New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	716611 =	56 (0.950)	3 (0.050)	3/250	NT	5.6%	coding (189/465 nt)	PP_0610	hypothetical protein
	?	NC_002947	716644 =	46 (0.810)					coding (222/465 nt)	PP_0610	hypothetical protein

CTGCCCTGCGCGACGCGCTGGTGGAAACGCGGATGACCGGCTACCTGAGCGATGGCCTGATGGCGCTGGAAGAGGCTGAGGCCACTTTGCTGGCCGGGGTACGCGAACTTGAACGGGCGCCCCCTGACGCTTGTAGCGCGTGCCCGCCACCGCCCAGGCCGCACGATCTGATTGGGCAGTGGCAAAGTACCCAGACCGGCTTTTTCCAGCTGCAGAACCTGGGTGTCAGCGAACGTGCCGCGCACATGCCCGAAGGGCAGCCGGTTAGCCTGTTCCGGATTACCGCCGT  >  NC_002947/716496‑716784                                                                                                                                                     |                                                                                                                                             cTGCCCTGCGCGACGCGCTGGTGGAAACGCGGATGACCGGCTACCTGAGCGATGGCCTGATGGCGCTGGAAGAGGCTGAGGCCACTTTGCTGGCCGGGGTACGCGAACTTGAACGGGCGCCCCCTGACGCTTGTAGCGCGTGCCCGCCa                                                                                                                                              >  7:205393/1‑149 (MQ=255)   gctgcccttcgggcatgtgcgcggcacgttcgctgacacccaggttctgcagctggaaaaagccggtctgggtactttgccactgcccaatcagatcgtgcggcctgggcggtGGCGCCCCCTGACGCTTGTAGCGCGTGCCCGCCAcc                                                                                                                                            >  1:91019‑M1/114‑149 (MQ=255)     ccTGCGCGACGCGCTGGTGGAAACGCGGATGACCGGCTACCTGAGCGATGGCCTGATGGCGCTGGAAGAGGCTGAGGCCACTTTGCTGGCCGGGGTACGCGAACTTGAACGGGCGCCCCCTGACGCTTGTAGCGCGTGCCCGCCACCGc                                                                                                                                          >  7:211268/1‑149 (MQ=255)               gcgcTGGTGGAAACGCGGATGACCGGCTACCTGAGCGATGGCCTGATGGCGCTGGAAGAGGCTGAGGCCACTTTGCTGGCCGGGGTACGCGAACTTGAACGGGCGCCCCCTGACGCTTGTAGCGCGTGCCCGCCACCGCCCAGGCCGCa                                                                                                                                >  5:33488/1‑149 (MQ=255)                     gtggAAACGCGGATGACCGGCTACCTGAGCGATGGCCTGATGGCGCTGGAAGAGGCTGAGGCCACTTTGCTGGCCGGGGTACGCGAACTTGAACGGGCGCCCCCTGACGCTTGTAGCGCGTGCCCGCCACCGCCCAGGCTGCACGATCt                                                                                                                          >  7:14438/1‑149 (MQ=255)                          gcacgttcgctgacacccaggttctgcagctggaaaaagccggtctgggtactttgccactgcccaatcagatcgtgcggcctgggcggtGGCGCCCCCTGACGCTTGTAGCGCGTGCCCGCCa                                                                                                                                              <  7:149290‑M1/34‑1 (MQ=255)                          gcacgttcgctgacacccaggttctgcagctggaaaaagccggtctgggtactttgccactgcccaatcagatcgtgcggcctgggcggtGGCGCCCCCTGACGCTTGTAGCGCGTGCCCGCCa                                                                                                                                              >  8:149290‑M1/91‑124 (MQ=255)                          aaCGCGGATGACCGGCTACCTGAGCGATGGCCTGATGGCGCTGGAAGAGGCTGAGGCCACTTTGCTGGCCGGGGTACGCGAACTTGAACGGGCGCCCCCTGACGCTTGTAGCGCGTGCCCGCCACCGCCCAGGCCGCACGATCTGATTg                                                                                                                     <  7:309323/149‑1 (MQ=255)                           aCGCGGATGACCGGCTACCTGAGCGATGGCCTGATGGCGCTGGAAGAGGCTGAGGCCACTTTGCTGGCCGGGGTACGCGAACTTGAACGGGCGCCCCCTGACGCTTGTAGCGCGTGCCCGCCACCGCCCAGGCCGCACGATCTGATTg                                                                                                                     <  7:345753/148‑1 (MQ=255)                            cgcgGATGACCGGCTACCTGAGCGATGGCCTGATGGCGCTGGAAGAGGCTGAGGCCACTTTGCTGGCCGGGGTACGCGAACTTGAACGGGCGCCCCCTGACGCTTGTAGCGCGTGCCCGCCACCGCCCAGGCCGCACGATCTGATTggg                                                                                                                   <  6:33488/149‑1 (MQ=255)                            cgcgGATGACCGGCTACCTGAGCGATGGCCTGATGGCGCTGGAAGAGGCTGAGGCCACTTTGCTGGCCGGGGTACGCGAACTTGAACGGGCGCCCCCTGACGCTTGTAGCGCGTGCCCGCCACCGCCCAGGCCGCACGATCTGATTggg                                                                                                                   <  1:277350/149‑1 (MQ=255)                            cgcgGATGACCGGCTACCTGAGCGATGGCCTGATGGCGCTGGAAGAGGCTGAGGCCACTTTGCTGGCCGGGGTACGCGAACTTGAACGGGCGCCCCCTGACGCTTGTAGCGCGTGCCCGCCACCGCCCAGGCCGCACGATCTGATTggg                                                                                                                   <  8:205393/149‑1 (MQ=255)                               ggATGACCGGCTACCTGAGCGATGGCCTGATGGCGCTGGAAGAGGCTGAGGCCACTTTGCTGGCCGGGGTACGCGAACTTGAACGGGCGCCCCCTGACGCTTGTAGCGCGTGCCCGCCACCGCCCAGGCCGCACGATCTGATTGGGCAg                                                                                                                >  4:368142/1‑149 (MQ=255)                               ggATGACCGGCTACCTGAGCGATGGCCTGATGGCGCTGGAAGAGGCTGAGGCCACTTTGCTGGCCGGGGTACGCGAACTTGAACGGGCGCCCCCTGACGCTTGTAGCGCGTGCCCGCCACCGCCCAGGCCGCACGATCTGACTGGGCAg                                                                                                                <  1:75148/149‑1 (MQ=255)                                  tgtccGGCTACCTGAGGGATGGCCTGTTGGCGCGGGATGATTCTGTGCCCAGTTTGATGTGCGGGGTTCGCGAATTTTTTCGGGCGCCCCCTTAGGCTTGTAGCGCGTGCGCGCCACCGGGCAGGCCGCACGATCTGATTGGGGAGTg                                                                                                              <  8:119055/145‑1 (MQ=255)                                      cGGCTACCTGAGCGATGGCCTGATGTCGCTGGAAGAGGCTGAGGCCACTTTGCTGGCGGGTGGACGCGAACTTGAACGGGCGCCGCCTGACGCTTGTAGCGCGTGCGCGCCACCGCCCAGGCCGCACGATCTGATTGGGCAGTGGCaaa                                                                                                         <  4:54066/149‑1 (MQ=255)                                      cGGCTACCTGAGCGATGGCCTGATGGCGCTGGAAGAGGCTGAGGCCACTTTGCTGGCCGGGGTACGCGAACTTGAACGGGCGCCCCCTGACGCTTGTAGCGCGTGCCCGCCACCGCCCAGGCCGCACGATCTGATTGGGCAGTGGCaaa                                                                                                         <  8:211268/149‑1 (MQ=255)                                        gCTACCTGAGCGATGGCCTGATGGCGCTGGAAGAGGCTGAGGCCACTTTGCTGGCCGGGGTACGCGAACTTGAACGGGCGCCCCCTGACGCTTGTAGCGCGTGCCCGCCACCGCCCAGGCCGCACGATCTGATTGGGCAGTGGCAAAGt                                                                                                       <  6:27989/149‑1 (MQ=255)                                             cTGAGCGATGGCCTGATGGCGCTGGAAGAGGCTGAGGCCACTTTGCTGGCCGGGGTACGCGAACTTGAACGGGCGCCCCCTGACGCTTGTAGCGCGTGCCCGCCACCGCCCAGGCCGCACGATCTGATTGGGCAGTGGCAAAGTACCCa                                                                                                  <  3:368142/149‑1 (MQ=255)                                               gAGCGATGGCCTGATGGCGCTGGAAGAGGCTGAGGCCACTTTGCTGGCCGGGGTACGCGAACTTGAACGGGCGCCCCCTGACGCTTGTAGCGCGTGCCCGCCACCGCCCAGGCCGCACGATCTGATTgg                                                                                                                    <  3:210017/129‑1 (MQ=255)                                               gAGCGATGGCCTGATGGCGCTGGAAGAGGCTGAGGCCACTTTGCTGGCCGGGGTACGCGAACTTGAACGGGCGCCCCCTGACGCTTGTAGCGCGTGCCCGCCACCGCCCAGGCCGCACGATCTGATTgg                                                                                                                    >  4:210017/1‑129 (MQ=255)                                                   gATGGACTGATGGCGCTGGAAGAGGCTGATGAAACTTTGATGGCCGTGGTACGCGAACTTGAACGGGCGCCCACTTACGCTTGTAGCGCGTGCCCGCAACCGCACAGTCAGCAAGATATGATTGGGCAGTGGCAAAGTACCCAGAcctt                                                                                            >  2:160513/1‑147 (MQ=255)                                                    aTGGCCTGATGGCGCTGGAAGAGGCTGAGGCCACTTTGCTGGCCGGGGTACGCGAACTTGAACGGGCGCCCCCTGACGCTTGTAGCGCGTGCCCGCCACCGCCCAGGCCGCACGATCTGATTGGGCAGTGGCAAAGTACCCAGACCGGc                                                                                           >  7:147130/1‑149 (MQ=255)                                                    aTGGCCTGATGGCGCTGGAAGAGGCTGAGGCCACTTTGCTGGCCGGGGTACGCGAACTTGAACGGGCGCCCCCTGACGCTTGTAGCGCGTGCCCGCCACCGCCCAGGCCGCACGATCTGATTGGGCAGTGGCAAAGTACCCAGACCGGc                                                                                           <  4:297041/149‑1 (MQ=255)                                                            agggCGCTGGAAGAGGCTGAGGCCACTTTGCTGGCCGGGGTACGCGAACTTGAACGGGCGCCCCCTGACGCTTGTAGCGCGTGCCCGCGACCGCCCAGGCCGCACGATCTGATTGGGCAGTGGCAAAGTACCCAGACCGGCTTTTTcc                                                                                    <  5:214722/146‑1 (MQ=255)                                                            aTGGCGCTGGAAGAGGCTGAGGCCACTTTGCTGGCCGGGGTACGCGAACTTGAACGGGCGCCCCCTGACGCTTGTAGCGCGTGCCCGCCACCGCCCAGGCCGCACGATCTGATTGGGCAGTGGCAAAGTACCCAGACCGGCTTTTTcc                                                                                    <  8:280102/148‑1 (MQ=255)                                                             tGGCGCTGGAAGAGGCTGAGGCCACTTTGCTGGCCGGGGTACGCGAACTTGAACGGGCGCCCCCTGACGCTTGTAGCGCGTGCCCGCCACCGCCCAGGCAGCACGATCTGATTGGGCAGTGGCAAAGTACCCAGACCGGCTTTTTCCAg                                                                                  <  8:14438/149‑1 (MQ=255)                                                                cgcTGGAAGAGGCTGAGGCCACTTTGCTGGCCGGGGTACGCGAACTTGAACGGGCGCCCCCTGACGCTTGTAGCGCGTGCCCGCCACCGCCCAGGCCGCACGATCTGATTGGGCAGTGGCAAAGTACCCAGACCGGCTTTTTCCAGCTg                                                                               <  1:271158/149‑1 (MQ=255)                                                                  cTGGAAGAGGCTGATGCCAATTTGCTGGCCTGTGTAAGCGAACTTGAACGGGCGACCCCTGACGCTTTTAGCTCGTGCCCGCCAACGAAAAGGCCGCACTATCTGATTGGGCAGTGGCAAAGTACCCAGACCTGCTTTTTCCAGCTGCa                                                                             <  1:160513/149‑1 (MQ=255)                                                                     gAAGAGGCTGAGGCCACTTTGCTGGCCGGGGTACGCGAACTTGAACGGGCGCCCCCTGACGCTTGTAGCGCGTGCCCGCCACCGCCCAGGCCGCACGATCTGATTGGGCAGTGGCAAAGTACCCAGACCGGCTTTTTCCAGCTGCAGaa                                                                          >  8:89915/1‑149 (MQ=255)                                                                                 gCCACTTTGCTGGCCGGGGTACGCGAACTTGAACGGGCGCCCCCTGACGCTTGTAGCGCGTGCCCGCCACCGCCCAGGCCGCACGATCTGATTGGGCAGTGGCAAAGTACCCAGACCGGCTTTTTCCAGCTGCAGAACCTGGGTGTCAg                                                              >  5:52586/1‑149 (MQ=255)                                                                                 gCCACTATGCTGGCCGGGGTACGAGAACTTGAACGCGCGCCCCCTGACGATTGAAGCGCGTGACCGCCACCGCCCAGGCCGCACGATCTGAGAGGGCAGTGGCAAAGTACCCAGACCGGCTAATTCCAGCTGCAGAAACTGGGTGTGAg                                                              >  4:291687/1‑149 (MQ=255)                                                                                      tttGCTGGCCGGGGTACGCGAACTTGAACGGGCGCCCCCTGACGCTTGTAGCGCGTGCCCGCCACCGCCCAGGCCGCACGATCTGATTGGGCAGTGGCAAAGTACCCAGACCGGCTTTTTCCAGCTGCAGAACCTGGGTGTCAGCGAAc                                                         >  8:288365/1‑149 (MQ=255)                                                                                             gCCGGGGTACGCGAACTTGAACGGGCGCCCCCTGACGCTTGTAGCGCGTGCCCGCCACCGCCCAGGCCGCACGATCTGATTGGGCAGTGGCAAAGTAcc                                                                                                    <  1:144190/99‑1 (MQ=255)                                                                                             gCCGGGGTACGCGAACTTGAACGGGCGCCCCCTGACGCTTGTAGCGCGTGCCCGCCACCGCCCAGGCCGCACGATCTGATTGGGCAGTGGCAAAGTAcc                                                                                                    >  2:144190/1‑99 (MQ=255)                                                                                                  ggTACGCGAACTTGAACGGGCGCCCCCTGACGCTTGTAGCGCGTGCCCGCCACCGCCCAGGCCGCACGATCTGATTGGGCAGTGGCAAAGTACCCAGACCGGCTTTTTCCAGCTGCAGAACCTGGGTGTCAGCGAACGTGCCGCGcaca                                             >  3:242417/1‑149 (MQ=255)                                                                                                       gcgAACTTGAACGGGCGCCCCCTGACGCTTGTAGCGCGTGCCCGCCACCGCCCAGGCCGCACGATCTGATTGGGCAGTGGCAAAGTACCCAGACCGGCTTTTTCCAGCTGCAGAACCTGGGTGTCAGCGAACGTGCCGCGCACATGccc                                        >  7:307581/1‑149 (MQ=255)                                                                                                       gcgAACTTGAACGGGCGCCCCCTGACGCTTGTAGCGCGTGCCCGCCACCGCCCAGGCCGCACGAGCTGATTGGGCAGTGGCAAAGTACCCAGACCGGCTTTTTCCAGCTGCAGAACCTGGGTGTCAGCGAACGTGCCGCGCCCATGccc                                        >  5:371151/1‑149 (MQ=255)                                                                                                         gAACTTGAACGGGCGCCCCCTGACGCTTGTAGCGCGTGCCCGCCACCGCCCAGGCCGCACGATCTGATTGGGCAGTGGCAAAGTACCCAGACCGGCTTTTTCCAGCTGCAGAACCTGGGTGTCAGCGAACGTGCCGCGCACATGCCCg                                       >  2:123646/1‑148 (MQ=255)                                                                                                           aCTTGAACGGGCGCCCCCTGACGCTTGTAGCGCGTGCCCGCCACCGCCCAGGCCGCACGATCTGATTGGGCAGTGGCAAAGTACCCAGACCGGCTTTTTCCAGCTGCAGAACCTGGGTGTCAGCGAACGTGCCGCGCACATGCCCGAAg                                    <  8:307581/149‑1 (MQ=255)                                                                                                             ttGAACGGGCGCCCCCTGACGCTTGTAGCGCGTGCCCGCCACCGCCCAGGCCGCACGATCTGATTGGGCAGTGGCAAAGTACCCAGACCGGCTTTTTCCAGCTGc                                                                              <  1:90071/105‑1 (MQ=255)                                                                                                             ttGAACGGGCGCCCCCTGACGCTTGTAGCGCGTGCCCGCCACCGCCCAGGCCGCACGATCTGATTGGGCAGTGGCAAAGTACCCAGACCGGCTTTTTCCAGCTGc                                                                              >  2:90071/1‑105 (MQ=255)                                                                                                                aaCGGGCGCCCCCTGACGCTTGTAGCGCGTGCCCGCCACCGCCCAGGCCGCACGATCTGATTGGGCAGTGGCAAAGTACCCAGACCGGCTTTTTCCAGCTGCAGAACCTGGGTGTCAGCGAACGTGCCGCGcac                                              >  7:157690/1‑134 (MQ=255)                                                                                                                aaCGGGCGCCCCCTGACGCTTGTAGCGCGTGCCCGCCACCGCCCAGGCCGCACGATCTGATTGGGCAGTGGCAAAGTACCCAGACCGGCTTTTTCCAGCTGCAGAACCTGGGTGTCAGCGAACGTGCCGCGcac                                              <  8:157690/134‑1 (MQ=255)                                                                                                                 ggtggcgggcacgcgctacaagcgtcagggggcgccACCGCCCAGGCCGCACGATCTGATTGGGCAGTGGCAAAGTACCCAGACCGGCTTTTTCCAGCTGCAGAACCTGGGTGTCAGCGAACGTGCCGCGCACATGCCCGAAGGGCAGc                              >  1:91019‑M2/37‑149 (MQ=255)                                                                                                                  cGGGCGCCCCCTGACGCTTGTAGCGCGTGCCCGCCACCGCCCAGGCCGCACGATCTGATTGGGCAGTGGCAAAGTACCCAGACCGGCTTTTTCCAGCTGCAGAACCTGGGTGTCAGCGAACGTGCCGCGCACATGCCCGAAGGGCAGcc                             <  8:147130/149‑1 (MQ=255)                                                                                                                   tggcgggcacgcgctacaagcgtcagggggcgccACCGCCCAGGCCGCACGATCTGATTGGGCAGTGGCAAAGTACCCAGACCGGCTTTTTCCAGCTGCAGAACCTGGGTGTCAGCGAACGTGc                                                     <  7:149290‑M2/90‑1 (MQ=255)                                                                                                                   tggcgggcacgcgctacaagcgtcagggggcgccACCGCCCAGGCCGCACGATCTGATTGGGCAGTGGCAAAGTACCCAGACCGGCTTTTTCCAGCTGCAGAACCTGGGTGTCAGCGAACGTGc                                                     >  8:149290‑M2/35‑124 (MQ=255)                                                                                                                       GCCCCCTGATGCTTGTAGCGCGGGCCCGCCACCGCCCAGGCCGCACGATCTGATTGGGCAGTGGCAAAGTACCCAGCCCGGCGTTTTCCAGCTGCAGAACCTGGGAGTCAGCGAACGTGCCGCGCACATGCCCGAAGGGCAGCCGGTTa                        >  3:291687‑M1/1‑149 (MQ=255)                                                                                                                         ccccTGACGCTTGTAGCGCGTGCCCGCCACCGCCCAGGCCGCACGATCTGATTGGGCAGTGGCAAAGTACCCAGACCGGCTTTTTCCAGCTGCAGAACCTGGGTGTCAGCGAACGTGCCGCGCACATGCCCGAAGGGCAGCCGGTTAGc                      <  7:288365/149‑1 (MQ=255)                                                                                                                          cccTGACGCTTGTAGCGCGTGCCCGCCACCGCCCAGGCCGCACGATCTGATTGGGCAGTGGCAAAGTACCCAGACCGGCTTTTTCCAGCTGCAGAACCTGGGTGTCAGCGAACGTGCCGCGCACATGCCCGAAGGGCAGCCGGTTAGcc                     >  2:55823/1‑149 (MQ=255)                                                                                                                                   ttGTAGCGCGTGCCCGCCACCGCCCAGGCCGCACGATCTGATTGGGCAGTGGCAAAGTACCCAGACCGGCTTTTTCCAGCTGCAGAACCTGGGTGTCAGCGAACGTGCCGCGCACATGCCCGAAGGGCAGCCGGTTAGCCTGTTCCGGa            >  6:59366/1‑149 (MQ=255)                                                                                                                                     gTAGCGCGTGCCCGCCACCGCCCAGGCCGCACGATCTGATTGGGCAGTGGCAAAGTACCCAGACCGGCTTTTTCCAGCTGCAGAACCTGGGTGTCAGCGAACGTGCCGCGCACATGCCCGAAGGGCAGCCGGTTAGCCTGTTCCGGa            <  7:89915/147‑1 (MQ=255)                                                                                                                                     gTAGCGCGTGCCCGCCACCGCCCAGGCCGCACGATCTGATTGGGCAGTGGCAAAGTACCCAGACCGGCTTTTTCCAGCTGCAGAACCTGGGTGTCAGCGAACGTGCCGCGCACATGCCCGAAGGGCAGCCGGTTAGCCTGTTCCGGa            <  4:242417/147‑1 (MQ=255)                                                                                                                                     gTAGCGCGTGCCCGCCACCGCCCAGGCCGCACGATCTGATTGGGCAGTGGCAAAGTACCCAGACCGGCTTTTTCCAGCTGCAGAACCTGGGTGTCAGCGAACGTGCCGCGCACATGCCCGAAGGGCAGCCGGTTAGCCTGTTCCGGAt           >  1:273070/1‑148 (MQ=255)                                                                                                                                                ccGCCACCGCCCAGGCCGCACGATCTGATTGGGCAGTGGCAAAGTACCCAGACCGGCTTTTTCCAGCTGCAGAACCTGGGTGTCAGCGAACGTGCCGCGCACATGCCCGAAGGGCAGCCGGTTAGCCTGTTCCGGATTACCGCCGt  <  7:84208/146‑1 (MQ=255)                                                                                                                                                ccGCCACCGCCCAGGCCGCACGATCTGATTGGGCAGTGGCAAAGTACCCAGACCGGCTTTTTCCAGCTGCAGAACCTGGGTGTCAGCGAACGTGCCGCGCACATGCCCGAAGGGCAGCCGGTTAGCCTGTTCCGGATTACCGCCGt  >  8:84208/1‑146 (MQ=255)                                                                                                                                                     |                                                                                                                                             CTGCCCTGCGCGACGCGCTGGTGGAAACGCGGATGACCGGCTACCTGAGCGATGGCCTGATGGCGCTGGAAGAGGCTGAGGCCACTTTGCTGGCCGGGGTACGCGAACTTGAACGGGCGCCCCCTGACGCTTGTAGCGCGTGCCCGCCACCGCCCAGGCCGCACGATCTGATTGGGCAGTGGCAAAGTACCCAGACCGGCTTTTTCCAGCTGCAGAACCTGGGTGTCAGCGAACGTGCCGCGCACATGCCCGAAGGGCAGCCGGTTAGCCTGTTCCGGATTACCGCCGT  >  NC_002947/716496‑716784

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.