTGTTCCGCAGGGCGGTGGGGGTAGCGTTCACCGCCCTGCCCATCGCCCTGTTCGTCGCCGTGTGCTTCGGCTACTACTACACGGCACTGAAGCTTACCGATCGACTCATCTaca                                                  >  4:102682/1‑149 (MQ=255)                                                                                                     ctgctCAGCAGCCCGGCACACCGTGACACCTCGCTGTTCCGCAGGGCGatgggcagggcggtgaacgctacccccaccgccct                                                                                                                   >  3:368941‑M1/1‑48 (MQ=255)                                                                                                     ctgctCAGCAGCCCGGCACACCGTGACACCTCGCTGTTCCGCAGGGCGatgggcagggcggtgaacgctacccccaccgccct                                                                                                                   <  4:368941‑M1/83‑36 (MQ=255)                                                                                                     ctgctCAGCAGCCCGGCACACCGTGACACCTCGCTGTTCCGCAGGGCGGTGGGGGTAGCGTTCACCGCCCTGCCCATCGCCCTGTTCGTCGCCGTGTGCTTCGGCTACTACTACACGGCACTGAAGCTTACCGATCGACTCATATacac                                                 >  4:291191/1‑149 (MQ=255)                                                                                                        ctCAGCAGCCCGGCACACCGTGACACCTCGCTGTTCCGCAGGGCGGTGGGGGTAGCGTTCACCGCCCTGCCCATCGCCCTGTTCGTCGCCGTGTGCTTCGGCTACTACTACACGGCACTGAAGCTTACCGATCGACTCATCTACAcc                                                <  8:209651/147‑1 (MQ=255)                                                                                                        ctCAGCAGCCCGGCACACCGTGACACCTCGCTGTTCCGCAGGGCGGTGGGGGTAGCGTTCACCGCCCTGCCCATCGCCCTGTTCGTCGCCGTGTGCTTCGGCTACTACTACACGGCACTGAAGCTTACCGATCGACTCATCTACACCCt                                              >  1:224680/1‑149 (MQ=255)                                                                                                                   ggCACACCGTGACACCTCGCTGTTCCGCAGGGCGGTGGGGGTAGCGTTCACCGCCCTGCCCATCGCCCTGTTCGTCGCCGTGTGCTTCGGCTACTACTACACGGCACTGAAGCTTACCGATCGAc                                                           >  1:88629/1‑125 (MQ=255)                                                                                                                   ggCACACCGTGACACCTCGCTGTTCCGCAGGGCGGTGGGGGTAGCGTTCACCGCCCTGCCCATCGCCCTGTTCGTCGCCGTGTGCTTCGGCTACTACTACACGGCACTGAAGCTTACCGATCGAc                                                           <  2:88629/125‑1 (MQ=255)                                                                                                                         ccGTGACACCTCGCTGTTCCGCAGGGCGGTGGGGGTAGCGTTCACCGCCCTGCCCATCGCCCTGTTCGTCGCCGTGTGCTTCGGCTACTACTACACGGCACTGAAGCTTACAGATCGACTCATCTACACCCTGTACCTGCTGCTGTTCt                             >  2:136901/1‑149 (MQ=255)                                                                                                                             gACACCTCGCTGTTCCGCAGGGCGGTGGGGGTAGCGTTCACCGCCCTGCCCATCGCCCTGTTCGTCGCCGTGTGCTTCGGCTACTACTACACGGCACTGAAGCTTACCGATCGACTCATCTACACCCTGTACCTGCTGCTGTTCtggtt                         >  3:245891/1‑149 (MQ=255)                                                                                                                                  cTCGCTGTTCCGCAGGGCGGTGGGGGTAGCGTTCACCGCCCTGCCCATCGCCCTGTTCGTCGCCGTGTGCTTCGGCTACTACTACACGGCACTGAAGCTTACCGATCGACTCATCTACACCCTGTACCTGCTGCTGTTCTGGTTGGTGa                    >  6:325650/1‑149 (MQ=255)                                                                                                                                  cTCGCTGTTCCGCAGGGCGGTGGGGGTAGCGTTCACCGCCCTGCCCATCGCCCTGTTCGTCGCCGTGTGCTTCGGCTACTACTACACGGCACTGAAGCTTACCGATCGACTCATCTACACCCTGTACCTGCTGCTGTTCTGGTTGGTGa                    >  3:187970/1‑149 (MQ=255)                                                                                                                                     gCTGTTCCGCAGGGCGGTGGGGGTAGCGTTCACCGCCCTGCCCATCGCCCTGTTCGTCGCCGTGTGCTTCGGCTACTACTACACGGCACTGAAGCTTACCGATCGACTCATCTACACCCTGTACCTGCTGCTGTTCTGGTTGGTGATc                  <  2:351901/148‑1 (MQ=255)                                                                                                                                     gCTGTTCCGCAGGGCGGTGGGGGTAGCGTTCACCGCCCTGCCCATCGCCCTGTTCGTCGCCGTGTGCTTCGGCTACTACTACACGGCACTGAAGCTTACCGATCGACTCATCTACACCCTGTACCTGCTGCTGTTCTGGTTGGTGATCg                 <  2:224680/149‑1 (MQ=255)                                                                                                                                      cTGTTCCGCAGGGCGGTGGGGGTAGCGTTCACCGCCCTGCCCATCGCCCTGTTCGTCGCCGTGTGCTTCGGCTACTACTACACGGCACTGAAGCTTACCGATCGACTCATCTACACCCTGTACCTGCTGCTGTTCTGGTTGGTGATCGa                <  1:3809/149‑1 (MQ=255)                                                                                                                                         ttCCGCAGGGCGGTGGGGGTAGCGTTCCCCGCCCTGCCCATCGCCGTGTTTGTCGCCGTGTGCTTCGGCTACTACTACACGGCACTGAAGCTTACCGATCGACTCATCTACACCCTGTACCTGCTGCTGTTCTGGTTGGTGATCGAAgc             >  3:98946/1‑149 (MQ=255)                                                                                                                                         ttCCGCAGGGCGGTGGGGGTAGCGTTCACCGCCCTGCCCATCGCCCTGTTCGTCGCCGTGTGCTTCGGCTACTACTACACGGCACTGAAGCTTACCGATCGACTCATCTACACCCTGTACCTGCTGCTGTTCtg                            <  5:366869/134‑1 (MQ=255)                                                                                                                                         ttCCGCAGGGCGGTGGGGGTAGCGTTCACCGCCCTGCCCATCGCCCTGTTCGTCGCCGTGTGCTTCGGCTACTACTACACGGCACTGAAGCTTACCGATCGACTCATCTACACCCTGTACCTGCTGCTGTTCtg                            >  6:366869/1‑134 (MQ=255)                                                                                                                                         ttCCGCAGGGCGGTGGGGGTAGCGTTCACCGCCCTGCCCATCGCCCTGTTCGTCGCCGTGTGCTTCGGCTACTACTACACGGCACTGAAGCTTACCGATCGACTCATCTACACCCTGTACCTGCTGCTGTTCTGGTTGGTGATCGaa               <  3:102682/147‑1 (MQ=255)                                                                                                                                              cAGGGCGatgggcagggcggtgaacgctacccccaccgccctgcggaacagcgaggtgtcacggtgtgccgggctgctgagcagcagacggctgagcagccaggccattagcgcatagcaggtcagcaccacgccgatgcccaacacgt        <  7:140808‑M1/149‑143 (MQ=255)                                                                                                                                               aGGGCGGTGGGGGTAGCGTTCACCGCCCTGCCCATcgccctgcggaacagcgaggtgtcacggtgtgccgggctgctgagcag                                                                         >  3:368941‑M2/1‑35 (MQ=255)                                                                                                                                               aGGGCGGTGGGGGTAGCGTTCACCGCCCTGCCCATcgccctgcggaacagcgaggtgtcacggtgtgccgggctgctgagcag                                                                         <  4:368941‑M2/83‑49 (MQ=255)                                                                                                                                                gggCGGTGGGGGTAGCGTTCACCGCCCTGCCCATcgccctgcggaacagcgaggtgtcacggtgtgccgggctgctgagcagcagacggctgagcagccaggccattagcgcatagcaggtcagcaccacgccgatgccc               <  7:280602‑M2/140‑107 (MQ=255)                                                                                                                                                gggCGGTGGGGGTAGCGTTCACCGCCCTGCCCATcgccctgcggaacagcgaggtgtcacggtgtgccgggctgctgagcagcagacggctgagcagccaggccattagcgcatagcaggtcagcaccacgccgatgccc               >  8:280602‑M2/1‑34 (MQ=255)                                                                                                                                                 ggCGatgggcagggcggtgaacgctacccccaccgccctgcggaacagcgaggtgtcacggtgtgccgggctgctgagcagcagacggctgagcagccaggccattagcgcatagcaggtcagcaccacgccgatgcccaacacgtcgt     >  8:228514‑M1/1‑4 (MQ=255)                                                                                                                                                    ggTGGGGGTAGCGTTCACCGCCCTGCCCATCGCCCTGTTCGTCGCCGTGTGCTTCGGCTACTACTACACGGCACTGAAGCTTACCGATCGACTCATCTACACCCTGTACCTGCTGCTGTTCTGGTTGGTGATCGAAGCCGCCTTCGTgc  >  5:99554/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                     GGTGGCCGAGCACCAGCCTTCGGCACTGGCAGACGACGTGTTGGGCATCGGCGTGGTGCTGACCTGCTATGCGCTAATGGCCTGGCTGCTCAGCCGTCTGCTGCTCAGCAGCCCGGCACACCGTGACACCTCGCTGTTCCGCAGGGCGGTGGGGGTAGCGTTCACCGCCCTGCCCATCGCCCTGTTCGTCGCCGTGTGCTTCGGCTACTACTACACGGCACTGAAGCTTACCGATCGACTCATCTACACCCTGTACCTGCTGCTGTTCTGGTTGGTGATCGAAGCCGCCTTCGTGC  >  NC_002947/5783412‑5783707

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.