New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2986914	25 (0.420)	3 (0.050)	3/242	NT	12.1%	coding (1485/2991 nt)	PP_2612	membrane protein
	?	NC_002947	4109619 =	20 (0.360)					coding (1441/2991 nt)	PP_3616	membrane protein

CCGACACCCGGCACAGAAGATCATGACCGGCGTTTCAAACGCCTGGAGCAATGGCTGGACCAGCACGACAGCCCGCTTTACACCGCCTTGGCGCCGTTCAACCCGTTCAAGGACAAAGCCGATTCGATCGGCACCTTGTTCGGCGCCAGCGACAACGTGATCGAAGGGCTGGCCGGTCGCTTCCCGGCCATGGCGGACATCACCGACCTCACCGCCCAGTCGGTCAATGCCGTGGTGCTCAAGCG  >  NC_002947/4109523‑4109767                                                                                                 |                                                                                                                                                     accacggtattgaccgactgggcggtgaggtcggtgatatccgccatggccgggaagcgaccggcgagcccttcgatcacgttgtcgctggcgccgTTCAACCCGTTCAAGGACAAAGCCGATTCGATCGGCACCTTGTTCGGCGCCAg                                                                                                  <  5:271839‑M2/53‑1 (MQ=255)   cacggtattgaccgactgggcggtgaggtcggtgatatccgccatggccgggaagcgaccggcgagcccttcgatcacgttgtcgctggcgccgTTCAACCCGTTCAAGGACAAAGCCGATTCGATCGGCACCTTGTTCGGCGCCa                                                                                                   <  8:318570‑M2/52‑1 (MQ=255)   cacggtattgaccgactgggcggtgaggtcggtgatatccgccatggccgggaagcgaccggcgagcccttcgatcacgttgtcgctggcgccgTTCAACCCGTTCAAGGACAAAGCCGATTCGATCGGCACCTTGTTCGGCGCCa                                                                                                   >  7:318570‑M2/95‑146 (MQ=255)                        tGACCGGCGTTTCAAACGCCTGGAGCAATGGCTGGACCAGCACGACAGCCCGCTTTACACCGCCTTGGCGCCGTTCAACCCGTTCAAGGACAAAGCCGATTCGATCGGCACCTTGTTCGGCGCCAGCGACAACGTGATCGAAGGGCTgg                                                                           >  1:315519/1‑149 (MQ=31)                                 tttCAAACGCCTGGAGCAATGGCTGGACCAGCACGACAGCCCGCTTTACACCGCCTTGGCGCCGTTCAACCCGTTCAAGGACAAAGCCGATTCGATCGGCACCTTGTTCGGCGCCAGCGACAACGTGATCGAAGGGCTGGCCGGTCGCt                                                                  >  4:107574/1‑149 (MQ=32)                                 tttCAAACGCCTGGAGCAATGGCTGGACCAGCACGACAGCCCGCTTTACACCGCCTTGGCGCCGTTCAACCCGTTCAAGGACAAAGCCGATTCGATCGGCACCTTGTTCGGCGCCAGCGACAACGTGATCGAAGGGCTGGCCGGTCGCt                                                                  >  7:269885/1‑149 (MQ=32)                                     aaaCGCCTGGAGCAATGGCT‑GACCAGCACGACAGCCCGCTTTACACCGCCTTGGCGCCGTTCAACCCGTTCAAGGACAAAGCCGATTCGATCGGCACCTTGTTCGGCGCCAACGACAACGTGATCGAAGCGCTGTCCGGAAGCTTCCCg                                                             >  8:69699/1‑149 (MQ=11)                                            tGGAGCAATGGCTGGACCAGCACGACAGCCCGCTTTACACCGCCTTGGCGCCGTTCAACCCGTTCAAGGACAAAGCCGATTCGATCGGCACCTTGTTCGGCGCCAGCGACAACGTGATCGAAGGGCTGGCCGGTCGCTTCCCGGCCATg                                                       >  8:181063/1‑149 (MQ=32)                                                gCAATGGCTGGACCAGCACGACAGCCCGCTTTACACCGCCTTGGCGCCGTTCAACCCGTTCAAGGACAAAGCCGATTCGATCGGCACCTTGTTCGGCGCCAGCGACAACGTGATCGAAGGGCTGGCCGGTCGCTTCCCGGCCATGGCgg                                                   <  5:375625/149‑1 (MQ=32)                                                 cAATGGCTGGACCAGCACGACAGCCCGCTTTACACCGCCTTGGCGCCGTTCAACCCGTTCAAGGACAAAGCCGATTCGATCGGCAACTTGTTCGACGCCAGCGACAACGTGATCGAAGGGCAGGCCGGACGATTCCCGGCCATGGCgg                                                   >  2:327145/1‑148 (MQ=11)                                                       cTGGACCAGCACGACAGCCCGCTTTACACCGCCTTGGCGCCGTTCAACCCGTTCAAGGACAAAGCCGATTCGATCGGCACCTTGTTCGGCGCCAGCGACAACGTGATCGAAGGGCTGGCCGGTCGCTTCCCGGCCATGGCGGACATCAc                                            >  5:199250/1‑149 (MQ=34)                                                            ccAGCACGACAGCCCGCTTTACACCGCCTTGGCGCCGTTCAACCCGTTCAAGGACAAAGCCGATTCGATCGGCACCTTGTTCGGCGCCAGCGACAACGTGATCGAAGGGCTGGCCGGTCGCTTCCCGGCCATGGCGGACATCACCGAcc                                       >  3:291718/1‑149 (MQ=34)                                                            ccAGCACGACAGCCCGCTTTACACCGCCTTGGCGCCGTTCAACCCGTTCAAGGACAAAGCCGATTCGATCGGCACCTTGTTCGGCGCCAGCGACAACGTGATCGAAGGGCTGGCCGGTCGCTTCCCGGCCATGGCGGACATCACCGAc                                        >  8:83637/1‑148 (MQ=34)                                                                      aGCCCGCTTTACACCGCCTTGGCGCCGTTCAACCCGTTCAAGGACAAAGCCGATTCGATCGGCACCTTGTTCGGCGCCAGCGACAACGTGATCGAAGGGCTGGCCGGTCGCTTCCCGGCCATGGCGGACATCACCGAc                                        >  5:377854/1‑138 (MQ=34)                                                                      aGCCCGCTTTACACCGCCTTGGCGCCGTTCAACCCGTTCAAGGACAAAGCCGATTCGATCGGCACCTTGTTCGGCGCCAGCGACAACGTGATCGAAGGGCTGGCCGGTCGCTTCCCGGCCATGGCGGACATCACCGAc                                        <  6:377854/138‑1 (MQ=34)                                                                        cccGCTTTACACCGCCTTGGCGCCGTTCAACCCGTTCAAGGACAAAGCCGATTCGATCGGCACCTTGTTCGGCGCCAGCGACAACGTGATCGAAGGGCTGGCCGGTCGCTTCCCGGCCATGGCGGACATCAcc                                           >  6:163114/1‑133 (MQ=34)                                                                        cccGCTTTACACCGCCTTGGCGCCGTTCAACCCGTTCAAGGACAAAGCCGATTCGATCGGCACCTTGTTCGGCGCCAGCGACAACGTGATCGAAGGGCTGGCCGGTCGCTTCCCGGCCATGGCGGACATCAcc                                           <  5:163114/133‑1 (MQ=34)                                                                        cccGCTTTACACCGCCTTGGCGCCGTTCAACCCGTTCAAGGACAAAGCCGATTCGATCGGCACCTTGTTCGGCGCCAGCGACAACGTGATCGAAGGGCTGGCCGGTCGCTTCCCGGCCATGGCGGACATCACCGACCTCACCGCCCAGt                           <  7:83637/149‑1 (MQ=34)                                                                        cccGCTTTACACCGCCTTGGCGCCGTTCAACCCGTTCAAGGACAAAGCCGATTCGATCGGCACCTTGTTCGGCGCCAGCGACAACGTGATCGAAGGGCTGGCCGGTCGCTTCCCGGCCATGGCGGACATCACCGACCTCACCGCCCAGt                           >  8:45810/1‑149 (MQ=34)                                                                           gCTTTACACCGCCTTGGCGCCGTTCAACCCGTTCAAGGACAAAGCCGATTCGATCGGCACCTTGTTCGGCGCCAGCGACAACGTGATCGAAGGGCTGGCCGGTCGCTTCCCGGCCATGGCGGACATCACCGACCTCACCGcc                               >  7:211595/1‑142 (MQ=34)                                                                           gCTTTACACCGCCTTGGCGCCGTTCAACCCGTTCAAGGACAAAGCCGATTCGATCGGCACCTTGTTCGGCGCCAGCGACAACGTGATCGAAGGGCTGGCCGGTCGCTTCCCGGCCATGGCGGACATCACCGACCTCACCGcc                               <  8:211595/142‑1 (MQ=34)                                                                                acacCGCCTTGGCGCCGTTCAACCCGTTCAAGGACAAAGCCGATTCGATCGGCACCTTGTTCGGCGCCAGCGACAACGTGATCGAAGGGCTGGCCGGTCGCTTCCCGGCCATGGCGGACATCACCGACCTCACCGCCCAGTCGGTCaa                    <  3:107574/148‑1 (MQ=34)                                                                                 cacCGCCTTGGCGCCGTTCAACCCGTTCAAGGACAAAGCCGATTCGATCGGCACCTTGTTCGGCGCCAGCGCCAACGTGATCGAAGGGCTGGCCGGTCGCTTCCCGGCCATGGCGGACATCACCGACCTCACCGCCCAGTCGGTCAATg                  >  3:354620/1‑149 (MQ=25)                                                                                      ccTTGGCGCCGTTCAACCCGTTCAAGGACAAAGCCGATTCGATCGGCACCTTGTTCGGCGCCAGCGACAACGTGATCGAAGGGCTGGCCGGTCGCTTCCCGGCCATGGCGGACATCACCGACCTCACCGCCCAGTCGGTCAATGCCgtg             <  8:269885/149‑1 (MQ=37)                                                                                      ccTTGGCGCCGTTCAACCCGTTCAAGGACAAAGCCGATTCGATCGGCACCTTGTTCGGCGCCAGCGACAACGTGATCGAAGGGCTGGCCGGTCGCTTCCCGGCCATGGCGGACATCACCGACCTCACCGCCCAGTCGGTCAATGCAgtg             >  1:139800/1‑149 (MQ=37)                                                                                        ttGGCGCCGTTCAACCCGTTCAAGGACAAAGCCGATTCGATCGGCACCTTGTTCGGCGCCAGCGACAACGTGATCGAAGGGCTGGCCGGTCGCTTCCCGGCCATGGCGGACATCACCGACCTCACCGCCCAGTCGGTCAATGCCgtggt           >  4:96827/1‑149 (MQ=37)                                                                                        ttGGCGCCGTTCAACCCGTTCAAGGACAAAGCCGATTCGATCGGCACCTTGTTCGGCGCCAGCGACAACGTGATCGAAGGGCTGGCCGGTCGCTTCCCGGCCATGGCGGACATCACCGACCTCACCGCCCAGTCGGTCAATGCCgtggt           >  2:152008/1‑149 (MQ=37)                                                                                          ggcgccgTTCAACCCGTTCAAGGACAAAGCCGATTCGATCGGCACCTTGTTCGGCGCCAGCGACAACGTGATCGAAGGGCTGGCCGGTCGCTTCCCGGCCATGGCGGACATCACCGACCTCACCGCCCAGTCGGTCAATGCCgtggtg          <  1:204773‑M2/141‑1 (MQ=255)                                                                                                 ttCAACCCGTTCAAGGACAAAGCCGATTCTATCGGCACCTTGTTCGGCGCCAGCGACAACGTGATCGAAGGGCTGGCCGGTCGCTTCCCGGCCATGGCGGACATCACCGACCTCACCGCCCAGTCGGTCAATGCAGTGGTGCTCAAgcg  >  6:351925/1‑149 (MQ=255)                                                                                                 |                                                                                                                                                     CCGACACCCGGCACAGAAGATCATGACCGGCGTTTCAAACGCCTGGAGCAATGGCTGGACCAGCACGACAGCCCGCTTTACACCGCCTTGGCGCCGTTCAACCCGTTCAAGGACAAAGCCGATTCGATCGGCACCTTGTTCGGCGCCAGCGACAACGTGATCGAAGGGCTGGCCGGTCGCTTCCCGGCCATGGCGGACATCACCGACCTCACCGCCCAGTCGGTCAATGCCGTGGTGCTCAAGCG  >  NC_002947/4109523‑4109767

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.