New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5684080 =	39 (1.510)	3 (0.120)	3/276	3.4	7.6%	coding (2813/4941 nt)	PP_4988	signal transduction histidine kinase CheA/CheY‑like receiver
	?	NC_002947	5684118 =	36 (1.470)					coding (2775/4941 nt)	PP_4988	signal transduction histidine kinase CheA/CheY‑like receiver
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TCAAGCATATGCGCCAGCCGGTCGTGGCAGTTCTGCAGCAGTGCGAACAGTGGCGCACTTGGCGGCAATCTACCCGCAGCCAACAGCTCGTAGAGGAACTCCAGTTCGTGGGCCAGGTCGCCGATCGGGGTGATTTCGACCATGCGCGCCACGCCTTTGAGGGTGTGCAGGTCGCGCATCAGGTTGTCCACCTCGACGCTGCTGCGCGGGTCGGCCTGCCAGCGCGCCAGGGCCGCCGCGGCGCTCTCGACGATGTCCGAGCTTTCTTCCAGGAACACTT  >  NC_002947/5683939‑5684218                                                                                                                                              |                                                                                                                                           tCAAGCATATGCGCCAGCCGGTCGTGGCAGTTCTGCAGCAGTGCGAACAGTGGCGCACTTGGCGGCAATCTACCCGCAGCCAACAGCTCGTAGAGGAACTCCAGTTCGTGGGCCAGGTCGCCGATCGGGGTGATTTCGACCATgcgcg                                                                                                                                      >  7:77555/1‑148 (MQ=255)     gCATATGCGCCAGCCGGTCGTGGCAGTTCTGCAGCAGTGCGAACAGTGGCGCACTTGGCGGCAATCTACCCGCAGCCAACAGCTCGTAGAGGAACTCCAGTTCGTGGGCCAGGTCGCCGATCGGGGTGATTTCGACCATGCGCGCCAc                                                                                                                                  >  4:50605/1‑148 (MQ=255)             gcCAGCCGGTCGTGGCAGTTCTGCAGCAGTGCGAACAGTGTCGCACTTGGCGGCAATCTACCCGCAGCCAACAGCTCGTAGAGGAACTCCAGTTCGTGGGCCAGGTCGCCGATCGGGGTGATTTCGACCATGCGCGCCACGCCTTTg                                                                                                                           <  7:38836/147‑1 (MQ=255)             gcCAGCCGGTCGTGGCAGTTCTGCAGCAGTGCGAACAGTGGCGCACTTGGCGGCAATCTACCCGCAGCCAACAGCTCGTAGAGGAACTCCAGTTCGTGGGCCAGGTCGCCGATCGGGGTGATTTCGACCATGCGCGCCACGCCTTTGa                                                                                                                          <  7:31835/148‑1 (MQ=255)               cAGCCGGTCGTGGCAGTTCTGCAGCAGTGCGAACAGTGGCGCACTTGGCGGCAATCTACCCGCAGCCAACAGCTCGTAGAGGAACTCCAGTTCGTGGGCCAGGTCGCCGATCGGGGTGATTTCGACCATGCGCGCCACGCCTTTGAgg                                                                                                                        <  1:4730/148‑1 (MQ=255)                aGCCGGTCGTGGCAGTTCTGCAGCAGTGCGAACAGTGGCGCACTTGGCGGCAATCTACCCGCAGCCAACAGCTCGTAGAGGAACTCCAGTTCGTGGGCCAGGTCGCCGATCGGGGTGATTTCGACCATGCGCGCCACGCCTTTGAggg                                                                                                                       <  1:98892/148‑1 (MQ=255)                     gTCGTGGCAGTTCTGCAGCAGTGCGAACAGTGGCGCACTTGGCGGCAATCTACCCGCAGCCAACAGCTCGTAGAGGAACTCCAGTTCGTGGGCCAGGTCGCCGATCGGGGTGATTTCGACCATGCGCGCCACGCCTTTGAGGGTGTGc                                                                                                                  <  7:94659/148‑1 (MQ=255)                      tCGTGGCAGTTCTGCAGCAGTGCGAACAGTGGCGCACTTGGCGGCAATCTACCCGCAGCCAACAGCTCGTAGAGGAACTCCAGTTCGTGGGCCAGGTCGCCGATCGGGGTGGTTTCGACCATGCGCGCCACGCCTTTGAGGGTGTGCa                                                                                                                 >  3:77465/1‑148 (MQ=255)                                  tGCAGCAGTGCGAACAGTGGCGCACTTGGCGGCAATCTACCCGCAGCCAACAGCTCGTAGAGGAACTCCAGTTCGTGGGCCAGGTCGCCGATCGGGGTGATTTCGACCATGCGCGCCACGCCTTTGAGGGTGTGCAGGTCGCGCATCa                                                                                                     >  6:98615/1‑148 (MQ=255)                                      gcagTGCGAACAGTGGCGCACTTGGCGGCAATCTACCCGCAGCCAACAGCTCGTAGAGGAACTCCAGTTCGTGGGCCAGGTCGCCGATCGGGGTGATTTCGACCATGCGCGCCACGCCTTTGAGGGTGTGCAGGTCGCGCATCAGGtt                                                                                                 <  3:31758/148‑1 (MQ=255)                                      gcagTGCGAACAGTGGCGCACTTGGCGGCAATCTACCCGCAGCCAACAGCTCGTAGAGGAACTCCAGTTCGTGGGCCAGGTCGCCGATCGGGGGGATTTCGACCATGCGCGCCACGCCTTTGAGGGTGTGCAGGTCGCGCATCAGGtt                                                                                                 <  8:88384/148‑1 (MQ=255)                                      gcagGGCGAACAGTGGCGCACTTGGCGGCAATCTACCCGCAGCCAACAGCTCGTAGAGGAACTCCAGTTCGTGGGCCAGGTCGCCGATCGGGGTGATTTCGACCATGCGCGCCACGCCTTTGAGGGTGTGCAGGTCGCGCATCAGGtt                                                                                                 <  3:29949/148‑1 (MQ=255)                                             gAACAGTGGCGCACTTGGCGGCAATCTACCCGCAGCCAACAGCTCGTAGAGGAACTCCAGTTCGTGGGCCAGGTCGCCGATCGGGGTGATTTCGACCATGCGCGCCACGCCTTTGAGGGTGTGCAGGTCGCGCATCAGGTTGTCCAcc                                                                                          >  2:5165/1‑148 (MQ=255)                                              aaCAGTGGCGCACTTGTCGGCAATCTACCCGCAGCCAACAGCTCGTAGAGGAACTCCAGTTCGTTGGCCAGGTCGCCGATCGGGGTGATTTCGACCATGCGCGCCACGCCTTTGAGGGTGTTCAGGTCGCGCATCAGGTTGTCCACCt                                                                                         <  3:65286/148‑1 (MQ=255)                                                     gcgcACTTGGCGGCAATCTACCCGCAGCCAACAGCTCGTAGAGGAACTCCAGTTCGTGGGCCAGGTCGCCGATCGGGGTGATTTCGACCATGCGCGCCACGCCTGTGAGGGTGTGCAGGTCGCGCATCAGGTTGTCCACCTCGACgct                                                                                  >  6:136964/1‑148 (MQ=255)                                                      cgcACTTGGCGGCAATCTACCCGCAGCCAACAGCTCGTAGAGGAACTCCAGTTCGTGGGCCAGGTCGCCGATCGGGGTGATTTCGACCATGCGCGCCACGCCTTTGAGGGTGTGCAGGTCGCGCATCAGGTTGTCCACCTCGACgctg                                                                                 >  6:125948/1‑148 (MQ=255)                                                         aCTTGGCGGCAATCTACCCGCAGCCAACAGCTCGTAGAGGAACTCCAGTTCGTGGGCCAGGTCGCCGATCGGGGTGATTTCGACCATGCGCGCCACGCCTTTGAGGGTGTGCAGGTCGCGCATCAGGTTGTCCACCTCGACGctgctg                                                                              >  2:147400/1‑148 (MQ=255)                                                           ttGGCGGCAATCTACCCGCAGCCAACAGCTCGTAGAGGAACTCCAGTTCGTGGGCCAGGTCGCCGATCGGGGTGATTTCGACCATGCGCGCCACGCCTTTGAGGGTGTGCAGGTCGCGCATCAGGTTGTCCACCTCGACGCTGCTgcg                                                                            >  4:115465/1‑148 (MQ=255)                                                               cggcAATCTACCCGCAGCCAACAGCTCGTAGAGGAACTCCAGTTCGTGGGCCAGGTCGCCGATCGGGGTGATTTCGACCATGCGCGCCACGCCTTTGAGGGTGTGCAGGTCGCGCATCAGGTTGTCCACCTCGACGCTGCTGCGCggg                                                                        <  3:61691/148‑1 (MQ=255)                                                                ggcAATCTACCCGCAGCCAACAGCTCGTAGAGGAACTCCAGTTCGTGGGCCAGGTCGCCGATCGGGGTGATTTCGACCATGCGCGCCACGCCTTTGAGGGTGTGCAg                                                                                                                >  2:35351/1‑107 (MQ=255)                                                                ggcAATCTACCCGCAGCCAACAGCTCGTAGAGGAACTCCAGTTCGTGGGCCAGGTCGCCGATCGGGGTGATTTCGACCATGCGCGCCACGCCTTTGAGGGTGTGCAGGTCGCGCATCAGGTTGTCCACCTCGACGCTGCTGCGCGGGt                                                                       >  5:14271/1‑148 (MQ=255)                                                                  cAATCTACCCGCAGCCAACAGCTCGTAGAGGAACTCCAGTTCGTGGGCCAGGTCGCCGATCGGGGTGATTTCGACCATGAGCGCCACGCCTTTGAGGGTGTGCAGGTCGCGCATCAGGTTGTCCACCTCGACGCTGCTGCGCGGGTCg                                                                     >  1:48351/1‑148 (MQ=255)                                                                    aTCTACCCGCAGCCAACAGCTCGTAGAGGAACTCCAGTTCGTGGGCCAGGTCGCCGATCGGGGTGATTTCGACCATGCGCGCCACGCCTTTGAGGGTGTGCAGGTCGCGCATCAGGTTGTCCACCTCGACGCTGCTGCGCGGGTCGGc                                                                   >  6:6005/1‑148 (MQ=255)                                                                          ccGCAGCCAACAGCTCGTAGAGGAACTCCAGTTCGTGGGCCAGGTCGCCGATCGGGGTGATTTCGACCATGCGCGCCACGCCTTTGAGGGTGTGCAGGTCGCGCATCAGGTTGTCCACCTCGACGCTGCTGCGCGGGTCGGCCTGCCa                                                             <  2:68236/148‑1 (MQ=255)                                                                          ccGCAGCCAACAGCTCGTAGAGGAACGCCAGTTCGTGGGCCAGGTCGCCGATCGGGGTGATTTCGACCATGCGCGCCACGCCTTTGAGGGTGTGCAGGTCGCGCATCAGGTTGTCCACCTCGACGCTGCTGCGCGGGTCGGCCTGCCa                                                             <  8:58128/148‑1 (MQ=255)                                                                                        tCGTAGAGGAACTCCAGTTCGTGGGCCAGGTCGCCGATCGGGGTGATTTCGACCATGCGCGCCACGCCTTTGAGGGTGTGCAGGTCGCGCATCAGCTTGTCCACCTCGACGCTGCTGCGCGGGTCGGCCTGCCAGCGCGCCAGGgccg                                               >  5:6996/1‑148 (MQ=255)                                                                                              agGAACTCCAGTTCGTGGGCCAGGTCGCCGATCGGGGTGATTTCGACCATGCGCGCCACGCCTTTGAGGGTGTGCAGGTCGCGCATCAGGTTGTCCACCTCGACGCTGCTGCGCGGGTCGGCCTGCCAGCGCGCCAGGGCCGCCgcgg                                         >  8:85165/1‑148 (MQ=255)                                                                                               ggAACTCCAGTTCGTGGGCCAGGTCGCCGATCGGGGTGATTTCGACCATGCGCGCCACGCCTTTGAGGGTGTGCAGGTCGCGCATCAGGTTGTCCACCTCGACGCTGCTGCGCGGGTCGGCCTGCCAGCGCGCCAGGGCCGCCgcggc                                        >  5:98762/1‑148 (MQ=255)                                                                                                 aaCTCCAGTTCGTGGGCCAGGTCGCCGATCGGGGTGATTTCGACCATGCGCGCCACGCCTTTGAGGGTGTGCAGGTCGCGCATCAGGTTGTCCACCTCGACGCTGCTGCGCGGGTCGGCCTGCCAGCGCGCCAGGGCCGCCGCGgcgc                                      >  4:131801/1‑148 (MQ=255)                                                                                                    tCCAGTTCGTGGGCCAGGTCGCCGATCGGGGTGATTTCGACCATGCGCGCCACGCCTTTGAGGGTGTGCAGGTCGCGCATCAGGTTGTCCACCTCGACGCTGCTGCGCGGGTCGGCCTGCCAGCGCGCCAGGGCCGCCGCGGCGctct                                   >  2:29100/1‑148 (MQ=255)                                                                                                      cAGTTCGTGGGCCAGGTCGCCGATCGGGGTGATTTCGACCATGCGCGCCACGCCTTTGAGGGTGTGCAGGTCGCGCATCAGGTTGTCCACCTCGACGCTGCTGCGCGGGTCGGCCTGCCAGCGCGCCAGGGCCGCCGCGGCGCTCTcg                                 >  4:99576/1‑148 (MQ=255)                                                                                                       aGTTCGTGGGCCAGGTCGCCGATCGGGGTGATTTCGACCATGCGCGCCACGCCTTTGAGGGTGTGCAGGTCGCGCATCAGGTTGTCCACCTCGACGCTGCTGCGCGGGTCGGCCTGCCAGCGCGCCAGGGCCGCCGCGGCGCgctc                                  <  8:87875/146‑1 (MQ=255)                                                                                                       aGTTCGTGGGCCAGGGCGCCGATCGGGGGGATTTCGACCATGCGCGCCACGCCTTTGAGGGTGTGCAGGTCGCGCATCAGGTTGTCCACCTCGACGCTGCTGCGCGGGTCGGCCTGCCAGCGCGCCAGGGCCGCCGCGGCGCTCTcga                                <  5:133853/148‑1 (MQ=255)                                                                                                                 ccAGGTCGCCGATCGGGGTGATTTCGACCATGCGCGCCACGCCTTTGAGGGTGTGCAGGTCGCGCATCAGGTTGTCCACCTCGACGCTGCTGCGCGGGTCGGCCTGCCAGCGCGCCAGGgc                                                 >  3:128703/1‑121 (MQ=255)                                                                                                                  cAGGTCGCCGATCGGGGTGATTTCGACCATGCGCGCCACGCCTTTGAGGGTGTGCAGGTCGCGCATCAGGTTGTCCACCTCGACGCTGCTGCGCGGGTCGGCCTGCCAGCGCGCCAGGgcc                                                <  4:128703/121‑1 (MQ=255)                                                                                                                   aGGTCGCCGATCGGGGTGATTTCGACCATGCGCGCCACGCCTTTGAGGGTGTGCAGGTCGCGCATCAGGTTGTCCACCTCGACGCTGCTGCGCGGGTCGGCCTGCCAGCGCGCCAGGGCCGCCGCGGCGCTCTCGACGATGTCCGAGc                    <  1:145978/148‑1 (MQ=255)                                                                                                                            aTCGGGGTGATTTCGACCATGCGCGCCACGCCTTTGAGGGTGTGCAGGTCGCGCATCAGGTTGTCCACCTCGACGCTGCTGCGCGGGTCGGCCTGCCAGCGCGCCAGGGCCGCCGCGGCGCTCTCGACGATGTCCGAGCTTTCTTCCa           <  1:2590/148‑1 (MQ=255)                                                                                                                                   tGATTTCGACCATGCGCGCCACGCCTTTGAGGGTGTGCAGGTCGCGCATCAGGTTGTCCACCTCGACGCTGCTGCGCGGGTCGGCCTGCCAGCGCGCCAGGGCCGCCGCGGCGCTCTCGACGATGTCCGAGCTTTCTTCCAGGAacac    >  2:135392/1‑148 (MQ=255)                                                                                                                                      tttCGACCATGCGCGCCACGCCTTTGAGGGTGTGCAGGTCGCGCATCAGGTTGTCCACCTCGACGCTGCTGCGCGGGTCGGCCTGCCAGCGCGCCAGGGCCGCCGCGGCGCTCTCGACGATGTCCGAGCTTTCTTCCAGGAACACtt  >  2:76433/1‑147 (MQ=255)                                                                                                                                              |                                                                                                                                           TCAAGCATATGCGCCAGCCGGTCGTGGCAGTTCTGCAGCAGTGCGAACAGTGGCGCACTTGGCGGCAATCTACCCGCAGCCAACAGCTCGTAGAGGAACTCCAGTTCGTGGGCCAGGTCGCCGATCGGGGTGATTTCGACCATGCGCGCCACGCCTTTGAGGGTGTGCAGGTCGCGCATCAGGTTGTCCACCTCGACGCTGCTGCGCGGGTCGGCCTGCCAGCGCGCCAGGGCCGCCGCGGCGCTCTCGACGATGTCCGAGCTTTCTTCCAGGAACACTT  >  NC_002947/5683939‑5684218

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.