New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1071578 =	55 (0.930)	4 (0.070)	3/248	NT	7.8%	coding (243/375 nt)	PP_0929	lipoprotein
	?	NC_002947	1071621 =	42 (0.740)					coding (200/375 nt)	PP_0929	lipoprotein

GCGGGCTGTTCCGCTACGGAGCATGCCGATTTTTTCCGCTGCTGCGCGAGACAGGTCGATCAGGCGGCCGCGGGTGTGCGGGCCACGGTCGTTTATGCGTACCACCACACTGCGCTGGTTGGCCATGTTGGTCACCCGCACACGTGTGCCGAAGGGCAGGCTGCGGTGGGCGGCGGTAAGGGCGTGCTGGTTGAACGGTTCGCCACTGGCGGTGCGTTTGCCATGGTGGCGCGAGCCGTAGTAGGAAGCGGTGCCCGTCTGGTCGTAGCCGCGCGGGTCGATGTCATGGC  >  NC_002947/1071473‑1071762                                                                                                                                                     |                                                                                                                                              gcgGGCTGTTCCGCTACGGAGCATGCCGATTTTTTCCGCTGCTGCGCGAGACAGGTCGATCAGGCGGCCGCGGGTGTGCGGGCCACGGTGGTTTATGCGTACCACCACACTGCGCTGGTTGGCCATGTTGGTCACCCGCACACGTGTGc                                                                                                                                               <  3:92301/149‑1 (MQ=255) gcgGGCTGTTCCGCTACGGAGCATGCCGATTTTTTCCGCTGCTGCGCGAGACAGGTCGATCAGGCGGCCGCGGGTGTGCGGGCCACGGTCGTTTATGCGTACCACCACACTGCGCTGGTTGGCCATGTTGGTCACCCGCACACGTGTGc                                                                                                                                               <  3:97595/149‑1 (MQ=255) caccgcttcctactacggctcgcgccaccatggcaaacgcaccgccagtggcgaaccgttcaaccagcacgcccttaccgccgcccaccgcagcctgcccttcggCACACTGCGCTGGTTGGCCATGTTGGTCACCCGCACACGTGTGc                                                                                                                                               >  7:30089‑M1/106‑149 (MQ=255)  cgGGCTGTTCCGCTACGGAGCATGCCGATTTTTTCCGCTGCTGCGCGAGACAGGTCGATCAGGCGGCCGCGGGTGTGCGGGCCACGGTCGTTTATGCGTACCACCACACTGCGCTGGTTGGCCATGTTGGTCACCCGCACACGTGTGcc                                                                                                                                              >  7:260621/1‑149 (MQ=255)      cTGTTTCGCTACGGAGCATGCCGATTTTTTCCGCTGCTGCGCGAGACAGGTCGATCAGGCGGCCGCGGGTGTGCGGGCCACGGTCGTTTATGCGTACCACCACACTGCGCTGGTTGGCCATGTTGGTCACCCGCACACGTGTGCCGAAg                                                                                                                                          <  4:109706/149‑1 (MQ=255)       tGTTCCGCTACGGAGCATGCCGATTTTTTCCGCTTCTGCGCGAGACAGGTCGATCAGGCGGACGCGGGTGTGCGGGCAACGGTCGTTTATGAGTAACACCACACTGCGCTGGTTGGACATGTTGGTCACCCGCACACGTGTGCCGAAgg                                                                                                                                         >  7:198410/1‑149 (MQ=255)                          ccGATTTTTTCCGCTGCTGCGCGAGACAGGTCGATCAGGCGGCCGCGGGTGTGCGGGCCACGGTCGTTTATGCGTACCACCACACTGCGCTGGTTGGCCATGTTGGTCACCCGCACACGTGTGCCGAAGGGCAGGCTGCGGTGggcgg                                                                                                                       <  2:357698/148‑1 (MQ=255)                           cGATTTTTTCCGCTGCTGCGCGAGACAGGTCGATCAGGCGGCCGCGGGTGTGCGGGCCACGGTCGTTTATGCGTACCACCACACTGCGCTGGTTGGCCATGTTGGTCACCCGCACACGTGTGCCGAAGGGCAGGCTGCGGTGGgcggcg                                                                                                                     <  8:244833/149‑1 (MQ=255)                           cGATTTTTTCCGCTGCTGCGCGAGACAGGTCGATCAGGCGGCCGCGGGGGTGCGGGCCACGGTCGTTTATGCGTACCACCACACTGCGCTGGTTGGCCATGTTGGTCACCCGCACACGTGTGCCGAAGGGCAGGCTGCGGTGGgcggcg                                                                                                                     <  3:43443/149‑1 (MQ=255)                            gATTTTTTCCGCTGCTGCGCGAGACAGGTCGATCAGGCGGCCGCGGGTGTGCGGGCCACGGTCGTTTATGCGTACCACCACACTGCGCTGGTTGGCCATGTTGGTCACCCGCACACGTGTGCCGAAGGGCAGGCTGCGGt                                                                                                                             <  5:380949/140‑1 (MQ=255)                            gATTTTTTCCGCTGCTGCGCGAGACAGGTCGATCAGGCGGCCGCGGGTGTGCGGGCCACGGTCGTTTATGCGTACCACCACACTGCGCTGGTTGGCCATGTTGGTCACCCGCACACGTGTGCCGAAGGGCAGGCTGCGGt                                                                                                                             >  6:380949/1‑140 (MQ=255)                            gATTTTTTCCGCTGCTGCGCGAGACAGGTCGATCAGGCGGCCGCGGGTGTGCGGGCCACGGTCGTTTATGCGTACCACCACACTGCGCTGGTTGGCCATGTTGGTCACCCGCACACGTGTGCCGAAGGGCAGGCTGCGGTGGGcggcgg                                                                                                                    >  1:306572/1‑149 (MQ=255)                            gATTTTTTCCGCTGCTGCGCGAGACAGGTCGATCAGGCGGCCGCGGGTGTGCGGGCCACGGTCGTTTATGCGTACCACCACACTGCGCTGGTTGGCCATGTTGGTCACCCGCACACGTGTGCCGAAGGGCAGGCTGCGGTGGGcggcgg                                                                                                                    >  7:321748/1‑149 (MQ=255)                                      gctgctGCGCGAGACAGGTCGATCAGGCGGCCGCGGGTGTGCGGGCCACGGTCGTTTATGCGTACCACCACACTGCGCTGGTTGGCCATGTTGGTCACCCGCACACGTGTGCCGAAGGGCAGGCTGCGGTGGGCGGCGGTAAGGGCGTg                                                                                                          >  7:188951/1‑149 (MQ=255)                                       ctgctgCGCGAGACAGGTCGATCAGGCGGCCGCGGGTGTGCGGGCCACGGTCGTTTATGCGTACCACCACACTGCGCTGGTTGGCCATGTTGGTCACCCGCACACGTGTGCCGAAGGGCAGGCTGCGGTGGGCGGCGGTAAGGGCGTGc                                                                                                         <  7:29103/149‑1 (MQ=255)                                       ctgctgCGCGAGACAGGTCGATCAGGCGGCCGCGGGTGTGCGGGCCACGGTCGTTTATGCGTACCACCACACTGCGCTGGTTGGCCATGTTGGTCACCCGCACACGTGTGCCGAAGGGCAGGCTGCGGTGGGCGGCGGTAAGGGCGTGc                                                                                                         >  8:140476/1‑149 (MQ=255)                                          ctgcGCGAGACAGGTCGATCAGGCGGCCGCGGGTGTGCGGGCCACGGTCGTTTATGCGTACCACCACACTGCGCTGGTTGGCCATGTTGGTCACCCGCACACGTGTGCCGAAGGGCAGGCTGCGGTGGGCGGCGGTAATGGCGTGCttg                                                                                                      <  5:65407/149‑3 (MQ=255)                                          ctgcGCGAGACAGGTCGATCAGGCGGCCGCGGGTGTGCGGGCCACGGTCGTTTATGCGTACCACCACACTGCGCTGGTTGGCCATGTTGGTCACCCGCACACGTGTGCCGAAGGGCAGGCTGCGGTGGGCGGCGGTAAGGGCGTGCTgg                                                                                                      <  3:71956/149‑1 (MQ=255)                                             cgcgAGACAGGTCGATCAGGCGGCCGCGGGTGTGCGGGCCACGGTCGTTTATGCGTACCACCACACTGCGCTGGTTGGCGATGTTGGTCACACTGACACGTGTGCTGAAGGGCAGGCTGCGGTGGGCGGCGGTAAGGGCGTGCTGGtt                                                                                                    <  5:258654/148‑1 (MQ=255)                                               cgAGACAGGTCGATCAGGCGGCCGCGGGTGTGCGGGCCACGGTCGTTTATGCGTACCACCACACTGCGCTGGTTGGCCATGTTGGTCACCCGCACACGTGTGCCGAAGGGCAGGCTGCGGTGGGCGGCGGTAAGGGCGTGCTGGTTGaa                                                                                                 >  4:168034/1‑149 (MQ=255)                                                          gATCAGGCGGCCGCGGGTGTGCGGGCCACGGTCGTTTATGCGTACCACCACACTGCGCTGGTTGGCCATGTTGGTCACCCGCACACGTGTGCCGAAGGGCAGGCTGCGGTGGGCGGCGGTAAGGGCGTGCTGGTTGAACGGTTCGCCAc                                                                                      >  7:226594/1‑149 (MQ=255)                                                          gATCAGGCGGCCGCGGGTGTGCGGGCCACGGTCGTTTATGCGTACCACCACACTGCGCTGGTTGGCCATGTTGGTCACCCGCACACGTGTGCCGAAGGGCAGGCTGCGGTGGGCGGCGGTAAGGGCGTGCTGGTTGAACGGTTCGCCAc                                                                                      >  3:102955/1‑149 (MQ=255)                                                           aTCAGGCGGCCGCGGGTGTGCGGGCCACGGTCGTTTATGCGTACCACCACACTGCGCTGGTTGGCCATGTTGGTCACCCGCACACGTGTGCCGAAGGGCAGGCTGCGGTGGGCGGCGGTAAGGGCGTGCTGGTTGAACGGTTCGCCACt                                                                                     >  3:81171/1‑149 (MQ=255)                                                              aGGCGGCCGCGGGTGTGCGGGCCACGGTCGTTTATGCGTACCACCACACTGCGCTGGTTGGCCATGTTGGTCACCCGCACACGTGTGCCGAAGGGCAGGCTGCGGTGGGCGGCGGTAAGGGCGTGCTGGTTGAACGGTTCGCCACTgg                                                                                   <  4:81171/148‑1 (MQ=255)                                                                gcggcCGCGGGTGTGCGGGCCACGGTCGTTTATGCGTACCACCACACTGCGCTGGTTGGCCATGTTGGTCACCCGCACACGTGTGCCGAAGGGCAGGCTGCGGTGGGCGGCGGTAAGGGCGTGCTGGTTGAACGGTTCGCCACTGGCgg                                                                                >  1:17586/1‑149 (MQ=255)                                                                gcggcCGCGGGTGTGCGGGCCACGGTCGTTTATGCGTACCACCACACTGCGCTGGTTGGCCATGTTGGTCACCCGCACACGTGTGCCGAAGGGCAGGCTGCGGTGGGCGGCGGTAAGGGCGTGCTGGTTGAACGGTTCGCCACTGGCgg                                                                                >  4:152753/1‑149 (MQ=255)                                                                   gcCGCGGGTGTGCGGGCCACGGTCGTTTATGCGTACCACCACACTGCGCTGGTTGGCCATGTTGGTCACCCGCACACGTGTGCCGAAGGGCAGGCTGCGGTGGGCGGCGGTAAGGGCGTGCTGGTTGAACGGTTCGCCACTGGCGGTGc                                                                             <  3:168034/149‑1 (MQ=255)                                                                     cgcgGGTGTGCGGGCCACGGTCGTTTATGCGTACCACCACACTGCGCTGGTTGGCCATGTTGGTCACCCGCACACGTGTGCCGAAGGGCAGGCTGCGGTGGGCGGCGGTAAGGGCGTGCTGGTTGAACGGTTCGCCACTGGCGGTGCGt                                                                           >  2:12656/1‑149 (MQ=255)                                                                       cgGGTGTGCGGGCCACGGTCGTTTATGCGTACCACCACACTGCGCTGGTTGGCCATGTTGGTCACCCGCACACGTGTGCCGAAGGGCAGGCTGCGGTGGGCGGCGGTAAGGGCGTGCTGGTTGAACGGTTCGCCACTGGCGGTGCGttt                                                                         <  7:140476/149‑1 (MQ=255)                                                                            gtgCGGGCCACGGTCGTTTATGCGTACCACCACACTGCGCTGGTTGGCCATGTTGGTCACCCGCACACGTGTGCCGAAGGGCAGGCTGCGGTGGGCGGCGGTAAGGGCGTGCTGGTTGAACGGTTCGCCAc                                                                                      >  4:67259/1‑131 (MQ=255)                                                                            gtgCGGGCCACGGTCGTTTATGCGTACCACCACACTGCGCTGGTTGGCCATGTTGGTCACCCGCACACGTGTGCCGAAGGGCAGGCTGCGGTGGGCGGCGGTAAGGGCGTGCTGGTTGAACGGTTCGCCAc                                                                                      <  3:67259/131‑1 (MQ=255)                                                                                     aCGGTCGTTTATGCGTACCACCACACTGCGCTGGTTGGCCATGTTGGTCACCCGCACACGTGTGCCGAAGGGCAGGCTGCGGTGGGCGGCGGTAAGGGCGTGCTGGTTGAACGGTTCGCCACTGGCGGTGCGTTTGCCATGGTGgcgc                                                            >  1:320507/1‑148 (MQ=255)                                                                                      cGGTCGTTTATGCGTACCACCACACTGCGCTGGTTGGCCATGTTGGTCACCCGCACACGTGTGCCGAAGGGCAGGCTGCGGTGGGCGGCGGTAAGGGCGTGCTGGTTGAACGGTTCGCCACTGGCGGTGCGTTTGCCATGGTGGCGCGa                                                          <  8:321748/149‑1 (MQ=255)                                                                                           gTTTATGCGTACCACCACACTGCGCTGGTTGGCCATGTTGGTCACCCGCACACGTGTGCCGAAGGGCAGGCTGCGGTGGGCGGCGGTAAGGGCGTGCTGGTTGAACGGTTCGCCACTGGCGGTGCGTTTGCCATGGTGGCGCGAGCCg                                                      >  4:290545/1‑148 (MQ=255)                                                                                                   gTACCACCACACTGCGCTGGTTGGCCATGTTGGTCACCCGCACACGTGTGCCGAAGGGCAGGCTGCGGTGGGTGGCGGTAAGGGCGAGCTGGTTGAACGGTTCGCCACTGGCGGTGc                                                                             <  1:33476/117‑1 (MQ=255)                                                                                                   gTACCACCACACTGCGCTGGTTGGCCATGTTGGTCACCCGCACACGTGTGCCGAAGGGCAGGCTGCGGTGGGAGGCGGTAAGGGCGTGCTGGTTGAACGGTTCGCCACTGGCGGTGc                                                                             >  2:33476/1‑117 (MQ=255)                                                                                                       caccacACTGCGCTGGTTGGCCATGTTGGTCACCCGCACACGTGTGCCGAAGGGCAGGCTGCGGTGGGCGGCGGTAAGGGCGTGCTGGTTGAACGGTTCGCCACTGGCGGTGCGTTTGCCATGGTGGCGCGAGCCGTAGTAGGAAGCgg                                         >  7:155277/1‑149 (MQ=255)                                                                                                       caccacACTGCGCTGGTTGGCCATGTTGGTCACCCGCACACGTGTGCCGAAGGGCAGGCTGCGGTGGGCGGCGGTAAGGGCGTGCTGGTTGAACGGTTCGCCACTGGCGGTGCGTTTGCCATGGTGGCGCGAGCCGTAGTAGGAAGCgg                                         >  3:273562/1‑149 (MQ=255)                                                                                                         gcacacgtgtgcgggtgaccaacatggccaaccagcgcagtgtgCCGAAGGGCAGGCTGCGGTGGGCGGCGGTAAGGGCGTGCTGGTTGAACGGTTCGCCACTGGCGGTGCGTTTGCCATGGTGGCGCGAGCCGTAGTAGGAAGCGGTg                                       >  7:30089‑M2/45‑149 (MQ=255)                                                                                                          cacacgtgtgcgggtgaccaacatggccaaccagcgcagtgtgCCGAAGGGCAGGCTGCGGTGGGCGGCGGTAAGGGCGTGCTGGTTGAACGGTTCGCCACTGGCGGTGCGTTTGCCATGGTGGCGCGAGCCGTAGTAGGAAGCGGTGc                                      >  4:6993‑M2/44‑149 (MQ=255)                                                                                                          cacacgtgtgcgggtgaccaacatggccaaccagcgcagtgtgCCGAAGGGCAGGCTGCGGTGGGCGGCGGTAAGGGCGTGCTGGTTGAACGGTTCGCCACTGGCGGTGCGTTTGCCATGGTGGCGCGAGCCGTAGTAGGAAGCGGTGc                                      >  4:1719‑M2/44‑149 (MQ=255)                                                                                                            CACTGCGCTGGTTGGCCATGTTGGTCACCCGCACACGTGTGCCGAAGGGCAGGCTGCGGTGGGCGGCGGTAAGGGCGTGCTGGTTGAACGGTTCGCCACTGGCGGTGCGTTTGCCATGGTGGCGCGAGCCGTAGTAGGAAGCGGTGccc                                    >  2:306572‑M1/1‑149 (MQ=255)                                                                                                                  tgcgggtgaccaacatggccaaccagcgcagtgtgCCGAAGGGCAGGCTGCGGTGGGCGGCGGTAAGGGCGTGCTGGTTGAACGGTTCGCCACTGGCGGTGCGTTTGCCATGGTGGCGCGAGCCGTAGTAGGAAGCGGTGCCCGTCTgg                              <  8:30089‑M2/114‑1 (MQ=255)                                                                                                                            cATGTTGGTCACCCGCACACGTGTGCCGAAGGGCAGGCTGCGGTGGGCGGCGGTAAGGGCGTGCTGGTTGAACGGTTCGCCACTGGCGGTGCGTTTGCCATGGTGGCGCGAGCCGTAGTAGGAAGCGGTGCCCGTCTGGTCGTAGCcgc                    >  6:21166/1‑149 (MQ=255)                                                                                                                             aTGTTGGTCACCCGCACACGTGTGCCGAAGGGCAGGCTGCGGTGGGCGGCGGTAAGGGCGTGCTGGTTGAACGGTTCGCCACTGGCGGTGCGTTTGCCATGGTGGCGCGAGCCGTAGTAGGAAGCGGTGCCCGTCTGGTCGTAGCcgcg                   >  3:233754/1‑149 (MQ=255)                                                                                                                                   gTCACCCGCACACGTGTGCCGAAGGGCAGGCTGCGGTGGGCGGCGGTAAGGGCGTGCTGGTTGAACGGTTCGCCACTGGCGGTGCGTTTGCCATGGTGGCGCGAGCCGTAGTAGGAAGCGGTGCCCGTCTGGTCGTAGCCGCGCGGGt              <  2:320507/148‑1 (MQ=255)                                                                                                                                   gTCACCCGCACACGTGTGCCGAAGGGCAGGCTGCGGTGGGCGGCGGTAAGGGCGTGCTGGTTCAACGGTTCGCCACTGGCGGTGCGTTTGCCATGGTGGCGCGAGCCGTAGTAGGAAGCGGTGCCCGTCTGGTCGTAGCCGCGCGGGTc             >  1:43049/1‑149 (MQ=255)                                                                                                                                    tCACCCGCACACGTGTGCCGAAGGGCAGGCTGCGGTGGGCGGCGGTAAGGGCGTGCTGGTTGAACGGTTCGCCACTGGCGGTGCGTTTGCCATGGTGGCGCGAGCCGTAGTAGGAAGCGGTGCCCGTc                                 >  3:242055/1‑128 (MQ=255)                                                                                                                                    tCACCCGCACACGTGTGCCGAAGGGCAGGCTGCGGTGGGCGGCGGTAAGGGCGTGCTGGTTGAACGGTTCGCCACTGGCGGTGCGTTTGCCATGGTGGCGCGAGCCGTAGTAGGAAGCGGTGCCCGTc                                 <  4:242055/128‑1 (MQ=255)                                                                                                                                      aCCCGCACACGTGTGCCGAAGGGCAGGCTGCGGTGGGCGGCGGTAAGGGCGTGCTGGTTGAACGGTTCGCCACTGGCGGTGCGTTTGCCATGGTTGCGCGAGCCGTAGTAGGAAGCGGTGCCCGTCTGGTCGTAGCCGCGCGGGTCGAt          <  4:102955/149‑1 (MQ=255)                                                                                                                                      aCCCGCACACGTGTGCCGAAGGGCAGGCTGCGGTGGGCGGCGGTAAGGGCGTGCTGGTTGAACGGTTCGCCACTGGCGGTGCGTTTGCCATGGTGGCGCGAGCCGTAGTAGGAAGCGGTGCCCGTCTGGTCGTAGCCGCGCGGGTCGAt          <  8:226594/149‑1 (MQ=255)                                                                                                                                            acacGTGTGCCGAAGGGCAGGCTGCGGTGGGCGGCGGTAAGGGCGTGCTGGTTGAACGGTTCGCCACTGGCGGTGCGTTTGCCATGGTGGCGCGAGCCGTAGTAGGAAGCGGTGCCCGTCTGGTCGTAGCCGCGCGGGTCGATGTCAtg    <  3:152753/149‑1 (MQ=255)                                                                                                                                            acacGTGTGCCGAAGGGCAGGCTGCGGTGGGCGGCGGTAAGGGCGTGCTGGTTCAACGGTTCGCCACTGGCGGTGCGTTTGCCATGGTGGCGCGAGCCGTAGTAGGAAGCGGTGCCCGTCTGGTCGTAGCCGCGCGGGTCGATGTCAtg    <  2:43049/149‑1 (MQ=255)                                                                                                                                              acGTGTGCCGAAGGGCAGGCTGCGGTGGGCGGCGGTAAGGGCGTGCTGGTTGAACGGTTCGCCACTGGCGGTGCGTTTGCCATGGTGGCGCGAGCCGTAGTAGGAAGCGGTGCCCGTCTGGTCGTAGCCGCGCGGGTCGATGTCAtggc  >  8:270131/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                              GCGGGCTGTTCCGCTACGGAGCATGCCGATTTTTTCCGCTGCTGCGCGAGACAGGTCGATCAGGCGGCCGCGGGTGTGCGGGCCACGGTCGTTTATGCGTACCACCACACTGCGCTGGTTGGCCATGTTGGTCACCCGCACACGTGTGCCGAAGGGCAGGCTGCGGTGGGCGGCGGTAAGGGCGTGCTGGTTGAACGGTTCGCCACTGGCGGTGCGTTTGCCATGGTGGCGCGAGCCGTAGTAGGAAGCGGTGCCCGTCTGGTCGTAGCCGCGCGGGTCGATGTCATGGC  >  NC_002947/1071473‑1071762

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.