New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5684080 =	39 (1.510)	3 (0.120)	3/276	3.4	7.6%	coding (2813/4941 nt)	PP_4988	signal transduction histidine kinase CheA/CheY‑like receiver
	?	NC_002947	5684118 =	36 (1.470)					coding (2775/4941 nt)	PP_4988	signal transduction histidine kinase CheA/CheY‑like receiver
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TGCAGCAGTGCGAACAGTGGCGCACTTGGCGGCAATCTACCCGCAGCCAACAGCTCGTAGAGGAACTCCAGTTCGTGGGCCAGGTCGCCGATCGGGGTGATTTCGACCATGCGCGCCACGCCTTTGAGGGTGTGCAGGTCGCGCATCAGGTTGTCCACCTCGACGCTGCTGCGCGGGTCGGCCTGCCAGCGCGCCAGGGCCGCCGCGGCGCTCTCGACGATGTCCGAGCTTTCTTCCAGGAACACTTCCAGCAGCTCTTCGCCGGGGCTTTCCGGCTCCTCGGCAAGCG  >  NC_002947/5683972‑5684260                                                                                                                                                   |                                                                                                                                               tGCAGCAGTGCGAACAGTGGCGCACTTGGCGGCAATCTACCCGCAGCCAACAGCTCGTAGAGGAACTCCAGTTCGTGGGCCAGGTCGCCGATCGGGGTGATTTCGACCATGCGCGCCACGCCTTTGAGGGTGTGCAGGTCGCGCATCa                                                                                                                                               >  6:98615/1‑148 (MQ=255)     gcagTGCGAACAGTGGCGCACTTGGCGGCAATCTACCCGCAGCCAACAGCTCGTAGAGGAACTCCAGTTCGTGGGCCAGGTCGCCGATCGGGGTGATTTCGACCATGCGCGCCACGCCTTTGAGGGTGTGCAGGTCGCGCATCAGGtt                                                                                                                                           <  3:31758/148‑1 (MQ=255)     gcagTGCGAACAGTGGCGCACTTGGCGGCAATCTACCCGCAGCCAACAGCTCGTAGAGGAACTCCAGTTCGTGGGCCAGGTCGCCGATCGGGGGGATTTCGACCATGCGCGCCACGCCTTTGAGGGTGTGCAGGTCGCGCATCAGGtt                                                                                                                                           <  8:88384/148‑1 (MQ=255)     gcagGGCGAACAGTGGCGCACTTGGCGGCAATCTACCCGCAGCCAACAGCTCGTAGAGGAACTCCAGTTCGTGGGCCAGGTCGCCGATCGGGGTGATTTCGACCATGCGCGCCACGCCTTTGAGGGTGTGCAGGTCGCGCATCAGGtt                                                                                                                                           <  3:29949/148‑1 (MQ=255)            gAACAGTGGCGCACTTGGCGGCAATCTACCCGCAGCCAACAGCTCGTAGAGGAACTCCAGTTCGTGGGCCAGGTCGCCGATCGGGGTGATTTCGACCATGCGCGCCACGCCTTTGAGGGTGTGCAGGTCGCGCATCAGGTTGTCCAcc                                                                                                                                    >  2:5165/1‑148 (MQ=255)             aaCAGTGGCGCACTTGTCGGCAATCTACCCGCAGCCAACAGCTCGTAGAGGAACTCCAGTTCGTTGGCCAGGTCGCCGATCGGGGTGATTTCGACCATGCGCGCCACGCCTTTGAGGGTGTTCAGGTCGCGCATCAGGTTGTCCACCt                                                                                                                                   <  3:65286/148‑1 (MQ=255)                    gcgcACTTGGCGGCAATCTACCCGCAGCCAACAGCTCGTAGAGGAACTCCAGTTCGTGGGCCAGGTCGCCGATCGGGGTGATTTCGACCATGCGCGCCACGCCTGTGAGGGTGTGCAGGTCGCGCATCAGGTTGTCCACCTCGACgct                                                                                                                            >  6:136964/1‑148 (MQ=255)                     cgcACTTGGCGGCAATCTACCCGCAGCCAACAGCTCGTAGAGGAACTCCAGTTCGTGGGCCAGGTCGCCGATCGGGGTGATTTCGACCATGCGCGCCACGCCTTTGAGGGTGTGCAGGTCGCGCATCAGGTTGTCCACCTCGACgctg                                                                                                                           >  6:125948/1‑148 (MQ=255)                        aCTTGGCGGCAATCTACCCGCAGCCAACAGCTCGTAGAGGAACTCCAGTTCGTGGGCCAGGTCGCCGATCGGGGTGATTTCGACCATGCGCGCCACGCCTTTGAGGGTGTGCAGGTCGCGCATCAGGTTGTCCACCTCGACGctgctg                                                                                                                        >  2:147400/1‑148 (MQ=255)                          ttGGCGGCAATCTACCCGCAGCCAACAGCTCGTAGAGGAACTCCAGTTCGTGGGCCAGGTCGCCGATCGGGGTGATTTCGACCATGCGCGCCACGCCTTTGAGGGTGTGCAGGTCGCGCATCAGGTTGTCCACCTCGACGCTGCTgcg                                                                                                                      >  4:115465/1‑148 (MQ=255)                              cggcAATCTACCCGCAGCCAACAGCTCGTAGAGGAACTCCAGTTCGTGGGCCAGGTCGCCGATCGGGGTGATTTCGACCATGCGCGCCACGCCTTTGAGGGTGTGCAGGTCGCGCATCAGGTTGTCCACCTCGACGCTGCTGCGCggg                                                                                                                  <  3:61691/148‑1 (MQ=255)                               ggcAATCTACCCGCAGCCAACAGCTCGTAGAGGAACTCCAGTTCGTGGGCCAGGTCGCCGATCGGGGTGATTTCGACCATGCGCGCCACGCCTTTGAGGGTGTGCAGGTCGCGCATCAGGTTGTCCACCTCGACGCTGCTGCGCGGGt                                                                                                                 >  5:14271/1‑148 (MQ=255)                                 cAATCTACCCGCAGCCAACAGCTCGTAGAGGAACTCCAGTTCGTGGGCCAGGTCGCCGATCGGGGTGATTTCGACCATGAGCGCCACGCCTTTGAGGGTGTGCAGGTCGCGCATCAGGTTGTCCACCTCGACGCTGCTGCGCGGGTCg                                                                                                               >  1:48351/1‑148 (MQ=255)                                   aTCTACCCGCAGCCAACAGCTCGTAGAGGAACTCCAGTTCGTGGGCCAGGTCGCCGATCGGGGTGATTTCGACCATGCGCGCCACGCCTTTGAGGGTGTGCAGGTCGCGCATCAGGTTGTCCACCTCGACGCTGCTGCGCGGGTCGGc                                                                                                             >  6:6005/1‑148 (MQ=255)                                         ccGCAGCCAACAGCTCGTAGAGGAACTCCAGTTCGTGGGCCAGGTCGCCGATCGGGGTGATTTCGACCATGCGCGCCACGCCTTTGAGGGTGTGCAGGTCGCGCATCAGGTTGTCCACCTCGACGCTGCTGCGCGGGTCGGCCTGCCa                                                                                                       <  2:68236/148‑1 (MQ=255)                                         ccGCAGCCAACAGCTCGTAGAGGAACGCCAGTTCGTGGGCCAGGTCGCCGATCGGGGTGATTTCGACCATGCGCGCCACGCCTTTGAGGGTGTGCAGGTCGCGCATCAGGTTGTCCACCTCGACGCTGCTGCGCGGGTCGGCCTGCCa                                                                                                       <  8:58128/148‑1 (MQ=255)                                                       tCGTAGAGGAACTCCAGTTCGTGGGCCAGGTCGCCGATCGGGGTGATTTCGACCATGCGCGCCACGCCTTTGAGGGTGTGCAGGTCGCGCATCAGCTTGTCCACCTCGACGCTGCTGCGCGGGTCGGCCTGCCAGCGCGCCAGGgccg                                                                                         >  5:6996/1‑148 (MQ=255)                                                             agGAACTCCAGTTCGTGGGCCAGGTCGCCGATCGGGGTGATTTCGACCATGCGCGCCACGCCTTTGAGGGTGTGCAGGTCGCGCATCAGGTTGTCCACCTCGACGCTGCTGCGCGGGTCGGCCTGCCAGCGCGCCAGGGCCGCCgcgg                                                                                   >  8:85165/1‑148 (MQ=255)                                                              ggAACTCCAGTTCGTGGGCCAGGTCGCCGATCGGGGTGATTTCGACCATGCGCGCCACGCCTTTGAGGGTGTGCAGGTCGCGCATCAGGTTGTCCACCTCGACGCTGCTGCGCGGGTCGGCCTGCCAGCGCGCCAGGGCCGCCgcggc                                                                                  >  5:98762/1‑148 (MQ=255)                                                                aaCTCCAGTTCGTGGGCCAGGTCGCCGATCGGGGTGATTTCGACCATGCGCGCCACGCCTTTGAGGGTGTGCAGGTCGCGCATCAGGTTGTCCACCTCGACGCTGCTGCGCGGGTCGGCCTGCCAGCGCGCCAGGGCCGCCGCGgcgc                                                                                >  4:131801/1‑148 (MQ=255)                                                                   tCCAGTTCGTGGGCCAGGTCGCCGATCGGGGTGATTTCGACCATGCGCGCCACGCCTTTGAGGGTGTGCAGGTCGCGCATCAGGTTGTCCACCTCGACGCTGCTGCGCGGGTCGGCCTGCCAGCGCGCCAGGGCCGCCGCGGCGctct                                                                             >  2:29100/1‑148 (MQ=255)                                                                     cAGTTCGTGGGCCAGGTCGCCGATCGGGGTGATTTCGACCATGCGCGCCACGCCTTTGAGGGTGTGCAGGTCGCGCATCAGGTTGTCCACCTCGACGCTGCTGCGCGGGTCGGCCTGCCAGCGCGCCAGGGCCGCCGCGGCGCTCTcg                                                                           >  4:99576/1‑148 (MQ=255)                                                                      aGTTCGTGGGCCAGGTCGCCGATCGGGGTGATTTCGACCATGCGCGCCACGCCTTTGAGGGTGTGCAGGTCGCGCATCAGGTTGTCCACCTCGACGCTGCTGCGCGGGTCGGCCTGCCAGCGCGCCAGGGCCGCCGCGGCGCgctc                                                                            <  8:87875/146‑1 (MQ=255)                                                                      aGTTCGTGGGCCAGGGCGCCGATCGGGGGGATTTCGACCATGCGCGCCACGCCTTTGAGGGTGTGCAGGTCGCGCATCAGGTTGTCCACCTCGACGCTGCTGCGCGGGTCGGCCTGCCAGCGCGCCAGGGCCGCCGCGGCGCTCTcga                                                                          <  5:133853/148‑1 (MQ=255)                                                                                ccAGGTCGCCGATCGGGGTGATTTCGACCATGCGCGCCACGCCTTTGAGGGTGTGCAGGTCGCGCATCAGGTTGTCCACCTCGACGCTGCTGCGCGGGTCGGCCTGCCAGCGCGCCAGGgc                                                                                           >  3:128703/1‑121 (MQ=255)                                                                                 cAGGTCGCCGATCGGGGTGATTTCGACCATGCGCGCCACGCCTTTGAGGGTGTGCAGGTCGCGCATCAGGTTGTCCACCTCGACGCTGCTGCGCGGGTCGGCCTGCCAGCGCGCCAGGgcc                                                                                          <  4:128703/121‑1 (MQ=255)                                                                                  aGGTCGCCGATCGGGGTGATTTCGACCATGCGCGCCACGCCTTTGAGGGTGTGCAGGTCGCGCATCAGGTTGTCCACCTCGACGCTGCTGCGCGGGTCGGCCTGCCAGCGCGCCAGGGCCGCCGCGGCGCTCTCGACGATGTCCGAGc                                                              <  1:145978/148‑1 (MQ=255)                                                                                           aTCGGGGTGATTTCGACCATGCGCGCCACGCCTTTGAGGGTGTGCAGGTCGCGCATCAGGTTGTCCACCTCGACGCTGCTGCGCGGGTCGGCCTGCCAGCGCGCCAGGGCCGCCGCGGCGCTCTCGACGATGTCCGAGCTTTCTTCCa                                                     <  1:2590/148‑1 (MQ=255)                                                                                                  tGATTTCGACCATGCGCGCCACGCCTTTGAGGGTGTGCAGGTCGCGCATCAGGTTGTCCACCTCGACGCTGCTGCGCGGGTCGGCCTGCCAGCGCGCCAGGGCCGCCGCGGCGCTCTCGACGATGTCCGAGCTTTCTTCCAGGAacac                                              >  2:135392/1‑148 (MQ=255)                                                                                                     tttCGACCATGCGCGCCACGCCTTTGAGGGTGTGCAGGTCGCGCATCAGGTTGTCCACCTCGACGCTGCTGCGCGGGTCGGCCTGCCAGCGCGCCAGGGCCGCCGCGGCGCTCTCGACGATGTCCGAGCTTTCTTCCAGGAACACtt                                            >  2:76433/1‑147 (MQ=255)                                                                                                                     cACGCCTTTGAGGGTGTGCAGGTCGCGCATCAGGTTGTCCACCTCGACGCTGCTGCGCGGGTCGGCCTGCCAGCGCGCCAGGGCCGCCGCGGCGCTCTCGACGATGTCCGAGCTTTCTTCCAGGAACACTTCCAGCAGCTCTTCGCCg                           <  5:98615/148‑1 (MQ=255)                                                                                                                        gCCTTTGAGGGTGTGCAGGTCGCGCATCAGGTTGTCCACCTCGACGCTGCTGCGCGGGTCGGCCTGCCAGCGCGCCAGGGCCGCCGCGGCGCTCTCGACGATGTCCGAGCTTTCTTCCAGGAACACTTCCAGCAGCTCTTCGCCgggg                        <  7:85165/148‑1 (MQ=255)                                                                                                                              gAGGGTGTGCAGGTCGCGCATCAGGTTGTCCACCTCGACGCTGCTGCGCGGGTCGGCCTGCCAGCGCGCCAGGGCCGCCGCGGCGCTCTCGACGATGTCCGAGCTTTCTTCCAGGAACACTTCCAGCAGCTCTTCGCCGGGGCTTTc                   <  8:77555/147‑1 (MQ=255)                                                                                                                               aGGGTGTGCAGGTCGCGCATCAGGTTGTCCACCTCGACGCTGCTGCGCGGGTCGGCCTGCCAGCGCGCCAGGGCCGCCGCGGCGCTCTCGACGATGTCCGAGCTTTCTTCCAGGAACACTTCCAGCAGCTCTTCGCCGGGGCTTTcc                  <  3:99576/147‑1 (MQ=255)                                                                                                                                      gCAGGTCGCGCATCAGGTTGTCCACCTCGACGCTGCTGCGCGGGTCGGCCTGCCAGCGCGCCAGGGCCGCCGCGGCGCTCTCGACGATGTCCGAGCTTTCTTCCAGGAACACTTCCAGCAGCTCTTCGCCGGGGCTTTCCGGctcctc          >  2:10949/1‑148 (MQ=255)                                                                                                                                          gTCGCGCATCAGGTTGTCCACCTCGACGCTGCTGCGCGGGTCGGCCTGCCAGCGCGCCAGGGCCGCCGCGGCGCTCTCGACGATGTCCGAGCTTTCTTCCAGGAGCACTTCCAGCAGCTCTTCGCCGGGGATTTCCGGCTCCTCgg        >  6:6050/1‑146 (MQ=255)                                                                                                                                              cgcATCAGGTTGTCCACCTCGACGCTGCTGCGCGGGTCGGCCTGCCAGCGCGCCAGGGCCGCCGCGGCGCTCTCGACGATGTCCGAGCTTTCTTCCAGGAACACTTCCAGCAGCTCTTCGCCGGGGCTTTCCGGCTCCTCGGCAAGCg  >  3:13593/1‑148 (MQ=255)                                                                                                                                                   |                                                                                                                                               TGCAGCAGTGCGAACAGTGGCGCACTTGGCGGCAATCTACCCGCAGCCAACAGCTCGTAGAGGAACTCCAGTTCGTGGGCCAGGTCGCCGATCGGGGTGATTTCGACCATGCGCGCCACGCCTTTGAGGGTGTGCAGGTCGCGCATCAGGTTGTCCACCTCGACGCTGCTGCGCGGGTCGGCCTGCCAGCGCGCCAGGGCCGCCGCGGCGCTCTCGACGATGTCCGAGCTTTCTTCCAGGAACACTTCCAGCAGCTCTTCGCCGGGGCTTTCCGGCTCCTCGGCAAGCG  >  NC_002947/5683972‑5684260

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.