New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 511904 = | 29 (1.120) | 3 (0.130) | 3/260 | 3.3 | 10.2% | intergenic (+44/‑104) | trpC/PP_0423 | indole‑3‑glycerol phosphate synthase/hypothetical protein |
? | NC_002947 | 511982 = | 27 (1.170) | intergenic (+122/‑26) | trpC/PP_0423 | indole‑3‑glycerol phosphate synthase/hypothetical protein | |||||
Rejected: Coverage evenness skew score above cutoff. | |||||||||||
Rejected: Frequency below/above cutoff threshold. |
CTGGTGGGTGAGGCGTTCATGCGCGCCGAGCAGCCTGGCCTGGAATTACAGCGGCTGTTCTTCCCCGAGCAGGTGAAGAAGACTGTTCAGCAACTGGACTGATCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGGGCAAGCCCGCTCCTACACGGGTACGCGCCCTGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTGAAATCAACATCATAGGTGGATCAATGACCGATCAACCCCTGGCCCTGAGCGTCGAACAAGGC > NC_002947/511759‑512046 | cTGGTGGGTGAGGCGTTCATGCGCGCCGAGCAGCCTGGCCTGGAATTACAGCGGCTGTTCTTCCCCGAGCAGGTGAAGAAGACTGTTCAGCAACTGGACTGATCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATg < 4:132910/147‑1 (MQ=255) tggtggGTGAGGCGTTCATGCGCGCCGAGCAGCCTGGCCTGGAATTACAGCGGCTGTTCTTCCCCGAGCAGGTGAAGAAGACTGTTCAGCAACTGGACTGATCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGc > 5:87633/1‑148 (MQ=255) tgAGGCGTTCATGCGCGCCGAGCAGCCTGGCCTGGAATTACAGCGGCTGTTCTTCCCCGAGCAGGTGAAGAAGACTGTTCAGCAACTGGACTGATCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTcg > 5:8153/1‑148 (MQ=255) tCATGCGCGCCGAGCAGCCTGGCCTGGAATTACAGCGGCTGTTCTTCCCCGAGCAGGTGAAGAAGACTGTTCAGCAACTGGACTGATCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGGGCAAg > 1:35693/1‑148 (MQ=255) tCATGCGCGCCGAGCAGCCTGGCCTGGAATTACAGCGGCTGTTCTTCCCCGAGCAGGTGAAGAAGACTGTTCAGCAACTGGACTGATCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGGGCAAg > 5:14825/1‑148 (MQ=255) aTGCGCGCCGAGCAGCCTGGCCTGGAATTACAGCGGCTGTTCTTCCCCGAGCAGGTGAAGAAGACTGTTCAGCAACTGGACTGATCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGGGCAAGc < 1:37512/147‑1 (MQ=255) gcgcCGAGCAGCCTGGCCTGGAATTACAGCGGCTGTTCTTCCCCGAGCAGGTGAAGAAGACTGTTCAGCAACTGGACTGATCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGGGCAAGCCCGc < 3:64415/147‑1 (MQ=255) agcagcCTGGCCTGGAATTACAGCGGCTGTTCTTCCCCGAGCAGGTGAAGAAGACTGTTCAGCAACTGGACTGATCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGGGCAAGCCCGCTCCTaca < 6:6210/148‑1 (MQ=255) ctggAATTACAGCGGCTGTTCTTCCCCGAGCAGGTGAAGAAGACTGTTCAGCAACTGGACTGATCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGGGCAAGCCCGCTCCTACACGGGTACgcgc > 2:43874/1‑148 (MQ=255) cccGAGCAGGTGAAGAAGACTGTTCAGCAACTGGACTGATCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGGGCAAGCCCGCTCCTACACGGGTACGCGCCCTGTCGTAGGAGCGGGTTTAcc < 2:13745/147‑1 (MQ=255) ccGAGCAGGTGAAGAAGACTGTTCAGCAACTGGACTGATCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGGGCAAGCCCGCTCCTACACGGGTACGCGCCCTGTCGTAGGAGCGGGTTTAccc < 6:87633/147‑1 (MQ=255) aGGTGAAGAAGACTGTTCAGCAACTGGACTGATCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGGGCAAGCCCGCTCCTACACGGGTACGCGCCCTGTCGTAGGAGCGGGTTTACCCGCGAaga < 4:10271/148‑1 (MQ=255) aagaCTGTTCAGCAACTGGACTGATCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGGGCAAGCCCGCTCCTACACGGGTACGCGCCCTGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGt > 4:73221/1‑147 (MQ=255) gaCTGTTCAGCAACTGGACTGATCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGGGCAAGCCCGCTCCTACCCGGGTACGCGCCCTGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTGaa > 6:137290/1‑148 (MQ=255) gaCTGTTCAGCAACTGGACTGATCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGGGCAAGCCCGCTCCTACACGGGTACGCGCCCTGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTGaa > 8:77664/1‑148 (MQ=255) tCAGCAACTGGACTGATCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGGGCAAGCCCGCGCCTACACGGGAACGCGCCCTGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTGAAATCAAc < 5:4687/148‑1 (MQ=255) aTCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGGGCAAGCCCGCTCCTACACGGGTACGCGCCCTGTCGTAGGAGCGGGTTTACCcgc > 2:119157/1‑112 (MQ=255) aTCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGGGCAAGCCCGCTCCTACACGGGTACGCGCCCTGTCGTAGGAGCGGGTTTACCGGCGAAGAGGCCAGTGAAATCAACATCATAGGTGGATCa > 7:61841/1‑148 (MQ=255) aTCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGGGCAAGCCCGCTCCTACACGGGTACGCGCCCTGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTGAAATCAACATCATAGGTGGATCa > 2:44559/1‑148 (MQ=255) tCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGGGCAAGCCCGCTCCTACACGGGTACGCGCCCTGTCGTAGGAGCGGGTTTACCcgcg < 1:119157/112‑1 (MQ=255) aaTGAAGCCGGCGTTTTTGCCGGGTTTTTTGTACCTGTAATGGCCTCTTCGCGGGCAAGCCCGCTCCTACACGGGTACGCGCCCTGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTGAAATCAACATCATAGGTGGATCAATGa > 1:58304/1‑148 (MQ=255) ttttGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGGGCAAGCCCGCTCCTACACGGGTACGCGCCCTGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTGAAATCAACATCATAGGTGGATCAATGACCGATCAACCCCTg < 5:51291/148‑1 (MQ=255) ttttGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGGGCAAGCCCGCTCCTACACGGGTACGCGCCCTGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTGAAATCAACATCATAGGTGGATCAATGACCGATCAACCCCTg < 6:8153/148‑1 (MQ=255) ggCTTTTTTGTACCTGTAATGGCCTCTTCGCGGGCAAGCCCGCTCCTACACGGGTACGCGCCCTGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTGAAATCAACATCATAGGTGGATCAATGACCGATCAACCCCTGGCCCTGa < 4:117951/148‑1 (MQ=255) ttttGTACCTGTAATGGCCTCTTCGCGGGCAAGCCCGCTCCTACACGGGTACGCGCCCTGTCGTAGGAGCGGGTTTACCCGTGAAGAGGCCAGTGAAATCAACATCATAGGTGGATCAATGACCGATCAACCCCTGGCCCTGAGCGTc > 8:52556/1‑148 (MQ=255) tttGTACATGTAATGGCCTCTTCGCGGGCAAGCCCGCTCCTACACGGTTACTCGCCCTGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTGAAATCAACATCATAGGTGGATCAATGACCGATCAACCCCTGGCCCTTAGCGTc < 2:105690/147‑1 (MQ=255) cTGTAATGGCCTCTTCGCGGGCAAGCCCGCTCCTACACGGGTACGCGCCCTGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTGAAATCAACATCATAGGTGGATCAATGACCGATCAACCCCTGGCCCTGAGCGTCGAACAAgg < 6:49176/148‑1 (MQ=255) cTGTAATGGCCTCTTCGCGGGCAAGCCCGCTCCTACACGGGTACGCGCCCTGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTGAAATCAACATCATAGGTGGATCAATGACCGATCAACCCCTGGCCCTGAGCGTCGAACAAg < 1:43874/147‑1 (MQ=255) tGTAATGGCCTCTTCGCGGGCAAGCCCGCTCCTACACGGGTACGCGCCCTGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTGAAATCAACATCATAGGTGGATCAATGACCGATCAACCCCTGGCCCTGAGCGTCGAACAAGGc > 8:105420/1‑148 (MQ=255) | CTGGTGGGTGAGGCGTTCATGCGCGCCGAGCAGCCTGGCCTGGAATTACAGCGGCTGTTCTTCCCCGAGCAGGTGAAGAAGACTGTTCAGCAACTGGACTGATCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGGGCAAGCCCGCTCCTACACGGGTACGCGCCCTGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTGAAATCAACATCATAGGTGGATCAATGACCGATCAACCCCTGGCCCTGAGCGTCGAACAAGGC > NC_002947/511759‑512046 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |