New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5684080 =	39 (1.510)	3 (0.120)	3/276	3.4	7.6%	coding (2813/4941 nt)	PP_4988	signal transduction histidine kinase CheA/CheY‑like receiver
	?	NC_002947	5684118 =	36 (1.470)					coding (2775/4941 nt)	PP_4988	signal transduction histidine kinase CheA/CheY‑like receiver
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CCTGATGCGCGACCTGCACACCCTCAAAGGCGTGGCGCGCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5684121‑5684080 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcgcatCAGGTTGTCCACCTCGACGCTGCTGCGCGGGTCGGCCTGCCAGCGCGCCAGGGCCGCCGCGGCGCTCTCGACGATGTCCGAGCTTTCTTCCAGGAACACTTCCAGCAGCTCTTCGCCGGGGCTTTCCGGCTCCTCGGCAAGCG  >  NC_002947/5684118‑5684260                                                                                                                                                                                           CCTGATGCGCGACCTGCACACCCTCAAAGGCGTGGCGCGCATCAGGTTGTCCACCTCGACGCTGCTGCGCGGGTCGGCCTGCCAGCGCGCCAGGGCCGCCGCGGCGCTCTCGACGATGTCCGAGCTTTCTTCCAGGAACACTTCCA                                         >  3:94365/1‑146   TGATGCGCGACCTGCACACCCTCAAAGGCGTGGCGCGCATCAGGTTGTCCACCTCGACGCTGCTGCGCGGGTCGGCCTGCCA                                                                                                       >  4:14026/1‑82    GATGCGCGACCTGCACACCCTCAAAGGCGTGGCGCGCATCAGGTTGTCCACCTCGACGCTGCTGCGCGGGTCGGCCTGCCAG                                                                                                      <  3:14026/82‑1                                      CGCATCAGGTTGTCCACCTCGACGCTGCTGCGCGGGTCGGCCTGCCAGCGCGCCAGGGCCGCCGCGGCGCTCTCGACGATGTCCGAGCTTTCTTCCAGGAACACTTCCAGCAGCTCTTCGCCGGGGCTTTCCGGCTCCTCGGCAAGCG  >  3:13593/1‑148                                                                                                                                                                                           CCTGATGCGCGACCTGCACACCCTCAAAGGCGTGGCGCGCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5684121‑5684080 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcgcatCAGGTTGTCCACCTCGACGCTGCTGCGCGGGTCGGCCTGCCAGCGCGCCAGGGCCGCCGCGGCGCTCTCGACGATGTCCGAGCTTTCTTCCAGGAACACTTCCAGCAGCTCTTCGCCGGGGCTTTCCGGCTCCTCGGCAAGCG  >  NC_002947/5684118‑5684260

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.