New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 511904 = | 29 (1.120) | 3 (0.130) | 3/260 | 3.3 | 10.2% | intergenic (+44/‑104) | trpC/PP_0423 | indole‑3‑glycerol phosphate synthase/hypothetical protein |
? | NC_002947 | 511982 = | 27 (1.170) | intergenic (+122/‑26) | trpC/PP_0423 | indole‑3‑glycerol phosphate synthase/hypothetical protein | |||||
Rejected: Coverage evenness skew score above cutoff. | |||||||||||
Rejected: Frequency below/above cutoff threshold. |
GTTCCTGCTCGGCGTGCAGGCCTTGTTCGACGCTCAGGGCCAGGGGTTGATCGGTCATTGATCCACCTATGATGTTGATTTCACTGGCCTCTTCGCGGGTAAACCCGCTCCTACGACAGGGCGCGTACCCGTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/512065‑511904 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccgcgaagaggccaGTGAAATCAACATCATAGGTGGATCAATGACCGATCAACCCCTGGCCCTGAGCGTCGAACAAGGCCTGCACGCCGAGCAGGAACTGCTGGCCGCCGTCTGCCGTGGCGAACGCGAAAGTGGCGTGCTGTTCTGGCGCCCCACCGACC > NC_002947/511982‑512128 GTTCCTGCTCGGCGTGCAGGCCTTGTTCGACGCTCAGGGCCAGGGGTTGATCGGTCATTGATCCACCTATGATGTTGATTTCACTGGCCTCTTCGCGGGTAAACCCGCTCCTACGACAGGGCGCGTACCCGTGTAGGAGCGGGCTTGC < 3:86448/148‑1 TCCTGCTCGGCGTGCAGGCCTTGTTCGACGCTCAGGGCCAGGGGTTGATCGGTCATTGATCCACCTATGATGTTGATTTCACTGGCCTCTTCGCGGGTAAACCCGCTCCTACGACAGGGCGCGTACCCGTGTAGGAGCGGGCTTGCCC < 7:78134/148‑1 GGCGTGCAGGCCTTGTTCGACGCTCAGGGCCAGGGGTTGATCGGTCATTGATCCACCTATGATGTTGATTTCACTGGCCTCTTCGCGGGTAAACCCGCTCCTACGACAGGGCGCGTACCCGTGTAGGAGCGGGCTTGCCCGCGAAGAG > 7:95738/1‑148 GCGTGCAGGCCTTGTTCGACGCTCAGGGCCAGGGGTTGATCGGTCATTGATCCACCTATGATGTTGATTTCACTGGCCTCTTCGCGGGTAAACCCGCTCCTACGCCAGGGCGCGTACCCGTGTAGGAGCGGGCTTGCCCGCGAAGAGG > 8:39874/1‑148 GCGTGCAGGCCTTGTTCGACGCTCAGGGCCAGGGGTTGATCGGTCATTGATCCACCTATGATGTTGATTTCACTGGCCTCTTCGCGGGTAAACCCGCTCCTACGACAGGGCGCGTACCCGTGTAGGAGCGGGCTTGCCCGCGAAGAGG < 2:23828/148‑1 CGTGCAGGCCTTGTTCGACGCTCAGGGCCAGGGGTTGATCGGTCATTGATCCACCTATGATGTTGATTTCACTGGCCTCTTCGCGGGTAAACCCGCTCCTACGACAGGGCGCGTACCCGTGTAGGAGCGGGCTTGCCCGCGAAGAGGC < 6:75375/148‑1 GGGTAAACCCGCTCCTACGACAGGGCGCGTACCCGTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCAGTGAAATCAACATCATAGGTGGATCAATGACCGATCAACCCCTGGCCCTG > 4:129310/1‑116 GGTAAACCCGCTCCTACGACAGGGCGCGTACCCGTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCAGTGAAATCAACATCATAGGTGGATCAATGACCGATCAACCCCTGGCCCTGA < 3:129310/116‑1 TCCTACGACAGGGCGCGTACCCGTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCAGTGAAATCAACATCATAGGTGGATCAATGCCCGATCAACCCCTGGCCCTGAGCGTCGAACAAGGCCTGCACGCCGCGCAGGAACTGCTGGCCGC > 5:31647/1‑148 CCCGCGAAGAGGCCAGTGAAATCAACATCATAGGTGGATCAATGACCGATCAACCCCTGGCCCTGAGCGTCGAACAAGGCCTGCACGCCGAGCAGGAACTGCTGGCCGCCGTCTGCCGTGGCGAACGCGAAAGTGGCGTGCTGTTCT < 5:75375/147‑1 CGCGAAGAGGCCAGTGAAATCAACATCATAGGTGGATCAATGACCGATCAACCCCTGGCCCTGAGCGTCGAACAAGGCCTGCACGCCGAGCAGGAACTGCTGGCCGCCGTCTGCCGTGGCGAACGCGAAAGTGGCGTGCTGTTCTGGC < 2:35693/148‑1 AGTGAAATCAACATCATAGGTGGATCAATGAACGATCAACCCCTGGCCCTGAGCGTCGAAAAAGGCCTGCACGCCGAGCAGGAACTGCTGGCCGCCGTCTGCCGTGGCGAACGCGAAAGTGGCGTGCTGTTCTGGCGCCCCACCGACC > 4:109129/1‑148 GTTCCTGCTCGGCGTGCAGGCCTTGTTCGACGCTCAGGGCCAGGGGTTGATCGGTCATTGATCCACCTATGATGTTGATTTCACTGGCCTCTTCGCGGGTAAACCCGCTCCTACGACAGGGCGCGTACCCGTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/512065‑511904 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccgcgaagaggccaGTGAAATCAACATCATAGGTGGATCAATGACCGATCAACCCCTGGCCCTGAGCGTCGAACAAGGCCTGCACGCCGAGCAGGAACTGCTGGCCGCCGTCTGCCGTGGCGAACGCGAAAGTGGCGTGCTGTTCTGGCGCCCCACCGACC > NC_002947/511982‑512128 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |