New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3616748 =	45 (0.760)	3 (0.050)	3/244	NT	6.8%	coding (1083/1266 nt)	codB	cytosine transporter
	?	NC_002947	3616788 =	40 (0.720)					coding (1123/1266 nt)	codB	cytosine transporter

CTGATCCCGTTCCTGGTGCTGCTGGGGTCGATCATTCCGCCGGTGGGTGGGGTGATCATGGCTGACTTCTGGTATCGCCACCGCGGCAAATACCCGCCACTGTGTACGGCAA‑ACCTGCCTCGCTACAACCTCACCGGGCTGTTTGCCTATGCCGTGGGCGCTGTACTGGCCTATGCCTCACCGTGGGTCGCGCCGCTGGTGGGCATCGCCGCCTCGGCAGTGTGCTACATCGTCATTCTGGAGCTGGGCGCACGCCGCCGCGCGCCGGGCCAGGCGGGCGTCGAGCCGTGAGCCTG  >  NC_002947/3616641‑3616936                                                                                                                                                     |                                                                                                                                                     cgtgcgcccagctccagaatgacgatgtagcacactgccgaggcggcgatgcccaccagcggcgcgacccacggtgaggcataggccagtacagcgcccacggcataGGCAA‑ACCTGCCTCGCTACAACCTCACCGGGCTGTTTGCCTa                                                                                                                                                     >  7:42857‑M1/108‑149 (MQ=255)  tGATCCCGTTCCTGGTGCTGCTGGGGTCGATCATTCCGCCGGTGGGTGGGGTGATCATGGCTGACTTCTGGTATCGCCACCGCGGCAAATACCCGCCACTGTGTACGGCAA‑ACCTGCCTCGCTACAACCTCACCGGGCTGTTTGCCTAt                                                                                                                                                    >  5:99013/1‑149 (MQ=255)  gtgcgcccagctccagaatgacgatgtagcacactgccgaggcggcgatgcccaccagcggcgcgacccacggtgaggcataggccagtacagcgcccacggcataGGCAA‑ACCTGCCTCGCTACAACCTCACCGGGCTGTTTGCCTAt                                                                                                                                                    >  5:165144‑M1/107‑149 (MQ=255)    aTCCCGTTCCTGGTGCTGCTGGGGTCGATCATTCCGCCGGTGGGTGGGGTGATCATGGCTGACTTCTGGTATCGCCACCGCGGCAAATACCCGCCACTGTGTACGGCAA‑ACCTGCCTCGCTACAACCTCACCGGGCTGTTTGCCTAt                                                                                                                                                    <  6:218631/147‑1 (MQ=255)         gTTCCTGGTGCTGCTGGGGTCGATCATTCCGCCGGTGGGTGGGGTGATCATGGCTGACTTCTGGTATCGCCACCGCGGCAAATACCCGCCACTGTGTACGGCAA‑ACCTGCCTCGCTACAACCTCACCGGGCTGTTTGCCTATGCCGTgg                                                                                                                                             <  6:99013/149‑1 (MQ=255)                              gATCATTCCGCCGGTGGGTGGGGTGATCATGGCTGACTTCTGGTATCGCCACCGCGGCAAATACCCGCCACTGTGTACGGCAA‑ACCTGCCTCGCTACAACCTCACCGGGCTGTTTGCCTATGCCGTGGGCGCTGTACTGGCCTATGCCt                                                                                                                        >  7:147223/1‑149 (MQ=255)                                   ttCCGCCGGTGGGTGGGGTGATCATGGCTCACTTCAGGTATCGCCACCTCGGCAAATACCCGCCACTGTGTACGTCAA‑ACCTGCCTCGCTACAACCTCACCGGGCAGTTTGCCTATGCCGTGCGCGCTGTACTGGCCTATGCCAAACCg                                                                                                                   >  3:287975/1‑149 (MQ=255)                                      cgccgGTGGGTGGGGTGATCATGGCTGACTTCTGGTATCGCCACCGCGGCAAATACCCGCCACTGTGTACGGCAA‑ACCTGCCTCGCTACAACCTCACCGGGCTGTTTGCCTATGCCGTGGGCGCTGTACTGGCCTATGCCTCACCGTgg                                                                                                                >  5:217844/1‑149 (MQ=255)                                       gccgGTGGGTGGGGTGATCATGGCTGACTTCTGGTATCGCCACCGCGGCAAATACCCGCCACTGTGTACGGCAA‑ACCTGCCTCGCTACAACCTCACCGGGCTGTTTGCCTATGCCGTGGGCGCTGTACTGGCCTATGCCTCACCGTggg                                                                                                               >  8:181006/1‑149 (MQ=255)                                           gtgggtggGGTGATCATGGCTGACTTCTGGTATCGCCACCGCGGCAAATACCCGCCACTGTGTACGGCAA‑ACCTGCCTCGCTACAACCTCACCGGGCTGTTTGCCTATGCCGTGGGCGCTGTACTGGCCTATGc                                                                                                                          <  7:326667/134‑1 (MQ=255)                                           gtgggtggGGTGATCATGGCTGACTTCTGGTATCGCCACCGCGGCAAATACCCGCCACTGTGTACGGCAA‑ACCTGCCTCGCTACAACCTCACCGGGCTGTTTGCCTATGCCGTGGGCGCTGTACTGGCCTATGc                                                                                                                          >  8:326667/1‑134 (MQ=255)                                           gtgggtggGGTGATCATGGCTGACTTCTGGTATCGCCACCGCGGCAAATACCCGCCACTGTGTACGGCAA‑ACCTGCCTCGCTACAACCTCACCGGGCTGTTTGCCTATGCCGTGGGCGCTGTACTGGCCTATGCCTCACCGTGGGTcgc                                                                                                           <  7:13577/149‑1 (MQ=255)                                                        tCATGGCTGACTTCTGGTATCGCCACCGCGGCAAATACCCGCCACTGTGTACGGCAA‑ACCTGCCTCGCTACAACCTCACCGGGCTGTTTGCCTATGCCGTGGGCGCTGTACTGGCCTATGCCTCACCGTGGGTCGCGCCGCTGGTggg                                                                                               >  1:169887/1‑148 (MQ=255)                                                            ggCTGACTTCTGGTATCGCCACCGCGGCAAATACCCGCCACTGTGTACGGCAA‑ACCTGCCTCGCTACAACCTCACCGGGCTGTTTGCCTATGCCGTGGGCGCTGTACTGGCCTATGCCTCACCGTGGGTCGCGCCGCTGGTGGGCATcg                                                                                          >  3:204455/1‑149 (MQ=255)                                                                   ttCTGGTATCGCCACCGCGGCAAATACCCGCCACTGTGTACGGCAA‑ACCTGCCTCGCTACAACCTCACCGGGCTGTTTGCCTATGCCGTGGGCGCTGTACTGGCCTATGCCTCACCGTGGGTCGCGCCGCTGGTGGGCATCGCCGCCTc                                                                                   >  6:130862/1‑149 (MQ=255)                                                                   ttCTGGTAACGCCACCGCGGCAAATACCCGCCACTGTGTACGGCAA‑ACCTGCCTCGCTACAACCTCACCGGGCTGTTTGCCTATGCCGTGGGCGCTGTACTGGCCTATGCCTCACCGTGGGTCGCGCCCCTGGTGGGCATCGCCGCCTc                                                                                   >  1:42087/1‑149 (MQ=255)                                                                      tGGTATCGCCACCGCGGCAAATACCCGCCACTGTGTACGGCAA‑ACCTGCCTCGCTACAACCTCACCGGGCTGTTTGCCTATGCCGTGGGCGCTGTACTGGCCTATGCCTCACCGTGGGTCGCGCCGCTGGTGGGCATCGCCGCCTCgg                                                                                 >  3:284087/1‑148 (MQ=255)                                                                          aTCGCCACCGCGGCAAATACCCGCCACTGTGTACGGCAA‑ACCTGCCTCGCTACAACCTCACCGGGCTGTTTGCCTATGCCGTGGGCGCTGTACTGGCCTATGCCTCACCGTGGGTCGCGCCGCTGGTGGGCATCGCCGCCTCGGCAgtg                                                                            >  5:374293/1‑149 (MQ=255)                                                                            cGCCACCGCGGCAAATACCCGCCACTGTGTACGGCAA‑ACCTGCCTCGCTACAACCTCACCGGGCTGTTTGCCTATGCCGTGGGCGCTGTACTGGCCTATGCCTCACCGTGGGTCGCGCCGCTGGTGGGCATCGCCGCCTCGGCAgtgt                                                                           <  2:42087/148‑1 (MQ=255)                                                                             gCCACCGCGGCAAATACCCGCCACTGTGTACGGCAA‑ACCTGCCTCGCTACAACCTCACCGGGCTGTTTGCCTATGCCGTGGGCGCTGTACTGGCCTATGCCTCACCGTGGGTCGCGCCGCTGGTGGGCATCGCCGCCTCGGCAGtgtg                                                                          <  8:147223/148‑1 (MQ=255)                                                                              ccACCGCGGCAAATACCCGCCACTGTGTACGGCAATACCTGCCTCGCTACACCCTCACCGGGCTGTTTGCCTATGCCGTGGGCGCTGTACTGGCCTATGCCTCACCGTGGGTCGCGCCGCTGGTGGGCATCGCCGCCTCGGCAGTGTGc                                                                         >  1:242517/1‑149 (MQ=255)                                                                               cACCGCGGCAAATACCCGCCACTGTGTACGGCAA‑ACCTGCCTCGCTACAACCTCACCGGGCTGTTTGCCTATGCCGTGGGCGCTGTACTGGCCTATGCCTCACCGTGGGTCGCGCCGCTGGTGGGCATCGCCGCCTCGGCAGTGTGCTa                                                                       <  6:217844/149‑1 (MQ=255)                                                                               cACCGCGGCAAATACCCGCCACTGTGTACGGCAA‑ACCTGCCTCGCTACAACCTCACCGGGCTGTTTGCCTATGCCGTGGGCGCTGTACTGGCCTATGCCTCACCGTGGGTCGCGCCGCTGGTGGGCATCGCCGCCTCGGCAGTGTGCTa                                                                       <  5:292243/149‑1 (MQ=255)                                                                                aCCGCGGCAAATACCCGCCACTGTGTACGGCAA‑ACCTGCCTCGCTACAACCTCACCGGGCTGTTTGCCTATGCCGTGGGCGCTGTACTGGCCTATGCCTCACCGTGGGTCGCGCCGCTGGTGGGCATcgcc                                                                                        <  6:182938/131‑1 (MQ=255)                                                                                aCCGCGGCAAATACCCGCCACTGTGTACGGCAA‑ACCTGCCTCGCTACAACCTCACCGGGCTGTTTGCCTATGCCGTGGGCGCTGTACTGGCCTATGCCTCACCGTGGGTCGCGCCGCTGGTGGGCATCGCCGCCTCGGCAGTGTGCTa                                                                       >  1:158100/1‑148 (MQ=255)                                                                                 ccGCGGCAAATACCCGCCACTGTGTACGGCAA‑ACCTGCCTCGCTACAACCTCACCGGGCTGTTTGCCTATGCCGTGGGCGCTGTACTGGCCTATGCCTCACCGTGGGTCGCGCCGCTGGTGGGCATCGCCGCCTCGGCAGTGTGCTACa                                                                     >  4:251542/1‑149 (MQ=255)                                                                                   gcgGCAAATACCCGCCACTGTGTACGGCAA‑ACCTGCCTCGCTACAACCTCACCGGGCTGTTTGCCTATGCCGTGGGCGCTGTACTGGCCTATGCCTCACCGTGGGTCGCGCCGCTGGTGGGCATCGCCGCCTCGGCAGTGTGCTACATc                                                                   >  5:149620/1‑149 (MQ=255)                                                                                        aaaTACCCGCCACTGTGTACGGCAA‑ACCTGCCTCGCTACAACCTCACCGGGCTGTTTGCCTATGCCGTGGGCGCTGTACTGGCCTATGCCTCACCGTGGGTCGCGCCGCTGGTGGGCATCGCCGCCTCGGCAGTGTGCTACATCGTCAt                                                              >  7:58320/1‑149 (MQ=255)                                                                                        aaaTACCCGCCACTGTGTACGGCAA‑ACCTGCCTCGCTACAACCTCACCGGGCTGTTTGCCTATGCCGTGGGCGCTGTACTGGCCTATGCCTCACCGTGGGTCGCGCCGCTGGTGGGCATCGCCGCCTCGGCAGTGTGCTACATCGTCAt                                                              >  3:156793/1‑149 (MQ=255)                                                                                         aaTACCCGCCACTGTGTACGGCAA‑ACCTGCCTCGCTACAACCTCACCGGGCTGTTTGCCTATGCCGTGGGCGCTGTACTGGCCTATGCCTCACCGTGGGTCGCGCCGCTGGTGGGCATCGCCGCCTCGGCAGTGTGCTACATCGTCAtt                                                             <  8:58320/149‑1 (MQ=255)                                                                                             cccGCCACTGTGTACGGCAA‑ACCTGCCTCGCTACAACCTCACCGGGCTGTTTGCCTATGCCGTGGGCGCTGTACTGGCCTATGCCTCACCGTGGGTCGCGCCGCTGGTGGGCATCGCCGCCTCGGCAGTGTGCTACATCGTCATTCTg                                                          >  1:348981/1‑148 (MQ=255)                                                                                             cccGCCACTGTGTACGGCAA‑ACCTGCCTCGCTACAACCTCACCGGGCTGTTTGCCTATGCCGTGGGCGCTGTACTGGCCTATGCCTCACCGTGGGTCGCGCCGCTGGTGGGCATCGCCGCCTCGGCAGTGTGCTACATCGTCATTCTg                                                          <  2:348981/148‑1 (MQ=255)                                                                                                 ccACTGTGTACGGCAA‑ACCTGCCTCGCTACAACCTCACCGGGCTGTTTGCCTATGCCGTGGGCGCTGTACTGGCCTATGCCTCACCGTgg                                                                                                                >  5:36385/1‑90 (MQ=255)                                                                                                 ccACTGTGTACGGCAA‑ACCTGCCTCGCTACAACCTCACCGGGCTGTTTGCCTATGCCGTGGGCGCTGTACTGGCCTATGCCTCACCGTgg                                                                                                                <  6:36385/90‑1 (MQ=255)                                                                                                 ccACTGTGTACGGCAA‑ACCTGCCTCGCTACAACCTCACCGGGCTGTTTGCCTATGCCGTGGGCGCTGTACTGGCCTATGCCTCACCGTGGGTCGCGCCGCTGGTGGGCATCGCCGCCTCGGCAGTGTGCTACATCGTCATTCTGGAGCt                                                     <  7:181006/149‑1 (MQ=255)                                                                                                   aCTGTGTACGGCAA‑ACCTGCCTCGCTACAACCTCACCGGGCTGTTTGCCTATGCCGTGGGCGCTGTACTGGCCTATGCCTCACCGTGGGTCGCGCCGCTGGTGGGCATCGCCGCCTCGGCAGTGTGCTACATCGTCATTCTGGAGCTgg                                                   <  2:169887/149‑1 (MQ=255)                                                                                                   aCTGTGTACGGCAA‑ACCTGCCTCGCTACAACCTCACCGGGCTGTTTGCCTATGCCGTGGGCGCTGTACTGGCCTATGCCTCACCGTGGGTCGCGCCGCTGGTGGGCATCGCCGCCTCGGCAGTGTGCTACATCGTCATTCTGGAGCTgg                                                   <  3:251542/149‑1 (MQ=255)                                                                                                          ataggcaaacagcccggtgaggttgtagcgaggcaggtttgccTATGCCGTGGGCGCTGTACTGGCCTATGCCTCACCGTGGGTCGCGCCGCTGGTGGGCATCGCCGCCTCGGCAGTGTGCTACATCGTCATTCTGGAGCTGGGCGCAc                                             >  5:165144‑M2/44‑149 (MQ=255)                                                                                                           taggcaaacagcccggtgaggttgtagcgaggcaggtttgccTATGCCGTGGGCGCTGTACTGGCCTATGCCTCACCGTGGGTCGCGCCGCTGGTGGGCATCGCCGCCTCGGCAGTGTGCTACATCGTCATTCTGGAGCTGGGCGCAcg                                            >  7:42857‑M2/43‑149 (MQ=255)                                                                                                                aaacagcccggtgaggttgtagcgaggcaggtttgccTATGCCGTGGGCGCTGTACTGGCCTATGCCTCACCGTGGGTCGCGCCGCTGGTGGGCATCGCCGCCTCGGCAGTGTGCTACATCGTCATTCTGGAGCTGGGCGCAcgccgcc                                       <  6:165144‑M2/112‑1 (MQ=255)                                                                                                                    cTGCCTCGCTACAACCTCACCGGGCTGTTTGCCTATGCCGTGGGCGCTGTACTGGCCTATGCCTCACCGTGGGTCGCGCCGCTGGTGGGCATCGCCGCCTCGGCAGTGTGCTACATCGTCATTCTGGAGCTGGGCGCACGCCGCcgcgc                                   <  1:206911/149‑1 (MQ=255)                                                                                                                        cTCGCTACAACCTCACCGGGCTGTTTGCCTATGCCGTGGGCGCTGTACTGGCCTATGCCTCACCGTGGGTCGCGCCGCTGGTGGGCATCGCCGCCTCGGCAGTGTGCTACATCGTCATTCTGGAGCTGGGCGCACGCCGCCGCGCGCCg                               >  3:68322/1‑149 (MQ=255)                                                                                                                        cTCGCTACAACCTCACCGGGCTGTTTGCCTATGCCGTGGGCGCTGTACTGGCCTATGCCTCACCGTGGGTCGCGCCGCTGGTGGGCATCGCCGCCTCGGCAGTGTGCTACATCGTCATTCTGGAGCTGGGCGCACGCCGCCGCGCGCCg                               >  5:77110/1‑149 (MQ=255)                                                                                                                                   cTCACCGGGCTGTTTGCCTATGCCGTGGGCGCTGTACTGGCCTATGCCTCACCGTGGGTCGCGCCGCTGGTGGGCATCGCCGCCTCGGCAGTGTGCTACATCGTCATTCTGGa                                                        <  2:146854/113‑1 (MQ=255)                                                                                                                                   cTCACCGGGCTGTTTGCCTATGCCGTGGGCGCTGTACTGGCCTATGCCTCACCGTGGGTCGCGCCGCTGGTGGGCATCGCCGCCTCGGCAGTGTGCTACATCGTCATTCTGGa                                                        >  1:146854/1‑113 (MQ=255)                                                                                                                                   cTCACCGGGCTGTTTGCCTATGCCGTGGGCGCTGTACTGGCCTATGCCTCACCGTGGGTCGCGCCGCTGGTGGGCATCGCCGCCTCGGCAGTGTGCTACATCGTCATTCTGGAGCTGGGCGCACGCCGCCGCGCGCCGGGCCAggcggg                    <  5:130862/149‑1 (MQ=255)                                                                                                                                      aCCGGGCGGTTAGCCTATGCCGGGCGCTCTGTACTGGCCTCTGCCTCACCGTGGGTCGCGCCGCTGGGGGGCATCTCCGCCTCGGCAGTGTGCTACATCGTCATTCTCTAGCTGGGCGCACGCCGCCGCGCGCCGGGCCAggcgggc                   <  5:204337/147‑1 (MQ=255)                                                                                                                                               tttgccTATGCCGTGGGCGCTGTACTGGCCTATGCCTCACCGTGGGTCGCGCCGCTGGTGGGCATCGCCGCCTCGGCAGTGTGCTACATCGTCATTCTGGAGCTGGGCGCACGCCGCCGCGCGCCGGGCCAGGCGGGCGTCGAGCCGt         <  6:374293‑M2/142‑1 (MQ=255)                                                                                                                                               tttgccTATGCCGTGGGCGCTGTACTGGCCTATGCCTCACCGTGGGTCGCGCCGCTGGTGGGCATCGCCGCCTCGGCAGTGTGCTACATCGTCATTCTGGAGCTGGGCGCACGCCGCCGCGCGCCGGGCCAGGCGGGCGTCGAGCCGt         >  7:163490‑M2/7‑148 (MQ=255)                                                                                                                                                 tgccTATGCCGTGGGCGCTGTACTGGCCTATGCCTCACCGTGGGTCGCGCCGCTGGTGGGCATCGCCGCCTCGGCAGTGTGCTACATCGTCATTCTGGAGCTGGGCGCACGCCGCCGCGCGCCGGGCCAGGCGGGCGTCGAGCCGTGa       <  6:77110‑M2/144‑1 (MQ=255)                                                                                                                                                    cTATGCCGTGGGCGCTGTACTGGCCTATGCCTCACCGTGGGTCGCGCCGCTGGTGGGCATCGCCGCCTCGGCAGTGTGCTACATCGTCATTCTGGAGCTGGGCGCACGCCGCCGCGCGCCGGGCCAGGCGGGCGTCGAGCCGTGAGCCt   <  2:158100‑M2/148‑1 (MQ=255)                                                                                                                                                     tATGCCGTGGGCGCTGTACTGGCCTATGCCTCACCGTGGGTCGCGCCGCTGGTGGGCATCGCCGCCTCGGCAGTGTGCTACATCGTCATTCTGGAGCTGGGCGCACGCCGCCGCGCGCCGGGCCAGGCGGGCGTCGAGCCGTGAGCCTg  >  5:15216/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                     CTGATCCCGTTCCTGGTGCTGCTGGGGTCGATCATTCCGCCGGTGGGTGGGGTGATCATGGCTGACTTCTGGTATCGCCACCGCGGCAAATACCCGCCACTGTGTACGGCAA‑ACCTGCCTCGCTACAACCTCACCGGGCTGTTTGCCTATGCCGTGGGCGCTGTACTGGCCTATGCCTCACCGTGGGTCGCGCCGCTGGTGGGCATCGCCGCCTCGGCAGTGTGCTACATCGTCATTCTGGAGCTGGGCGCACGCCGCCGCGCGCCGGGCCAGGCGGGCGTCGAGCCGTGAGCCTG  >  NC_002947/3616641‑3616936

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.