New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	511904 =	29 (1.120)	3 (0.130)	3/260	3.3	10.2%	intergenic (+44/‑104)	trpC/PP_0423	indole‑3‑glycerol phosphate synthase/hypothetical protein
	?	NC_002947	511982 =	27 (1.170)					intergenic (+122/‑26)	trpC/PP_0423	indole‑3‑glycerol phosphate synthase/hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AAGACTGTTCAGCAACTGGACTGATCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGGGCAAGCCCGCTCCTACACGGGTACGCGCCCTGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTGAAATCAACATCATAGGTGGATCAATGACCGATCAACCCCTGGCCCTGAGCGTCGAACAAGGCCTGCACGCCGAGCAGGAACTGCTGGCCGCCGTCTGCCGTGGCGAACGCGAAAGTGGCGTGCTGTTCTGGCGCCCCACCGACC  >  NC_002947/511837‑512128                                                                                                                                                  |                                                                                                                                                   aagaCTGTTCAGCAACTGGACTGATCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGGGCAAGCCCGCTCCTACACGGGTACGCGCCCTGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGt                                                                                                                                                   >  4:73221/1‑147 (MQ=255)   gaCTGTTCAGCAACTGGACTGATCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGGGCAAGCCCGCTCCTACCCGGGTACGCGCCCTGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTGaa                                                                                                                                                >  6:137290/1‑148 (MQ=255)   gaCTGTTCAGCAACTGGACTGATCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGGGCAAGCCCGCTCCTACACGGGTACGCGCCCTGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTGaa                                                                                                                                                >  8:77664/1‑148 (MQ=255)         tCAGCAACTGGACTGATCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGGGCAAGCCCGCGCCTACACGGGAACGCGCCCTGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTGAAATCAAc                                                                                                                                          <  5:4687/148‑1 (MQ=255)                        aTCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGGGCAAGCCCGCTCCTACACGGGTACGCGCCCTGTCGTAGGAGCGGGTTTACCGGCGAAGAGGCCAGTGAAATCAACATCATAGGTGGATCa                                                                                                                           >  7:61841/1‑148 (MQ=255)                        aTCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGGGCAAGCCCGCTCCTACACGGGTACGCGCCCTGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTGAAATCAACATCATAGGTGGATCa                                                                                                                           >  2:44559/1‑148 (MQ=255)                            aaTGAAGCCGGCGTTTTTGCCGGGTTTTTTGTACCTGTAATGGCCTCTTCGCGGGCAAGCCCGCTCCTACACGGGTACGCGCCCTGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTGAAATCAACATCATAGGTGGATCAATGa                                                                                                                       >  1:58304/1‑148 (MQ=255)                                          ttttGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGGGCAAGCCCGCTCCTACACGGGTACGCGCCCTGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTGAAATCAACATCATAGGTGGATCAATGACCGATCAACCCCTg                                                                                                         <  5:51291/148‑1 (MQ=255)                                          ttttGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGGGCAAGCCCGCTCCTACACGGGTACGCGCCCTGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTGAAATCAACATCATAGGTGGATCAATGACCGATCAACCCCTg                                                                                                         <  6:8153/148‑1 (MQ=255)                                                 ggCTTTTTTGTACCTGTAATGGCCTCTTCGCGGGCAAGCCCGCTCCTACACGGGTACGCGCCCTGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTGAAATCAACATCATAGGTGGATCAATGACCGATCAACCCCTGGCCCTGa                                                                                                  <  4:117951/148‑1 (MQ=255)                                                      ttttGTACCTGTAATGGCCTCTTCGCGGGCAAGCCCGCTCCTACACGGGTACGCGCCCTGTCGTAGGAGCGGGTTTACCCGTGAAGAGGCCAGTGAAATCAACATCATAGGTGGATCAATGACCGATCAACCCCTGGCCCTGAGCGTc                                                                                             >  8:52556/1‑148 (MQ=255)                                                       tttGTACATGTAATGGCCTCTTCGCGGGCAAGCCCGCTCCTACACGGTTACTCGCCCTGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTGAAATCAACATCATAGGTGGATCAATGACCGATCAACCCCTGGCCCTTAGCGTc                                                                                             <  2:105690/147‑1 (MQ=255)                                                              cTGTAATGGCCTCTTCGCGGGCAAGCCCGCTCCTACACGGGTACGCGCCCTGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTGAAATCAACATCATAGGTGGATCAATGACCGATCAACCCCTGGCCCTGAGCGTCGAACAAgg                                                                                     <  6:49176/148‑1 (MQ=255)                                                              cTGTAATGGCCTCTTCGCGGGCAAGCCCGCTCCTACACGGGTACGCGCCCTGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTGAAATCAACATCATAGGTGGATCAATGACCGATCAACCCCTGGCCCTGAGCGTCGAACAAg                                                                                      <  1:43874/147‑1 (MQ=255)                                                               tGTAATGGCCTCTTCGCGGGCAAGCCCGCTCCTACACGGGTACGCGCCCTGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTGAAATCAACATCATAGGTGGATCAATGACCGATCAACCCCTGGCCCTGAGCGTCGAACAAGGc                                                                                    >  8:105420/1‑148 (MQ=255)                                                                      gCCTCTTCGCGGGCAAGCCCGCTCCTACACGGGTACGCGCCCTGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTGAAATCAACATCATAGGTGGATCAATGACCGATCAACCCCTGGCCCTGAGCGTCGAACAAGGCCTGCACg                                                                             >  6:75375/1‑148 (MQ=255)                                                                       ccTCTTCGCGGGCAAGCCCGCTCCTACACGGGTACGCGCCCTGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTGAAATCAACATCATAGGTGGATCAATGACCGATCAACCCCTGGCCCTGAGCGTCGAACAAGGCCTGCACGc                                                                            >  2:23828/1‑148 (MQ=255)                                                                       ccTCTTCGCGGGCAAGCCCGCTCCTACACGGGTACGCGCCCTGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTGAAATCAACATCATAGGTGGATCAATGACCGATCAACCCCTGGCCCTGAGCGTCGAACAAGGCCTGCACGc                                                                            <  8:39874/148‑1 (MQ=255)                                                                        ctctTCGCGGGCAAGCCCGCTCCTACACGGGTACGCGCCCTGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTGAAATCAACATCATAGGTGGATCAATGACCGATCAACCCCTGGCCCTGAGCGTCGAACAAGGCCTGCACGcc                                                                           <  7:95738/148‑1 (MQ=255)                                                                                gggCAAGCCCGCTCCTACACGGGTACGCGCCCTGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTGAAATCAACATCATAGGTGGATCAATGACCGATCAACCCCTGGCCCTGAGCGTCGAACAAGGCCTGCACGCCGAGCAGGa                                                                   >  7:78134/1‑148 (MQ=255)                                                                                  gCAAGCCCGCTCCTACACGGGTACGCGCCCTGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTGAAATCAACATCATAGGTGGATCAATGACCGATCAACCCCTGGCCCTGAGCGTCGAACAAGGCCTGCACGCCGAGCAGGAAc                                                                 >  3:86448/1‑148 (MQ=255)                                                                                   cAAGCCCGCTCCTACACGGGTACGCGCCCTGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTGAAATCAACATCATAGGTGGATCAATGACCGATCAACCCCTGGCCCTGAGCGTCGAACAAGGCCTGCACGCCGAGCAGGAAct                                                                >  5:134468/1‑148 (MQ=255)                                                                                        ccGCTCCTACACGGGTACGAGCCCTGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTGAAATCAACATCATAGGTGGATCAATGACCGATCAACCCCTGGCCCTGAGCGTCGAACAAGGCCTGCACGCCGAGCAGGAACTGCTgg                                                           >  6:46389/1‑148 (MQ=255)                                                                                                acacGGGTACGCGCCCTGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTGAAATCAACATCATAGGTGGATCAATGACCGATCAACCCCTGGCCCTGAGCGTCGAACAAGGCCTGCACGCCGAGCAGGAACTGCTGGCCGCCGTc                                                   >  5:104691/1‑148 (MQ=255)                                                                                                    gggTACGCGCCCTGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTGAAATCAACATCATAGGTGGATCAATGACCGATCAACCCCTGGCCCTGAGCGTCGAACAAGGCCTGCACGCCGAGCAGGAACTGCTGGCCGCCGTCTGcc                                               <  5:20818/148‑1 (MQ=255)                                                                                                                   cggaGGAGCGGGTTTACCCTCGAAGAGGCCAGTGAAATCAACATCATAGGTGGATCAATGACCGATCAACCCCTGGCCCTGAGCGTCGAACAAGGCCTGCACGCCGAGCAGGAACTGCTGGCCGCCGTCTGCCGTGGCGAACGCGaaa                                <  6:14825/145‑1 (MQ=255)                                                                                                                                  aCCCGCGAAGAGGCCAGTGAAATCAACATCATAGGTGGATCAATGACCGATCACCCCCTGGCCCTGAGCGTCGAACAAGGCCTGCACGCCGAGCAGGACCTGCTGGCCGCCGTCTGCCGTGGCGAACGCGAAAGTGGCGTGCTGTTCt                 >  1:133792/1‑148 (MQ=255)                                                                                                                                   cccGCGAAGAGGCCAGTGAAATCAACATCATAGGTGGATCAATGACCGATCAACCCCTGGCCCTGAGCGTCGAACAAGGCCTGCACGCCGAGCAGGAACTGCTGGCCGCCGTCTGCCGTGGCGAACGCGAAAGTGGCGTGCTGTTCt                 <  5:75375/147‑1 (MQ=255)                                                                                                                                     cgcgAAGAGGCCAGTGAAATCAACATCATAGGTGGATCAATGACCGATCAACCCCTGGCCCTGAGCGTCGAACAAGGCCTGCACGCCGAGCAGGAACTGCTGGCCGCCGTCTGCCGTGGCGAACGCGAAAGTGGCGTGCTGTTCTGgc              <  2:35693/148‑1 (MQ=255)                                                                                                                                                 aGTGAAATCAACATCATAGGTGGATCAATGAACGATCAACCCCTGGCCCTGAGCGTCGAAAAAGGCCTGCACGCCGAGCAGGAACTGCTGGCCGCCGTCTGCCGTGGCGAACGCGAAAGTGGCGTGCTGTTCTGGCGCCCCACCGAcc  >  4:109129/1‑148 (MQ=255)                                                                                                                                                  |                                                                                                                                                   AAGACTGTTCAGCAACTGGACTGATCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGGGCAAGCCCGCTCCTACACGGGTACGCGCCCTGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTGAAATCAACATCATAGGTGGATCAATGACCGATCAACCCCTGGCCCTGAGCGTCGAACAAGGCCTGCACGCCGAGCAGGAACTGCTGGCCGCCGTCTGCCGTGGCGAACGCGAAAGTGGCGTGCTGTTCTGGCGCCCCACCGACC  >  NC_002947/511837‑512128

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.